Sample 3300019754

Basic Information
IMG/M Taxon OID	3300019754 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0217622 \| Ga0193956
Sample Name	Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_7_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300019754 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0129088 | Gp0217622 | Ga0193956

Sample Name

Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_7_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	219737795
Sequencing Scaffolds	23
Novel Protein Genes	33
Associated Families	32

Dataset Contents

Total Genome Size

219737795

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
Not Available	16
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → Viruses

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Ecosystem Assignment (GOLD)

Name

Microbial Communities From Sediments And Microbial Mats In Various Locations

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → microbial mat material
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater river biome → river → microbial mat material

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1644	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: Delaware

Coordinates

Lat. (^o)

38.7906

Long. (^o)

-75.1644

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001166	Metagenome / Metatranscriptome	760	Y
F007309	Metagenome / Metatranscriptome	353	N
F008427	Metagenome / Metatranscriptome	333	Y
F009188	Metagenome / Metatranscriptome	322	Y
F010090	Metagenome / Metatranscriptome	308	N
F013295	Metagenome	272	N
F014744	Metagenome / Metatranscriptome	260	Y
F019641	Metagenome / Metatranscriptome	228	N
F021441	Metagenome / Metatranscriptome	219	Y
F027054	Metagenome / Metatranscriptome	196	N
F032856	Metagenome / Metatranscriptome	179	N
F034161	Metagenome / Metatranscriptome	175	N
F037200	Metagenome / Metatranscriptome	168	Y
F040603	Metagenome / Metatranscriptome	161	N
F046978	Metagenome	150	Y
F047109	Metagenome	150	N
F051181	Metagenome / Metatranscriptome	144	N
F056175	Metagenome / Metatranscriptome	138	N
F070144	Metagenome / Metatranscriptome	123	N
F072375	Metagenome / Metatranscriptome	121	N
F073262	Metagenome	120	Y
F076890	Metagenome / Metatranscriptome	117	N
F081362	Metagenome / Metatranscriptome	114	Y
F083435	Metagenome / Metatranscriptome	113	Y
F088815	Metagenome	109	N
F089529	Metagenome / Metatranscriptome	109	N
F090422	Metagenome / Metatranscriptome	108	N
F092048	Metagenome / Metatranscriptome	107	N
F092191	Metagenome	107	N
F099388	Metagenome / Metatranscriptome	103	N
F100980	Metagenome	102	Y
F100982	Metagenome / Metatranscriptome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193956_1003749	All Organisms → Viruses → Predicted Viral	4879	Open in IMG/M
Ga0193956_1016686	All Organisms → Viruses → Predicted Viral	1703	Open in IMG/M
Ga0193956_1021436	All Organisms → Viruses → Predicted Viral	1439	Open in IMG/M
Ga0193956_1025036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1299	Open in IMG/M
Ga0193956_1031839	Not Available	1108	Open in IMG/M
Ga0193956_1041224	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
Ga0193956_1059591	Not Available	751	Open in IMG/M
Ga0193956_1060177	All Organisms → Viruses	746	Open in IMG/M
Ga0193956_1060550	Not Available	743	Open in IMG/M
Ga0193956_1068349	Not Available	693	Open in IMG/M
Ga0193956_1072958	Not Available	667	Open in IMG/M
Ga0193956_1075059	Not Available	657	Open in IMG/M
Ga0193956_1089003	Not Available	597	Open in IMG/M
Ga0193956_1090952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	589	Open in IMG/M
Ga0193956_1093648	Not Available	580	Open in IMG/M
Ga0193956_1095153	Not Available	575	Open in IMG/M
Ga0193956_1098230	Not Available	565	Open in IMG/M
Ga0193956_1098673	Not Available	564	Open in IMG/M
Ga0193956_1101319	Not Available	556	Open in IMG/M
Ga0193956_1102049	Not Available	554	Open in IMG/M
Ga0193956_1105629	Not Available	544	Open in IMG/M
Ga0193956_1117093	Not Available	514	Open in IMG/M
Ga0193956_1121221	Not Available	505	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193956_1003749	Ga0193956_10037494	F040603	MMYYTKHKALADTSETSLFTVPTGYVLWVNYIFIANHGNSTNNVSCWWEDGAGVDQLYFLDNNSLQSGAKEILGGQADAPIFVLHNGDVVKAQTGSAGDVEIAFTFKLMNEPAAFPNFNG
Ga0193956_1016686	Ga0193956_10166867	F092048	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI
Ga0193956_1016686	Ga0193956_10166868	F051181	MDDLLEQAQENISENVDKQEKEKLYLVLQESLNELSGLEELNKTYKELRDKAIKDLYNVGISAQSLATTTELT
Ga0193956_1021436	Ga0193956_10214361	F100982	QIVDSIACSNIDTDTFKCLNENQRSYLRNEIVRTLDTMLNLD
Ga0193956_1021436	Ga0193956_10214364	F027054	MTKQKKETSRHWTVELNIGSKRNMGKLRHSKSSGYRYAYHDLNHVRKKVENRFDGGSGNIIKAMFEFDGTYNDEIEKSFYIAFSFYGYIETFKDDDGVEVEYMTLADRKILEDKLTILCMELEQECIGYNIKEWTSSTFYPTGKQDLIYHPNYEGEQMIFEDEYFMTFGYHKLSSFEKLHTV
Ga0193956_1022706	Ga0193956_10227061	F046978	MTEETKQKAVNLSVLVLGTENISGYISYLINKAHKEAEK
Ga0193956_1025036	Ga0193956_10250364	F090422	VGDHKRGNVEMSRLGEVERVKRTLKLFDMILNKHIDSINPEDNSLPIDGLHWLISMQADCEDLIEYLSDYDSYDPG
Ga0193956_1031289	Ga0193956_10312891	F083435	LDDLTTEEYEQYLKNKDNRDSIQRAKRRDSKIRWQYRRERFKKRFIQLLAKFGVKITDTNIDDTGDDFYEEFKKFTKK
Ga0193956_1031839	Ga0193956_10318391	F010090	TLMALYTIPVGYTGYLLSMNISSGKDQEMNFKFIQRDNSVANAAFQTKQFLDVRGGQTTVIFNAINVIPEKSDIYVSGKASSTSSASASFDLLLVQDGY
Ga0193956_1041224	Ga0193956_10412241	F034161	VSGASTMPFKSMQELARAQSDPRYKSGDKAYHEEIDRRLSVSSI
Ga0193956_1041224	Ga0193956_10412242	F001166	MIKNMATELGENVQVKANLAFMAKVIAIVGTCVWGYSVVWNKLMVLDSSLDRVQHEGTLLGDLSARMMHLEKFAEQSKADLNHLLEMQDAPITSDHQQFERIRYLEKELDILRGKFDYFIYGAR
Ga0193956_1041224	Ga0193956_10412243	F019641	LIILYTEQGEKMGELLMLFITGGGSTAMGAILKGVFGYIFEAKQNKHDLEMAREARASDNFLRLQAEIAKGGTGEFVSFTRRILAVIGVSTLCACIILCTLFPSAEIVTLTNADGEGVNEFFFGLI
Ga0193956_1059591	Ga0193956_10595912	F089529	MRRSKKRLHLNSINNNPTTGMDTGGVSSAISKDGEHIYVSKGEKIPYEDGFRICVGQEKAPQCKDLISTFSHISQDRWDAIFGQKDK
Ga0193956_1060177	Ga0193956_10601771	F056175	MHNAGNRKVKMKLKIYEAGEQLNRIANTLEEILRLVKLDQEKMAKRFPEPETDELSKEWKHEN
Ga0193956_1060550	Ga0193956_10605501	F014744	MLPHLYSRPEYTNKKNKRSNMYNNLNQKLSELQSGNYLMKVKSISDRRPNEYYSKEYFVTVKYQVTDLNNPKRKFGVIVSGMGSKPIELNVDRELLPTNYFVWDNFDEVLFERLSRWQKSINEEGYYPKDRDTGRVVA
Ga0193956_1060550	Ga0193956_10605503	F047109	MKTYKVIGGYTVYEQYEINVEAKDDKEAIAKAEKIPVEKWNELQNSNDGGFIIDDVWEE
Ga0193956_1063125	Ga0193956_10631251	F076890	SLEQGPAQSVADAGRIFRSRTARDLLMVVNRTVTTLLMAALGPGLSACSTPGFEEYCRYSDEYSIREADPQSLALVLGVRRGLAMETPFVVVRSLSEHNRGAALKLHATAEPHPMPVSLDESRCAAVDWNTYTLTVDEEEWSAFWSDDRNAPFEIAIAFLDNNESLLVSKFGAAIVDTAASDYLVSCGCYWK
Ga0193956_1068349	Ga0193956_10683491	F008427	SIGTASLAGVTLTTAGTFYNLGTIKIKSGRPYALIIPQGFIASAVSNSDFEVQLRQNATPSTAFSYTSYSDDVEYDLDGTKTITGGTIINRTYLSGKGVSIENFGDGFNFEYQLGQTIAGASDTLTLCAKGASNNDGVIGSLKWYDTTNG
Ga0193956_1072958	Ga0193956_10729581	F070144	MEKIEDTEMNGDNWSVTRHPIHKNMYVAKHINIWGSESHTVDSLIEAMDIIKKFKNQEDWILQKREEFGDYMWRNDDFRKDITKG
Ga0193956_1072958	Ga0193956_10729582	F032856	MDEAKYRYWAKEYYDHLIEDVSDEMVFEYEENVAGKVVNEFVVEEDYVMQLIEYWIDNYTMGNHKCKEIIDNLSYDIFEDDDEFGVRPDSWKQAGVWALDHAIHTNDNIEAIYKMTNEKLQELWKK
Ga0193956_1075059	Ga0193956_10750591	F073262	VGLATQLLALQSTTNTTGTNLNASLNRPKALAALQDKCPVLVASLLAVCEVATTAALPMCWSKVHATLKPAKWAARHARALDTAGSKIDKPVPLIPPPVASDLGNGRFTASSANNPNEGMSVFRIRPSCMPSHQEHQDRNRMFEVLVQGVGAASFEAQQMALISNEFELPQSAEEFRGCINGYQVSLRTSLGVHSRLCVACEVLAK
Ga0193956_1089003	Ga0193956_10890033	F088815	YHKTTGDDTMKHRLTRVEVLDLFMLLLEFRETEPGLSKDDVRSLVAALDVLNTAQRERMLAEEDRIG
Ga0193956_1090123	Ga0193956_10901231	F099388	VDNILNANTQLVNNLPLSETVKNQFDNVVRNRAKNLATPGGVIDAVDVWEMGVLGLMIAAIAYKEYDEIPTIFKRTATNMFNSMTSMYNIPPVPLEQYDLDYEFIEKVITTGEKVMPTDIIIKKVGEIAKGVGEKGLATGFGYVPTTPKNTDTMETTQKIQPGVQEEKMFEQARPKKNRNGGSGGGSGARIE
Ga0193956_1090952	Ga0193956_10909521	F100980	VLFRLCLAFFLLIPSPVFAEEVPGEVTVNEGFEDSTYETGLTVSTGVIYCDEQDRYGTTGCSLGIGSSTLFVFSEDVYEVGFIVGAVNNSYTVKYYYSDNTDETIQKSGQDNSEGPPWANMYDSFYKSFTDYNNDEANTDKFITKFEVNVSDPTV
Ga0193956_1093648	Ga0193956_10936482	F013295	MKINNLTPKQFARREIIKYLRDLFDNPQKYIQGFDDLTHRQQEEILRHVSLDEHRIDKLLNLPMGES
Ga0193956_1095153	Ga0193956_10951531	F081362	GVTNGQVLAYNSTSGDFEPADPTTGDITAVNTNANSGLAGGAVSGDVDLTVDPSNLTDGTSITVDTSNDFLILEDVTDGTVYKVNPDQIASGSANALIDGTSDLTITDGTGLDYDISGTDVASWEVGGIALTADGGIFRHNQTQAATYTVASTEGAVLAGPITISGVVTNAGTMVIL
Ga0193956_1098230	Ga0193956_10982301	F037200	MATTIVTKNGSGAPTASDLVAGELAVDLTNGRLYTENSGGT
Ga0193956_1098673	Ga0193956_10986731	F007309	MTDKEKKLAAHLAAMCCQADEDCSAEYRTEHFRSTMDDAYDYLKEIGYLK
Ga0193956_1101319	Ga0193956_11013191	F009188	RGFGNRSAAQGGNNREEINYNNKHYVAVCWLGGRNATDKPSDKAIASVKWLYEQVGGELRPHSSYKQTQCPGDAWRQWIVEETTPELSNKSPDNVYVPDSFETKLDKILDILEDIQRKLKLGKLIQ
Ga0193956_1102049	Ga0193956_11020491	F092191	LSDRKIPDDVLKFLDDEYYSISKKQNIKFGDMDLLHYIRVNIKDHKNLWKSYNEVDDKLHKIQKIMEE
Ga0193956_1105629	Ga0193956_11056291	F072375	ENIEKRIPKIIQRCKIRQNLVSLSNDPKVVKDYIQPQFDHYFWKSEDGNYLKDAMNFWES
Ga0193956_1117093	Ga0193956_11170931	F021441	MKKIKHNDLVPWFIQDHGTLPASYLKSCRSFFDSIKLQASSIKPQASNQKNLHKPGTR
Ga0193956_1121221	Ga0193956_11212211	F073262	PTGHLIGAAWRHANNCLEGLRAPVGVATQLLALQSATNTTGTNLNASLNRPKALATLQDKCPMLVATLLAACEVATAAALPLHWSKVHATLKPAEWAACHAHALDTAGSEIDKLAPLIPPPVASDLGNGRFTASSTHNPNEGMSMFRIWPSCMPSRQEHQDRNRTFE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300019754: Microbial mat bacterial communities from the Broadkill River, Lewes, Delaware, United States - BB_7_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences