NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019735

3300019735: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLC_1-2_MG



Overview

Basic Information
IMG/M Taxon OID3300019735 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0129088 | Gp0217656 | Ga0193990
Sample NameSediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLC_1-2_MG
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size127879788
Sequencing Scaffolds40
Novel Protein Genes45
Associated Families43

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → Viruses → Predicted Viral3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
Not Available21
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Sediments And Microbial Mats In Various Locations
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biomeriversediment
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000200Metagenome / Metatranscriptome1633Y
F001153Metagenome / Metatranscriptome764Y
F001488Metagenome / Metatranscriptome686Y
F004928Metagenome / Metatranscriptome418Y
F005591Metagenome / Metatranscriptome395Y
F005815Metagenome / Metatranscriptome389Y
F005940Metagenome / Metatranscriptome386N
F008816Metagenome / Metatranscriptome327N
F010163Metagenome / Metatranscriptome307Y
F012457Metagenome280Y
F013090Metagenome / Metatranscriptome274Y
F021019Metagenome / Metatranscriptome221Y
F023488Metagenome / Metatranscriptome210Y
F027900Metagenome / Metatranscriptome193Y
F028042Metagenome / Metatranscriptome193Y
F030400Metagenome185Y
F031501Metagenome / Metatranscriptome182N
F032280Metagenome180Y
F034932Metagenome / Metatranscriptome173Y
F038195Metagenome166Y
F040945Metagenome / Metatranscriptome161N
F047386Metagenome / Metatranscriptome150N
F049008Metagenome / Metatranscriptome147Y
F053305Metagenome / Metatranscriptome141Y
F053659Metagenome / Metatranscriptome141Y
F058634Metagenome / Metatranscriptome134Y
F061862Metagenome131Y
F062681Metagenome130N
F062772Metagenome130Y
F070125Metagenome / Metatranscriptome123N
F070127Metagenome / Metatranscriptome123Y
F073262Metagenome120Y
F074892Metagenome / Metatranscriptome119Y
F075452Metagenome119Y
F076890Metagenome / Metatranscriptome117N
F083435Metagenome / Metatranscriptome113Y
F084254Metagenome / Metatranscriptome112Y
F085805Metagenome111N
F088815Metagenome109N
F089558Metagenome / Metatranscriptome109N
F090242Metagenome / Metatranscriptome108Y
F090406Metagenome108N
F102115Metagenome / Metatranscriptome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0193990_1000876All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2628Open in IMG/M
Ga0193990_1001143All Organisms → Viruses → Predicted Viral2396Open in IMG/M
Ga0193990_1004531All Organisms → Viruses → Predicted Viral1400Open in IMG/M
Ga0193990_1005738All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1270Open in IMG/M
Ga0193990_1005787All Organisms → Viruses → Predicted Viral1266Open in IMG/M
Ga0193990_1008382All Organisms → cellular organisms → Bacteria → Proteobacteria1093Open in IMG/M
Ga0193990_1008637Not Available1081Open in IMG/M
Ga0193990_1012871Not Available927Open in IMG/M
Ga0193990_1016950Not Available835Open in IMG/M
Ga0193990_1021764Not Available762Open in IMG/M
Ga0193990_1022298Not Available755Open in IMG/M
Ga0193990_1024868All Organisms → cellular organisms → Bacteria725Open in IMG/M
Ga0193990_1026147All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.712Open in IMG/M
Ga0193990_1030151All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta677Open in IMG/M
Ga0193990_1030389Not Available675Open in IMG/M
Ga0193990_1030519All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales674Open in IMG/M
Ga0193990_1031854Not Available664Open in IMG/M
Ga0193990_1033027All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi655Open in IMG/M
Ga0193990_1035240All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl641Open in IMG/M
Ga0193990_1036611Not Available632Open in IMG/M
Ga0193990_1037314Not Available628Open in IMG/M
Ga0193990_1038094Not Available623Open in IMG/M
Ga0193990_1041220All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Colwelliaceae → Thalassotalea → unclassified Thalassotalea → Thalassotalea sp. ND16A607Open in IMG/M
Ga0193990_1046102Not Available583Open in IMG/M
Ga0193990_1046198Not Available583Open in IMG/M
Ga0193990_1049378Not Available570Open in IMG/M
Ga0193990_1049977Not Available568Open in IMG/M
Ga0193990_1051253Not Available564Open in IMG/M
Ga0193990_1052183All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini560Open in IMG/M
Ga0193990_1052794Not Available558Open in IMG/M
Ga0193990_1052890All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis557Open in IMG/M
Ga0193990_1053635Not Available555Open in IMG/M
Ga0193990_1055704All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage548Open in IMG/M
Ga0193990_1057285Not Available543Open in IMG/M
Ga0193990_1061101All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria532Open in IMG/M
Ga0193990_1061225Not Available531Open in IMG/M
Ga0193990_1061406All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium531Open in IMG/M
Ga0193990_1066789All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium516Open in IMG/M
Ga0193990_1068500Not Available512Open in IMG/M
Ga0193990_1069995Not Available508Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0193990_1000876Ga0193990_10008766F070125VTTAEQRRQWIEALHAYRDDSERLFGLVASLANLLDRSLVVETMESVLGITAVHDGDCVIFDDLAIRFGSDD
Ga0193990_1001143Ga0193990_10011431F001153MVEDDSLIIIHYSRDVLMPAGKDKLPYSNIIAKKVREGIRSGVSVKDILSSIQKYQNAPSSTATFYKLYGEDIAEEKASIVGAVGSVVVQQALDGDFKSQELFLRSKGGWSPTSTVNEVDQVEDPDVDESAIDSLMTLLGKTRTDDNSAST
Ga0193990_1003538Ga0193990_10035381F076890MLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLHTTPAAHPMPMGLDESRCARMDWKTYTLAVDPDEWNAFWQDDRNSPFEIGIAFLEDFHPLPLSAFGAAILDTGSADPLVSCGCFWR
Ga0193990_1004531Ga0193990_10045312F047386MIRQENMPFQIDRPVFVKYPFQSLGRQLEKGEEFKWKEIGVSEDKALILYTQGFIHHNSEFEVELKVGDGLEQLDVAGLHGLVDSINAKVKSKTPSEAEFQKKKCKKSKIVDKQRGLIRSWRRNYGHMETD
Ga0193990_1005738Ga0193990_10057382F074892MTAKYASIVLLGLLLSGCAEKGENVYKSWVGPDRPNMAIVTLRLGDDVRDITVRERVLPRSEYGTLLLVPGQYTLYEDDGANIGITIRPVMMNTEKARASGELILGHTYILHAGKSKDGGERALWIEDARSGEVFIDTR
Ga0193990_1005787Ga0193990_10057875F030400TMVVTNMKELCEYNRQKKLARKAQHVEIIKIYGECKGMGDKRYTIPQKSSFPKQYKAAFNKIWR
Ga0193990_1008382Ga0193990_10083824F028042PLETPIEDPEKTKHTTSWGHTYYDTRIREKNVDNS
Ga0193990_1008637Ga0193990_10086372F012457MMIKDLEKSKDLDRDALSAVRGGRDSIEQGGVYAPVANINNGFSFASPTTIVSTPVNAPSAVFNDNDLHLKLANKTANVLGSLGTVVLQ
Ga0193990_1012871Ga0193990_10128713F031501MTSELLDLFEEAKRIIDKQEELIKMQQSLIKTMQQGLQGVELNELLLKKQLADLQEELQAITNDYIDTKNNYIGGGEKV
Ga0193990_1016950Ga0193990_10169501F027900TAAERQRQAMSEQAGAFGETYVSGLQALLQSGLGQADLAGSLGSSIAKTGVEGLLGGLFS
Ga0193990_1021764Ga0193990_10217641F085805MKSKSISADADKIVSGLLVCKPLADEVYNKSRKLALADEENFRNNRIAERHRLNNGYSKGGH
Ga0193990_1022046Ga0193990_10220462F000200MFKIYDFRCTNGHVFEKMVESGVTTSRCGCGANATKMVSAPSFVLEGHSGDFPGRHMKWVREHEKAGKKSSP
Ga0193990_1022298Ga0193990_10222983F038195MKLHKDFYEYKTIPFTYFKKVANRHDFKKQWVTVKCQEDIMKQKPINVEIRRLRKNV
Ga0193990_1024868Ga0193990_10248681F005591MNLYFKSTTLDKQIGWTWKDMDKAYWDTWIPKKSDIEIITRLNKEQKKQALDELWEDLQSAIQFTRDRNNARRKAKRLAQKEKV
Ga0193990_1026147Ga0193990_10261472F062681MTEFRDAVEKQRGLQAYEEWAQQIRYIHSDGWEGTRTIVYNDGRRELYNLKTDQLIFEEPRKTRRRDLIDSNAFTKFLHRIGFYHE
Ga0193990_1030151Ga0193990_10301512F001488MARLELTLNFPKSFQIKTFNVKSEKTLSPLAKLILQSVRFKHFYYVRDDISYLLKSNPIERDFLLQALYSTVISLQNNLSINFFDMWVYDIYINKVETHNKFMSQKSQNLESDEYITIKLAYGS
Ga0193990_1030389Ga0193990_10303892F034932MRKVRIESHSHHLIVGFVAGVEWVNDSAVTIVDLDDRGRTPFVVLEDRDGSGKEEVLRLTDNGIEGKE
Ga0193990_1030519Ga0193990_10305191F010163HINKNYFKNFKKFMLLLKITKKLFFSHNVIISNSIKHLFYSVEVLEFVQKEAFSYYLRXLLLFVFTNLHNLTVKTNYFISYLFFAFFNNQKLISYVITINLSPTNTLINVKTIKGNPRFFYSAGMCNLQKKQKIRQPKAIITILRALLLKTKLFKTKPVAVHFNNLFFNHQTYILKKLKQKIFTKLVTSYTCFSHNGCRLKKKKRIKIRTRKFSKEXLSGLKWQ
Ga0193990_1031854Ga0193990_10318541F088815VEVLDLFMLLLEFRETEPDLSKDDVRSLVAALDVLNTAQRERMLAEEDRIG
Ga0193990_1033027Ga0193990_10330271F053659VNIDQAKPKRQKRTITLYLGNTLGEYEATYLTETGLKALIRRVETADSINWGCLATGHEAGCPRQLHFTHHDSYSRWVKHFNGTQSVVVIHRVRCLDCGAVFSVQPSFLIRYKRYDTDATEKLMTLLFITEDSYRMAGVSQTLALDDQQAGTWAALEIHQAHAIQPLALWRLVQ
Ga0193990_1035240Ga0193990_10352401F102115LLPTYKGTDLEGRAQIKTPEFADKFTGTPAEIESQLQNVRDTRQYLYSAGLTNLQGEIDKETQKLKNGGAKELQKGKAQGDIYQSLVGSFSF
Ga0193990_1036611Ga0193990_10366112F075452MNYKSHNNLLRYFIEPHNQLPASYLKSCNKFFKELSSKRQASSGKPQALIQKNLHKPGTRVKNRFNRKV
Ga0193990_1037145Ga0193990_10371452F021019MRKYLVQIFTKYLQTSFEIESNKDINTVEELHPHIIDFLGKSDIKWEENDLQYTSTVNDFYITYEEVNNGSTKDGVVREENTVRV
Ga0193990_1037314Ga0193990_10373141F032280MPDQITLKAINLLREADPNLDEMNSLDKFIAHQNEVIKMYKQFKGHPQAEKLKPRLKVFEESALAFTWVHTQMMAYKREKLLANANEMEMANAVIELKNELDILTKLNKSD
Ga0193990_1038094Ga0193990_10380941F073262GLRAPVGIATQPLALQSATNTTGTNLNASLSRPKALAALQDKCPMLVASLLAACKVATAADLPLHWSKVHATLKPAEWAAHHARALDTAGSEIDKPAPLIPPPMASDLGNGRFAASSTHNPNEGMSTFRIRPSCMPSRQEHQDRNRMFEALVQGVGAASFEAQQMALINNEFELPQSTEEFRGYINGYQVLLHAFLGVHSRLCVACK
Ga0193990_1041220Ga0193990_10412202F005815MTMNTTRLTTYWTIDEAATAIDFLDILREALWETYGEQITQMHREACDDCIRDANQCEFEFDDEIPF
Ga0193990_1046102Ga0193990_10461021F040945LDALCVKYSSRSSGLIIYDDRLKDNIIGEFTVDEFRKIYQTRKPLVRRLYTEVHDIDQVSYRSLTHNTRIGDKYIPIVARIIPGIELPLIMGRDFRDDHAETPAQQKQVNELNPPRIYFFKRDKTSKPRLTLKQLERIHKKGNHPALMEMTQDITR
Ga0193990_1046198Ga0193990_10461981F073262LETADDPTGHLIGAARRHANNHLEGLRAPVGVATQLLALQSATNTTGANLNASLNRPKAIATLQDKCPMLVASLLAVCKVATTADLPVHWSMVHATLKPAEWAACHANALDSAGSKANKPAPLIPPPLAQDIKNGHFTASSTNNLTEGMSVFHIRPSCMPCRQEHLNRNRKFEVLVQGVGAASFKVQQMALIND
Ga0193990_1049378Ga0193990_10493781F053305MLKKSLSMVLMALFVFSFIAVAAVSAQETQKITGTVMSVNVETGEVIVKDDAGEMKSLMADPKAGVDLKMLKEGDPVNVESDSNGVIKSLKAAE
Ga0193990_1049977Ga0193990_10499771F073262ASTNQAGPITSVTSGALEVADNPTGHLIGAARHHANNHLEGLRAPVVIATQPLALHGTTNMTGTDLNASLDGPKTIATPQDKCLMLVASLLAVCEVATTADLPVHWSTVHATLKSTEWAAHHANALDSAGSEMNKPAPVTSPPLVQDMGNGCFTASSAINPTEGMFTFRIRPSCMPRHQEHLNRNRMFE
Ga0193990_1051253Ga0193990_10512532F023488GATRRSVFTAKLGNTNKLRMSEGFKLATDRQYAPFIHGKPIFRGFSPIRRTRPFFPPYKEGSSLAKWARRGQPKLNPFLVARAISRRGLKMKPFIGGVVYEKQKEIKDRGQEMLELIARDIARSVK
Ga0193990_1052022Ga0193990_10520221F070127MKELNFSINIKLSLTLREDKARINIKNVDLIPAVVSLPYLLNSRDRTATSKTDKKTVHDIILQTAKKYVVDTGQNKFTGAKLFNLSLLDHPGLKRNTFAAQVIAAAPTHPSHRHYPNQKDYFIYLGK
Ga0193990_1052183Ga0193990_10521831F062772MSLNGIWSCELGGAYGWEPIGTLFLQDGHITGGGRNHFSIGTYKTKGDGAVLHLEINQFGKRRALFGQKSEKVSVVVKAQRDGDKMIGEATLPGHTEYGMCVRFKRRADLPEEKTH
Ga0193990_1052794Ga0193990_10527942F084254EILAEVIRQSKRHPRADQVASALAMRGLPIAENDVMIVFDQYDIEKKTADSH
Ga0193990_1052890Ga0193990_10528901F090406WLIVALAGLAACSTTLTSVDKEGGNVYALPPMVVDQMLKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIIDGYVFEVTRKGTAPATGEPTVKRIFAKLQNDAELTGTGVAFVEFTD
Ga0193990_1053586Ga0193990_10535861F083435KYRFDTIRSAYSRLPRFWYGWLGRGTLDDLTNEEYEQYLKNKDNRGSIQKAKRRNSKIRWEYRQERLKNRFIQLLAKLGIKITGVNKGDKGDDLYEEFKKFSKK
Ga0193990_1053635Ga0193990_10536351F061862GKLKMQDKETMWYENDAPVQEYLGRELSRKAAGAEKDPKTVRFSWLEIMKKSFHIK
Ga0193990_1055704Ga0193990_10557041F089558GQFAATRFILDNPEARAIFLKVAKEAEQEYLSDTIAAQYLVDNYKQFAHLNYNTVRRYFRDYRDGRIK
Ga0193990_1057285Ga0193990_10572852F090242MSRRSKKSRFRSTFEEDVSKLLKGFDYEPFTVPYTIQRSYRPDFVHSASGVLVE
Ga0193990_1061101Ga0193990_10611011F058634SGPNEQIDAVDVSFYCDGIDPVLGVPRPPQSSPEQFTINTATSQGPEPKNTIGLFEKQGLPAGDCHFSFSAVSNTGNTECTGEITLAVATNATTAGEVVLACIHTPRYGGVRPDGTFNQCAEYRQLLVTPTTQSIGNLVDVRTEVYDPDGDDVTVRVQAVGACGNVQSANGNTAASC
Ga0193990_1061225Ga0193990_10612253F008816MLFYTVLVLSYTLNGDYLQAKTIFPSARACGDALPAYYEPVYTIDRNAIGQCLKTEVISASIKPKRRPNGNG
Ga0193990_1061406Ga0193990_10614061F005940PELLSFAIRGFQLVNDLVVDMPINISDQIERPFRKALRINGQGELIYQALRNKEGKNVQLEIYRPDTLLRGIIENVSSPIEEISPRGSVTQYCIVRFRGSKVIATSSSGQGLGIQLLGVNNLGL
Ga0193990_1066789Ga0193990_10667891F004928IVVHITETLGEQQRGDLVAALEGNVGIATAEFCPLHYHLMLVRYDTELYSSQDVLERVTSHDVSARLIGPV
Ga0193990_1068500Ga0193990_10685002F049008MSKNLEITQLTRECDDLAARFWRLEASGRGRGYLEWLQKVKQVSEIIEQNRPKTFYFFGNELESANSNASRRSARKKVEKSS
Ga0193990_1069995Ga0193990_10699951F013090KSSSLNINKNEDHKNRGIEFLLNGGKRKQTQPFHIIFEKMVCFLNREVNVYFEFSLNVGKKKRVKPRRKNNVSS

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