NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090242

Metagenome / Metatranscriptome Family F090242

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090242
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 48 residues
Representative Sequence MSRRSKKSTFRSTFEEDVSKILKGFDYEPFTVPYTIERSYRPDFVHHA
Number of Associated Samples 84
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 99.07 %
% of genes from short scaffolds (< 2000 bps) 87.04 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (65.741 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(37.037 % of family members)
Environment Ontology (ENVO) Unclassified
(67.593 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(76.852 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 27.63%    β-sheet: 0.00%    Coil/Unstructured: 72.37%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF10544T5orf172 9.26
PF00476DNA_pol_A 8.33
PF12705PDDEXK_1 6.48
PF13155Toprim_2 2.78
PF02945Endonuclease_7 1.85
PF05367Phage_endo_I 0.93
PF11753DUF3310 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG0749DNA polymerase I, 3'-5' exonuclease and polymerase domainsReplication, recombination and repair [L] 8.33


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A65.74 %
All OrganismsrootAll Organisms34.26 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10055154All Organisms → Viruses → Predicted Viral1717Open in IMG/M
3300000117|DelMOWin2010_c10171706Not Available693Open in IMG/M
3300000947|BBAY92_10076114Not Available901Open in IMG/M
3300000947|BBAY92_10105270Not Available750Open in IMG/M
3300000973|BBAY93_10019066All Organisms → Viruses → Predicted Viral1826Open in IMG/M
3300000973|BBAY93_10079403Not Available841Open in IMG/M
3300001344|JGI20152J14361_10099061Not Available586Open in IMG/M
3300002488|JGI25128J35275_1118956Not Available527Open in IMG/M
3300005057|Ga0068511_1013990All Organisms → Viruses → Predicted Viral1101Open in IMG/M
3300005837|Ga0078893_11456181Not Available618Open in IMG/M
3300005941|Ga0070743_10137122Not Available815Open in IMG/M
3300005941|Ga0070743_10206546Not Available644Open in IMG/M
3300006026|Ga0075478_10141448Not Available753Open in IMG/M
3300006752|Ga0098048_1017750Not Available2413Open in IMG/M
3300006789|Ga0098054_1061260All Organisms → Viruses → environmental samples → uncultured marine virus1430Open in IMG/M
3300006802|Ga0070749_10078676All Organisms → Viruses → Predicted Viral1971Open in IMG/M
3300006802|Ga0070749_10690143All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales546Open in IMG/M
3300006810|Ga0070754_10031389All Organisms → Viruses → Predicted Viral2961Open in IMG/M
3300006810|Ga0070754_10061459All Organisms → Viruses → Predicted Viral1945Open in IMG/M
3300006810|Ga0070754_10242063Not Available826Open in IMG/M
3300006868|Ga0075481_10287748Not Available574Open in IMG/M
3300006868|Ga0075481_10328107Not Available531Open in IMG/M
3300006916|Ga0070750_10131772All Organisms → Viruses → Predicted Viral1141Open in IMG/M
3300006916|Ga0070750_10293496Not Available696Open in IMG/M
3300006919|Ga0070746_10269487Not Available790Open in IMG/M
3300006919|Ga0070746_10313765Not Available717Open in IMG/M
3300017697|Ga0180120_10395126Not Available543Open in IMG/M
3300017710|Ga0181403_1000487Not Available9573Open in IMG/M
3300017710|Ga0181403_1039273Not Available994Open in IMG/M
3300017717|Ga0181404_1150468Not Available561Open in IMG/M
3300017719|Ga0181390_1059390Not Available1101Open in IMG/M
3300017719|Ga0181390_1182517Not Available512Open in IMG/M
3300017762|Ga0181422_1013782All Organisms → Viruses → Predicted Viral2687Open in IMG/M
3300017763|Ga0181410_1141310Not Available680Open in IMG/M
3300017764|Ga0181385_1106277Not Available859Open in IMG/M
3300017765|Ga0181413_1043385All Organisms → Viruses → Predicted Viral1400Open in IMG/M
3300017765|Ga0181413_1077307All Organisms → Viruses → Predicted Viral1019Open in IMG/M
3300017770|Ga0187217_1011406All Organisms → Viruses → Predicted Viral3254Open in IMG/M
3300017771|Ga0181425_1199626Not Available628Open in IMG/M
3300017772|Ga0181430_1055407All Organisms → Viruses → Predicted Viral1224Open in IMG/M
3300017782|Ga0181380_1171890Not Available733Open in IMG/M
3300017782|Ga0181380_1193677Not Available683Open in IMG/M
3300017968|Ga0181587_10094906All Organisms → Viruses → Predicted Viral2150Open in IMG/M
3300019699|Ga0193985_1034185Not Available586Open in IMG/M
3300019711|Ga0193993_1043367Not Available568Open in IMG/M
3300019715|Ga0193966_1021506Not Available709Open in IMG/M
3300019719|Ga0193977_1003086All Organisms → Viruses → Predicted Viral1470Open in IMG/M
3300019721|Ga0194011_1013244Not Available810Open in IMG/M
3300019735|Ga0193990_1057285Not Available543Open in IMG/M
3300019741|Ga0194020_1036546Not Available642Open in IMG/M
3300019746|Ga0194008_1036526Not Available695Open in IMG/M
3300019747|Ga0193978_1017149Not Available867Open in IMG/M
3300019749|Ga0193983_1058828Not Available585Open in IMG/M
3300019756|Ga0194023_1134916Not Available505Open in IMG/M
3300019765|Ga0194024_1126789Not Available592Open in IMG/M
3300020055|Ga0181575_10686504Not Available523Open in IMG/M
3300021317|Ga0210309_1149020All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon599Open in IMG/M
3300021325|Ga0210301_1071452All Organisms → cellular organisms → Bacteria5472Open in IMG/M
3300021356|Ga0213858_10000100Not Available36610Open in IMG/M
3300021375|Ga0213869_10070548All Organisms → Viruses → Predicted Viral1760Open in IMG/M
3300021379|Ga0213864_10039246All Organisms → Viruses → Predicted Viral2237Open in IMG/M
3300021957|Ga0222717_10096307All Organisms → Viruses → Predicted Viral1853Open in IMG/M
3300021957|Ga0222717_10403698Not Available755Open in IMG/M
3300021958|Ga0222718_10561638Not Available541Open in IMG/M
3300021961|Ga0222714_10383625Not Available747Open in IMG/M
3300022057|Ga0212025_1025440Not Available979Open in IMG/M
3300022061|Ga0212023_1044739Not Available616Open in IMG/M
3300022065|Ga0212024_1074953Not Available601Open in IMG/M
3300022065|Ga0212024_1081382Not Available576Open in IMG/M
3300022068|Ga0212021_1125097All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon526Open in IMG/M
3300022072|Ga0196889_1073770Not Available641Open in IMG/M
3300022159|Ga0196893_1004969All Organisms → Viruses → Predicted Viral1113Open in IMG/M
3300022168|Ga0212027_1015343All Organisms → Viruses → Predicted Viral1051Open in IMG/M
3300022183|Ga0196891_1027628All Organisms → Viruses → Predicted Viral1071Open in IMG/M
3300022187|Ga0196899_1037182All Organisms → Viruses → Predicted Viral1668Open in IMG/M
3300024346|Ga0244775_10672028Not Available836Open in IMG/M
3300025070|Ga0208667_1000897Not Available11826Open in IMG/M
3300025102|Ga0208666_1070545Not Available922Open in IMG/M
3300025103|Ga0208013_1085334Not Available811Open in IMG/M
3300025543|Ga0208303_1074525Not Available765Open in IMG/M
3300025570|Ga0208660_1099625Not Available640Open in IMG/M
3300025570|Ga0208660_1116098Not Available573Open in IMG/M
3300025610|Ga0208149_1009503All Organisms → Viruses → Predicted Viral3003Open in IMG/M
3300025610|Ga0208149_1065666Not Available913Open in IMG/M
3300025645|Ga0208643_1035099All Organisms → Viruses → Predicted Viral1628Open in IMG/M
3300025653|Ga0208428_1134401Not Available673Open in IMG/M
3300025668|Ga0209251_1042329All Organisms → Viruses → Predicted Viral1644Open in IMG/M
3300025694|Ga0209406_1160805Not Available703Open in IMG/M
3300025712|Ga0209305_1223353Not Available544Open in IMG/M
3300025803|Ga0208425_1012647All Organisms → Viruses → Predicted Viral2316Open in IMG/M
3300025828|Ga0208547_1019544All Organisms → Viruses → Predicted Viral2769Open in IMG/M
3300025840|Ga0208917_1115665Not Available964Open in IMG/M
3300025853|Ga0208645_1062653All Organisms → Viruses → Predicted Viral1705Open in IMG/M
3300025853|Ga0208645_1199180Not Available711Open in IMG/M
3300025853|Ga0208645_1241097Not Available609Open in IMG/M
3300025874|Ga0209533_1265088Not Available681Open in IMG/M
3300025889|Ga0208644_1293013Not Available650Open in IMG/M
3300025892|Ga0209630_10434180Not Available559Open in IMG/M
3300026187|Ga0209929_1023070All Organisms → Viruses → Predicted Viral1923Open in IMG/M
3300027159|Ga0208020_1011887All Organisms → Viruses → Predicted Viral1719Open in IMG/M
3300028125|Ga0256368_1029537Not Available978Open in IMG/M
3300028125|Ga0256368_1062483Not Available645Open in IMG/M
3300031851|Ga0315320_10019159All Organisms → cellular organisms → Bacteria5453Open in IMG/M
3300031851|Ga0315320_10630483Not Available699Open in IMG/M
3300034375|Ga0348336_116512Not Available865Open in IMG/M
3300034418|Ga0348337_053935All Organisms → Viruses → Predicted Viral1588Open in IMG/M
3300034418|Ga0348337_084167All Organisms → Viruses → Predicted Viral1097Open in IMG/M
3300034418|Ga0348337_164762Not Available604Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous37.04%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater13.89%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment9.26%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine5.56%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.70%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface3.70%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater2.78%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.78%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.78%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.78%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater1.85%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine1.85%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.85%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh1.85%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine1.85%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine1.85%
Marine WaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine Water0.93%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.93%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.93%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.93%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300000973Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY93Host-AssociatedOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300002488Marine viral communities from the Pacific Ocean - ETNP_2_60EnvironmentalOpen in IMG/M
3300005057Marine water microbial communities from the East Sea, Korea with extracellular vesicles - East-Sea-0.2umEnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300005941Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697EnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006789Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017710Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 26 SPOT_SRF_2011-09-28EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017764Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 8 SPOT_SRF_2010-02-11EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017771Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13EnvironmentalOpen in IMG/M
3300017772Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017968Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019699Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRC_1-2_MGEnvironmentalOpen in IMG/M
3300019711Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLC_4-5_MGEnvironmentalOpen in IMG/M
3300019715Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRT_2-3_MGEnvironmentalOpen in IMG/M
3300019719Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_4-5_MGEnvironmentalOpen in IMG/M
3300019721Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_7-8_MGEnvironmentalOpen in IMG/M
3300019735Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLC_1-2_MGEnvironmentalOpen in IMG/M
3300019741Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_6-7_MGEnvironmentalOpen in IMG/M
3300019746Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_4-5_MGEnvironmentalOpen in IMG/M
3300019747Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_5-6_MGEnvironmentalOpen in IMG/M
3300019749Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLT_4-5_MGEnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300020055Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101411CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300021317Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States ? R1088 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021325Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1033 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021375Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132EnvironmentalOpen in IMG/M
3300021379Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300022057Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v2)EnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022068Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)EnvironmentalOpen in IMG/M
3300022072Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v3)EnvironmentalOpen in IMG/M
3300022159Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v3)EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022183Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v3)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025102Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025103Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025668Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI073_LV_100m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025694Pelagic marine microbial communities from North Sea - COGITO_mtgs_120426 (SPAdes)EnvironmentalOpen in IMG/M
3300025712Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321 (SPAdes)EnvironmentalOpen in IMG/M
3300025803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025840Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300027159Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M
3300034418Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_1005515433300000117MarineMSRRSRRSRFRSTFEEDVSKLLKGFDYEPFTVPYTIQRSYRPDFVHSASGVLVECKGY
DelMOWin2010_1017170623300000117MarineMSRKSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHR
BBAY92_1007611423300000947Macroalgal SurfaceMNRRSKKSKFRSTFEDDVSKVLKGFDYEPFTVPYIIS
BBAY92_1010527023300000947Macroalgal SurfaceMSRRSKKSKFRSTFEEDVSKILKDFDYEPFTVPYIISRSY
BBAY93_1001906643300000973Macroalgal SurfaceMSRKSRRSRSSKFRSTFEEDVAKILKEFDYEPFTIPYTIARNYRPDF
BBAY93_1007940323300000973Macroalgal SurfaceMSRKSQKSRLGKFRSTFEDDVSKILTGFEYEPFTVPYTIERNYRPDFVHSASG
JGI20152J14361_1009906123300001344Pelagic MarineMNRRSKKSKFRSVFEEHTAEVLEGFDYEPYTVPYTIHRNYRPDFVHAPSDTLVECKGFFR
JGI25128J35275_111895623300002488MarineMSRRSKKSTFRSTFEEDVSKILKDFDYEPFTVPYVISRSYRPDFVHNASGTLVEC
Ga0068511_101399013300005057Marine WaterMSRRSRRSRFRSTFEEDVSKLLKGFDYEPFTVPYTIQRSYRPDFVHSASGVLVE
Ga0078893_1145618113300005837Marine Surface WaterMSRRSKKSKFRSTFEDDVSKILTGFEYEPFTVPYTIERNYRPDFVHSASG
Ga0070743_1013712213300005941EstuarineMSRKSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISRSYRPDFVDASGLYLIECKGYFR
Ga0070743_1020654613300005941EstuarineMSRRSKKSTFRSTFEEDVAKILKEFNYEPFTVPYTISRSYRPDFVDPSGLYLIECK
Ga0075478_1014144813300006026AqueousMSRRSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTI
Ga0098048_101775043300006752MarineMSRKSKKSRFRSTFEDDVSKVLKEFDYEPFTIPYTISRS
Ga0098054_106126043300006789MarineMSRKSKKSRFRSTFEDDVSKVLKEFDYEPFTIPYTISRSYRPDFVD
Ga0070749_1007867613300006802AqueousMSRRSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTIAR
Ga0070749_1069014313300006802AqueousMSRKSQRSKFRSLFEKDVAKLLKGFQYEPFTIPYTIHRNYRPDFVHSKSGTVVECKGFF
Ga0070754_1003138913300006810AqueousMSRRSQKSTFRSTFEEDVSKILKEFDYEPFTVPYTIERSYRPDFVHSA
Ga0070754_1006145913300006810AqueousMSRRSKKSKFRSTFEEDVSKILTGFDYEPFTVPYTIERSY
Ga0070754_1024206313300006810AqueousMSRRSKNSTFRSTFEEDVSKILKEFDYEPFTVPYTIERSYRPDFVHSA
Ga0075481_1028774823300006868AqueousMSRRSKKSAFRSTFEEDVSKILKGFDYEPFTVPYTIERSYRPDFVHHA
Ga0075481_1032810713300006868AqueousMSPRFPKSKFRSEFEKNVAKVLKGFEYEPFTIPYVIHRNYRPDF
Ga0070750_1013177213300006916AqueousMNRRSKRSKFRSTFEEDVSKILQEFNYEPFTIPYTISRSYRPDFVDASGLYLI
Ga0070750_1029349613300006916AqueousMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPDFVHIA
Ga0070746_1026948713300006919AqueousMSRRSKKSAFRSTFEEDVSKILKGFDYEPFTVPYIIERSY
Ga0070746_1031376513300006919AqueousMNRRSQKSKFRSVFEEHTAEVLEGFEYEPYTVPYTIHRNYTPD
Ga0180120_1039512623300017697Freshwater To Marine Saline GradientMSRRSKKSAFRSTFEEDVSKILKGFDYEPFTVPYTI
Ga0181403_1000487223300017710SeawaterMSRKSKKSRFRSTFEDDVSKVLKEFDYEPFTIPYTISRSYRPDFV
Ga0181403_103927323300017710SeawaterMSRKFKKSRFRSTFEDDVSKVLKEFDYEPFTIPYTISRSYRPDFV
Ga0181404_115046823300017717SeawaterMSRKSKKSKFRSTFEEDVSKILKEFNYEPFTIPYTISRSYRPDFVDVSGLYLIEC
Ga0181390_105939033300017719SeawaterMSRKSKKSRFRSTFEDDVSKVLKEFDYEPFTIPYTISRSYRPDFVDSSGLSLVECKG
Ga0181390_118251713300017719SeawaterMSRKSKKSPFRSTFEEDVAKILQEFDYEPFTIPYTISRSYRPDFVDASGLYLIE
Ga0181422_101378243300017762SeawaterMSRKSQRSNLRKFRSTFEDDVSKILTGFEYEPFTVPYT
Ga0181410_114131013300017763SeawaterMSRKSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISRSYRPDFVDASGLYLIECKG
Ga0181385_110627723300017764SeawaterMSRRSKKSKFRSTFEDDVSKILTGFDYEPFTVPYTIQRSYRPDFV
Ga0181413_104338533300017765SeawaterMSRRSKKSAFRSTFEEDVSKILKDFDYEPFTVPYVISRSYRPDFVHNASGTLVECKGYF
Ga0181413_107730713300017765SeawaterMSRRSKKLKFRSNFEHIVSKILKGFAYEPFMVPYTIYRKYCPDFVHTS
Ga0187217_101140623300017770SeawaterMSRRSKKSTFRSTFEEDVSKILKDFDYEPFTVPYVISRSYRPDFVHNASGTLVE
Ga0181425_119962613300017771SeawaterMSRKSKKSKFRSIFEEETAKVLEGFEYEPFTVPYTTH
Ga0181430_105540713300017772SeawaterMSRKSRKSKFRSVFEEHTAEVLKGFEYEPYTVPYTIHRNYTP
Ga0181380_117189013300017782SeawaterMSRRSKKSAFRSTFEEDVSKILKGFDYEPFTVPYT
Ga0181380_119367713300017782SeawaterMNRRSKKSKFRSTFEDDVSKILKDFDYEPFTVPYIISRSYRPDFVHSASNT
Ga0181587_1009490613300017968Salt MarshMSRRFQKLSFRSKFEKDVSQHLHGFLYEPFTVPYTIHRNYKP
Ga0193985_103418513300019699SedimentMSRRSKKSKFRSVFEEHTAEVLKGFEYEPYTVPYTIHRNYTPDFVHVPSNTLV
Ga0193993_104336723300019711SedimentMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPDFVHIASNTLVECKGFFREGDT
Ga0193966_102150623300019715SedimentMSRRFQKLNFRSKFEKDVSQHLHGFLYEPFTVPYTIHRN
Ga0193977_100308633300019719SedimentMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPDFVHIASNT
Ga0194011_101324413300019721SedimentMSRRFQKLNFRSKFEKDVSQHLHGFLYEPFTVPYTIH
Ga0193990_105728523300019735SedimentMSRRSKKSRFRSTFEEDVSKLLKGFDYEPFTVPYTIQRSYRPDFVHSASGVLVE
Ga0194020_103654623300019741SedimentMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPDFVHIASNTLVECKGFFREGD
Ga0194008_103652613300019746SedimentMSRRFQKLNFRSKFEKDVSQHLHGFLYEPFTVPYTIHRNYKPDF
Ga0193978_101714923300019747SedimentMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPDFVHIASNTLVECKGFFR
Ga0193983_105882823300019749SedimentMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPDFVHIASNTLVECK
Ga0194023_113491613300019756FreshwaterMSRRSQKSVFRSKFEENVAKVLRGFEYEPITVPYVIHRNYRPDFVHAATGTVVECKGF
Ga0194024_112678923300019765FreshwaterMSRKSQKSIFRSKFEETVAKVLRGFEYEPITIPYVINRNYRPDFVHAATGTVVECKGFFR
Ga0181575_1068650423300020055Salt MarshMSRRSQKSVFRSKFEENVSKVLKGFEYEPFTIPYVIHRNYRPDFVHAASGTVV
Ga0210309_114902013300021317EstuarineMSRKSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISRSYRPDFVDVSGLYLIECKG
Ga0210301_107145213300021325EstuarineMSRKSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISR
Ga0213858_10000100513300021356SeawaterMSRKSRRSPLGKFRSAFEDDVSKILTGFDYEPFTVPYTIERSYRPDFVHS
Ga0213869_1007054813300021375SeawaterMSRKYKKSKFRSVFEEHTAEVLKGFEYEPYTVPYTIHRNYTPDFVHVPSNTLVEC
Ga0213864_1003924613300021379SeawaterMSRRFKKSKFRSTFEEDVAKILKGFDYEPFTVPYTIERNYRPDFVHRSSGVLVECKGFFREG
Ga0222717_1009630743300021957Estuarine WaterMNRRSKKSKFRSTFEEDVSKILKEFNYEPFTIPYTISRSYRPDFVDVSGLYLIECKGYFR
Ga0222717_1040369813300021957Estuarine WaterMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPDFVHIASNTLVECKGFFREGDTKKYKS
Ga0222718_1056163813300021958Estuarine WaterMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPD
Ga0222714_1038362513300021961Estuarine WaterMSRKYKKSKFRSVFEEHTAEVLKGFEYEPYTVPYTIHRNYTPDFVHV
Ga0212025_102544013300022057AqueousMSRRSKKSAFRSTFEEDVSKILKGFDYEPFTVPYIIERSYRPDFVHNA
Ga0212023_104473923300022061AqueousMSRRSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISRSYRPDFVDASGLYLIECKGYF
Ga0212024_107495313300022065AqueousMSRKSQRSKFRSLFEKDVSKLLKGFQYEPFTIPYTIHRNYRP
Ga0212024_108138213300022065AqueousMNRRSQKSKFRSVFEEHTAEVLEGFEYEPYTVPYTI
Ga0212021_112509723300022068AqueousMSRKSQRSKFRSLFEKDVAKLLKGFQYEPFTIPYTIHRN
Ga0196889_107377023300022072AqueousMSRRSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISRSYRPDFVDV
Ga0196893_100496933300022159AqueousMSRRSKKSRFRSTFEEDVSKLLKGFDYEPFTVPYTIQRSYRPDFF
Ga0212027_101534313300022168AqueousMSRRSRRSRFRSTFEEDVSKLLKGFDYEPFTVPYTIQRSYRPDFVHSASGVLVECI
Ga0196891_102762813300022183AqueousMSRRSRRSRFRSTFEEDVSKLLKGFDYEPFTVPYTIQRSYRPDFVHSASGVLVECKGYFR
Ga0196899_103718243300022187AqueousMSRRSKKSAFRSTFEEDVSKILKGFDYEPFTVPYTIERSYRPDFVHHASG
Ga0244775_1067202813300024346EstuarineMSRKSKKSAFRSTFEEDVAKILQEFNYEPFTIPYTIS
Ga0208667_100089713300025070MarineMSRKSKKSRFRSTFEDDVSKVLKEFDYEPFTIPYTISRSYR
Ga0208666_107054513300025102MarineMSRRSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISRSYRPDFVDAS
Ga0208013_108533423300025103MarineMSRKSKKSRFRSTFEDDVSKVLKEFDYEPFTIPYTISRSYRPDFVDSSGLF
Ga0208303_107452513300025543AqueousMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPDFVHI
Ga0208660_109962513300025570AqueousMNRRSRKSKFRSVFEEHTAEVLKGFEYEPYTVPYTIHRNYTPDFVHVP
Ga0208660_111609813300025570AqueousMSRRSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISRSYRPDFVDASGLYLIECK
Ga0208149_100950343300025610AqueousMSRRSKKSTFRSTFEEDVSKILKGFDYEPFTVPYTIERSYRPDFVHHASGVLVE
Ga0208149_106566613300025610AqueousMSRRSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISR
Ga0208643_103509933300025645AqueousMSRRSQKSVFRSKFEENVAKVLRGFEYEPITVPYVIHRNYRPDFVHAATGTVVEC
Ga0208428_113440113300025653AqueousMSRKSKKSKFRSIFEEETAKVLEGFEYEPFTVPYTTHRNYRPDFVHMASDTLVECKGFFREG
Ga0209251_104232943300025668MarineMSRKSKKSPFRSTFEEDVAKILQEFDYEPFTIPYTISRSYRPDFVDASGLY
Ga0209406_116080513300025694Pelagic MarineMNRKSRKSKFRSVFEEHTAEVLKGFEYEPYTVPYTIHRN
Ga0209305_122335313300025712Pelagic MarineMSRRSKKSKFRSVFEEETAKVLEGFEYEPYMVPYITKRKY
Ga0208425_101264713300025803AqueousMSRRSKKSRFRSTFEEDVSKLLKGFDYEPFTVPYTIERSYRPDFVHSASG
Ga0208547_101954443300025828AqueousMSRRSKKSTFRSTFEEDVSKILKGFDYEPFTVPYTIERSYRPDFVHHA
Ga0208917_111566523300025840AqueousMSRKYKNSKFRSTFEEDVSKILKDFDYEPFTIPYVISR
Ga0208645_106265343300025853AqueousMSRRSKKSPFRSTFEEDVAKILQEFNYEPFTIPYTISRSYRPDFVDASGLYLIECKGYFR
Ga0208645_119918013300025853AqueousMSRRSQKSTFRSTFEEDVSKILKEFDYEPFTVPYTIERSY
Ga0208645_124109723300025853AqueousMSRRSRRSRFRSTFEEDVSKLLKGFDYEPFTVPYTIQRSYRPDFVHSASGVLVECK
Ga0209533_126508813300025874Pelagic MarineMSRRSKKSKFRSVFEEETAKVLEGFEYEPYMVPYTTKR
Ga0208644_129301323300025889AqueousMSRKSQRSKFRSLFEKDVAKLLKGFQYEPFTIPYTIHRNYRPDFVHSKSGTVVEC
Ga0209630_1043418023300025892Pelagic MarineMSRRSKKSKFRSVFEEETAKVLEGFEYEPYMVPYTIHRNYKP
Ga0209929_102307043300026187Pond WaterMSRRFKKSNFRSIFEEDVAKVLKGDFDYEPYSIPYTI
Ga0208020_101188713300027159EstuarineMSRKSKKSKFRSIFEEETAKVLEGFEYEPFTVPYTTHRNYRPDFVHMASDTLVECKGFFREGDTQ
Ga0256368_102953723300028125Sea-Ice BrineMSRKSKKSKFRSIFEEETAKVLEGFEYEPFTVPYTTHR
Ga0256368_106248313300028125Sea-Ice BrineMSRARSKSQFRSYFEEDVAKVLKKGFEYEPFTVPYTVHRRYCPDFV
Ga0315320_1001915963300031851SeawaterMSRKSRKSKFRSVFEEHTAEVLKGFEYEPYTVPYTIHRNYTPDFVHVPSNTLVE
Ga0315320_1063048323300031851SeawaterMSRKSKKSKFRSTFEEDVSKILQEFNYEPFTIPYTISRSYRPDFVDASGLYL
Ga0348336_116512_2_1573300034375AqueousMSPRFPKSKFRSEFEKNVAKVLKGFEYEPFTIPYVIHRNYRPDFVHGASGTI
Ga0348337_053935_3_1253300034418AqueousMSRRSKKSTFRSTFEEDVSKILKGFDYEPFTVPYTIERSYR
Ga0348337_084167_922_10953300034418AqueousMSRRSKKSKFRSVFEEHTAEVLKGFEYEPFTIPYTIHRNYRPDFVHIASNTLVECKGF
Ga0348337_164762_449_6043300034418AqueousMNRRSKRSKFRSTFEEDVSKILQEFNYEPFTIPYTISRSYRPDFVDASGLYL


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