Sample 3300019714

Basic Information
IMG/M Taxon OID	3300019714 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0129088 \| Gp0217641 \| Ga0193975
Sample Name	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_2-3_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300019714 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0129088 | Gp0217641 | Ga0193975

Sample Name

Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_2-3_MG

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	106284110
Sequencing Scaffolds	39
Novel Protein Genes	41
Associated Families	37

Dataset Contents

Total Genome Size

106284110

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
Not Available	29
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium

All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium

All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon

Ecosystem Assignment (GOLD)
Name	Microbial Communities From Sediments And Microbial Mats In Various Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Ecosystem Assignment (GOLD)

Name

Microbial Communities From Sediments And Microbial Mats In Various Locations

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater river biome → river → sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

USA: Delaware

Coordinates

Lat. (^o)

38.7906

Long. (^o)

-75.1638

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001488	Metagenome / Metatranscriptome	686	Y
F003361	Metagenome / Metatranscriptome	492	Y
F004278	Metagenome	445	Y
F004928	Metagenome / Metatranscriptome	418	Y
F008424	Metagenome / Metatranscriptome	333	Y
F014086	Metagenome / Metatranscriptome	266	Y
F016808	Metagenome	244	Y
F018371	Metagenome / Metatranscriptome	235	Y
F021019	Metagenome / Metatranscriptome	221	Y
F022317	Metagenome / Metatranscriptome	215	Y
F029111	Metagenome / Metatranscriptome	189	Y
F034559	Metagenome	174	N
F036728	Metagenome / Metatranscriptome	169	N
F037736	Metagenome / Metatranscriptome	167	Y
F041207	Metagenome / Metatranscriptome	160	Y
F042907	Metagenome / Metatranscriptome	157	Y
F045765	Metagenome / Metatranscriptome	152	N
F047065	Metagenome / Metatranscriptome	150	Y
F047575	Metagenome / Metatranscriptome	149	Y
F050382	Metagenome / Metatranscriptome	145	Y
F062271	Metagenome / Metatranscriptome	131	N
F062772	Metagenome	130	Y
F063710	Metagenome	129	Y
F064729	Metagenome	128	Y
F069469	Metagenome / Metatranscriptome	124	N
F070125	Metagenome / Metatranscriptome	123	N
F073262	Metagenome	120	Y
F074893	Metagenome / Metatranscriptome	119	Y
F077328	Metagenome / Metatranscriptome	117	Y
F082105	Metagenome / Metatranscriptome	113	Y
F082544	Metagenome	113	Y
F085725	Metagenome	111	Y
F087210	Metagenome / Metatranscriptome	110	Y
F088283	Metagenome / Metatranscriptome	109	Y
F090406	Metagenome	108	N
F103273	Metagenome / Metatranscriptome	101	Y
F103282	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0193975_1002811	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
Ga0193975_1005595	Not Available	1142	Open in IMG/M
Ga0193975_1006317	Not Available	1094	Open in IMG/M
Ga0193975_1006658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Pseudohalioglobus → Pseudohalioglobus sediminis	1073	Open in IMG/M
Ga0193975_1011122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	897	Open in IMG/M
Ga0193975_1011306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Sedimenticola → Sedimenticola thiotaurini	892	Open in IMG/M
Ga0193975_1014450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
Ga0193975_1014915	Not Available	809	Open in IMG/M
Ga0193975_1016027	Not Available	788	Open in IMG/M
Ga0193975_1016870	Not Available	774	Open in IMG/M
Ga0193975_1017620	Not Available	762	Open in IMG/M
Ga0193975_1019019	Not Available	742	Open in IMG/M
Ga0193975_1020606	Not Available	722	Open in IMG/M
Ga0193975_1022065	Not Available	705	Open in IMG/M
Ga0193975_1022612	Not Available	699	Open in IMG/M
Ga0193975_1025677	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	670	Open in IMG/M
Ga0193975_1027037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	658	Open in IMG/M
Ga0193975_1027897	Not Available	651	Open in IMG/M
Ga0193975_1028829	Not Available	643	Open in IMG/M
Ga0193975_1030281	Not Available	633	Open in IMG/M
Ga0193975_1030550	Not Available	631	Open in IMG/M
Ga0193975_1031055	Not Available	627	Open in IMG/M
Ga0193975_1031140	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	627	Open in IMG/M
Ga0193975_1035112	Not Available	602	Open in IMG/M
Ga0193975_1038808	Not Available	583	Open in IMG/M
Ga0193975_1039213	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	581	Open in IMG/M
Ga0193975_1039974	Not Available	577	Open in IMG/M
Ga0193975_1042584	Not Available	565	Open in IMG/M
Ga0193975_1044114	Not Available	559	Open in IMG/M
Ga0193975_1051679	Not Available	531	Open in IMG/M
Ga0193975_1053426	Not Available	525	Open in IMG/M
Ga0193975_1054533	Not Available	522	Open in IMG/M
Ga0193975_1054600	Not Available	521	Open in IMG/M
Ga0193975_1056907	Not Available	514	Open in IMG/M
Ga0193975_1057077	Not Available	514	Open in IMG/M
Ga0193975_1059831	Not Available	506	Open in IMG/M
Ga0193975_1061661	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	501	Open in IMG/M
Ga0193975_1061763	Not Available	501	Open in IMG/M
Ga0193975_1061838	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0193975_1002811	Ga0193975_10028112	F088283	MKTRALILLTSLGVFSGCATGSDVTGSCSPSCVAFEGNTIELSENRFTWDKFTDEVTVDDTGNEVDPFPGFPVRGVYAIEDDVVSLTTDVGELAAELYIVRRPGQVYLLTESEFEAWQKDSTVPDCALLLGSGE
Ga0193975_1003651	Ga0193975_10036512	F087210	MRFLIAALALAGAGTALAHTPDAGFLSSFGHQLTSLHHSPAAMLLGVLVLGLLLVAVRSLKTR
Ga0193975_1005595	Ga0193975_10055952	F022317	MSTIKIDTKTLAPIVITALLSAFGWVFNSIEEIKSHQNACDAMVVEMNSELDMLESNFTELLFKLNG
Ga0193975_1006317	Ga0193975_10063171	F029111	GGGNRTAGSSPDPDDSRTVSRTGFDKNTSKEHEENALPDILVTMSQVPDVNRELVEVGAMFAVLEALRRSGRR
Ga0193975_1006658	Ga0193975_10066581	F090406	NVLWWIIVLVGLTSCSTTLTSVDGKGGNVYALPPTVVDQILKDAMSAEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIVDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGTGAAFVEFAD
Ga0193975_1011122	Ga0193975_10111221	F004928	MSQALHSIESEPNHTVEIVVHITETLGEQQRGDLVVALEGIGGIATAEFCPLRYHLMLVRYDRDLYSSQDVLERVTSHDVSARLIGSV
Ga0193975_1011306	Ga0193975_10113062	F062772	MNLNGIWSSELGGAYGWEPIGTFFLKDGHLTGGGRNHFSVGSYKTKGDGAVFHIVINQFGKKRALFGQKSEQVRVVVKGNRNDDKIIGEATLPGHVEYGICVRFQRRADLPEEKTH
Ga0193975_1014450	Ga0193975_10144502	F103282	VRGESGINFTGLYICGAIAFVMLVLKLSVIDTWSWWRVLLPIGLFFGFTVTHILVALIYLSFAHIPERPDGDEAEILEPHSIN
Ga0193975_1014915	Ga0193975_10149151	F074893	MEPAQLHAIAGEGSLTIRINGPMDLLLTMPLREYCHNSGAAYRSYIVDFQNVSIVRDSGLALLLMLKRWTNRAGATLSVINGNRDLMR
Ga0193975_1016027	Ga0193975_10160271	F063710	MNKPRQRSLRVRVEHEPNRFSDDCLERIYEQLHPTKSREVTPDKNNKQGEVEPQKGKGGR
Ga0193975_1016870	Ga0193975_10168701	F037736	VPYRVQLDGLQILWLLANPLWTHGIGESGSKTITGWLLMGAAVTNHIYWLDTNPFTGLLLHPKSYRIMHLPFVHSNVCLV
Ga0193975_1017620	Ga0193975_10176201	F073262	LFESSQCQPSRPKCTSCQWSAEIADDPTGHLFGTARRHANNCLEGLRAPMGVATQPLALQSTANTTGTNLNESFGRPTAMATLQDKCSMLVASLLAVCEVATTANLPVHWSTVHATLKATEWAACHANALDSAGSKTNKPAPVTSPPLVQDMGNGHFAASSTNNPTEGTSVFCIRPSCMPHHQECLNHNRTFEVLVQGVGTASFEAQQMVLINDELKLLQSTEEFRGCVNGYQVFLRTFLGALEKITRQFMSF
Ga0193975_1019019	Ga0193975_10190194	F008424	METKVNKLERLLYLTLIAGICFFTGVFYTYYKIDQRLWNEEILKARDIETRYLNYPTKRNYKR
Ga0193975_1020606	Ga0193975_10206062	F077328	AFKLGKLGSPRWNNDSTKVLVKYELPITDGTLDAVKGISGITALSHSEVIEEMKKDEWSG
Ga0193975_1022065	Ga0193975_10220651	F085725	MNLLLATVLLLISAVAVGFYLLFLGLRKRKRSPGLGLTHAGLALSGLIVLFTEIFTGPTDKLNNFAALFLFFALVGGGMVFALHEENKPPSMVAVTVHAIMGLFGISLLIINLF
Ga0193975_1022612	Ga0193975_10226121	F004278	MIRTLFNDIIQAAIKWWKRVWFEAKLKASLDMIELENRIESEIEREEQNKPLYIEHPIDPVLQPGESQKLGGAMELRAPWYNDKIQPQRQDGVQDLSPGSTQS
Ga0193975_1025677	Ga0193975_10256771	F029111	MLISGGGGNRTAGSSPDPDESPTVSRTGIDENTSKEPEENALVDILMTMSQIPVPDVALELAEVSALHALFRAVARDAEGS
Ga0193975_1027037	Ga0193975_10270372	F082105	SIVRMVVLIWRDPPRCAGQPNATVQPAVAGTVMPIDSVGSGRVNEKK
Ga0193975_1027897	Ga0193975_10278972	F085725	QYQVNSHYSYNSRCVSYKPYSLSSVITISMNLLPLLFLFLISAVGIGIYLVFLGLHQRKRSPGLGLTHAGLALSGFIVLFIEIYSGPIDKLNNIAALLLFFAILGGGMVFALNEEGRPPSMAAVIAHATMGLAGISLLIINLFLS
Ga0193975_1028829	Ga0193975_10288291	F016808	MIDNIIYKVFGIVDNFMGYLFDRFVSDDPRLKKKKKKXLKTLKIL
Ga0193975_1030281	Ga0193975_10302812	F064729	MGDLKEWLRYWRKVISKCSKIHKDSRVHKRAYAELSDYLNSVEESANDGELDTTVLAAVRFMQRMHELEKEIGLHVLEKKVHSTHKE
Ga0193975_1030550	Ga0193975_10305502	F041207	MTHKATQQEELERIDTMTILEAVAYANRLSKRLSSYECTDEEKTNALELLGRLTASVRFLKITLEPVYSRAI
Ga0193975_1031055	Ga0193975_10310553	F082544	MKDKQTQGTAKVVPIEQYYNDLSRIIDDAEWMGEDDTVELYLPEKEQIKRQMDEGELWYPNF
Ga0193975_1031140	Ga0193975_10311401	F001488	MARLELTLNFPKNFEIKTFNVKSEKKLSPLAKLILQSVQFKHFYYVRDDISYLLKSNPIERDFLLQALYSIVISLQNNLSINFFDMWVYEVYINKVSTHNKFMSQKSQNLEPGEYITIKLAYGSSVSQEKK
Ga0193975_1035112	Ga0193975_10351123	F014086	MKRESKKAPKIIEFPNQPTVYKSECCNQPIDVKTSGIKMRGAGAATKGTMAR
Ga0193975_1038808	Ga0193975_10388082	F042907	MTDEMRIEAEEKLFNDLRDEPCIVCGDPYLHVLGSYTPEEPENSKNREDKAPVLYYTLCKTCFNNGRIPTALIESAYKSKFGKIAA
Ga0193975_1039213	Ga0193975_10392131	F045765	MKHHSSKDENTTAIKIDDKLYDLLRKFCDKEGRRLKDFVEDALENAIYTDESIKILNAEIKSLKKKEAKYDYAFRRGFQKGFYISFCALHGQILLGTDDEEYEILKNDPFRVSKGAQLDLFR
Ga0193975_1039974	Ga0193975_10399741	F103273	AIRPVVRQTIADLEALTAAQVVGREPSRYEIEVERGSLRAALDACCDELREGCGLPTSPGLSAQVQKMHAADPDWTESFSNALEAYRSAACKELDVSLASLALPPESSSALETP
Ga0193975_1042584	Ga0193975_10425842	F050382	KSQIRSKSQLFGILNFGHCDLFGICDLLFEILIVKT
Ga0193975_1044114	Ga0193975_10441141	F003361	CMKLTLNGALDLSRSINSQTIWNKRSTDYFNELAKELKQDSLNALENKPSPRSQAGRGNKNTGATRRSVFTAKLGNTNRLRMSEGFKLATDRQYAPFIHGKPIFRGFSPIRRTRPFFPPYKEGSSLAKWAKRGQPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKDRGQEMLELIARDIARS
Ga0193975_1044971	Ga0193975_10449712	F021019	MNKYLVKIFTKNLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQYNSTANDFYITY
Ga0193975_1051679	Ga0193975_10516791	F069469	RGNSIMKVKILIGSDFSLDKKDKRVEAGEVLDLPDKIAKALIKNNAAEKFDSKMMKEEEE
Ga0193975_1053426	Ga0193975_10534261	F062271	MSDKQQAVIQILHKEWALEQGYLIPSSKRQAASIKRQAASVDVEIYNDTDYKATSIKRQALKEIPDN
Ga0193975_1054533	Ga0193975_10545331	F050382	NLDIKNPKSQAPNYKKIPNLNIKISNKIKSQLFGICVLLFEIFYY
Ga0193975_1054600	Ga0193975_10546002	F070125	QWIEALHAYRDDSERLFGLVASLANLLDRTLVVETMESVLGITAVHDGDCVIFDDLAIRFGSDDRVKSVFRTIGGSGTGN
Ga0193975_1056907	Ga0193975_10569071	F018371	MAISNVIQPNRLTNMQEMETHVTGPDGANRLFTYSGMAEVELCGGLPHPRWSLEVVCFDIGRIYDTANGEGVINIVATASLAGTRTDGVASFAGWQIFGAAGELDDDSNRVRMNIAAGA
Ga0193975_1057077	Ga0193975_10570771	F047065	MTDLLNKFSEAAKVVSSSKTPMWECIKQAYVDHLSDISTDSLPEEIQIFYDSVKLRITSVEALGHIDNDEAGYIANDIMYMADVISSGLRKP
Ga0193975_1059831	Ga0193975_10598311	F073262	HLIRATWHHANNCLEGLCAPVGITTQLLALQSTANMMGTNLNASLNWPKAMATSQDKCPMLVASLLAVCEVATPADLPVHWSTVPATLKATEWAACHANALDLAGSKTNKLAPVASPPLAQDMGNGCFTSASTNNPTEWMSIFCIQPHCMPRHQECLNHNRTFEVLVQ
Ga0193975_1061661	Ga0193975_10616611	F034559	RVSQGKRSEVSLALHLQEQTRRGSQEVSLVRRQTDTGANLMKVIEGHFGDKDEKLPVSTVFGAISAVEDLDSYEDAFCIVKSEDYVVISTNLDTQQLYFLLDQIKLSLITRGDYEI
Ga0193975_1061763	Ga0193975_10617632	F036728	MVLKQKIELPLDCRYIFVNYNNNLKPFKTTKEVLHFIEGNRLEIVDQQTFNESYVVV
Ga0193975_1061838	Ga0193975_10618382	F047575	MEERDVTQILSAADDSVSLINGVNDGSWNVDGMEQSEINDMVQRNVDHLEIILAY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300019714: Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_2-3_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences