NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300019243

3300019243: Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNMR2_MetaT (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300019243 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0116197 | Gp0197971 | Ga0179953
Sample NameActive sludge microbial communities of municipal wastewater-treating anaerobic digesters from Japan ? AD_JPNMR2_MetaT (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size203511062
Sequencing Scaffolds97
Novel Protein Genes102
Associated Families64

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available57
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium1
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales1
All Organisms → cellular organisms → Bacteria → Dictyoglomi → Dictyoglomia → Dictyoglomales → Dictyoglomaceae → Dictyoglomus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group2
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Fervidobacteriaceae → Fervidobacterium → Fervidobacterium thailandense1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → unclassified Eubacteriales → Clostridiales bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → unclassified Anaerolineaceae → Anaerolineaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes4
All Organisms → cellular organisms → Bacteria8
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → unclassified Bacteroidales → Bacteroidales bacterium3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → unclassified Alcaligenaceae → Alcaligenaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Tissierellia → Tissierellales → Tissierellaceae → Anaerosalibacter → Anaerosalibacter bizertensis1
All Organisms → Viruses → environmental samples → uncultured virus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → unclassified Clostridiaceae → Clostridiaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. AF50-31
All Organisms → Viruses1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium ADurb.Bin0351
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus albus1
All Organisms → cellular organisms → Bacteria → Thermotogae → Thermotogae → Thermotogales → Fervidobacteriaceae → Fervidobacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Hydrogenoanaerobacterium → Hydrogenoanaerobacterium saccharovorans1
All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Clostridiales Family XVII. Incertae Sedis → Thermaerobacter → Thermaerobacter marianensis → Thermaerobacter marianensis DSM 128851
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Oscillospiraceae bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameActive Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations
TypeEngineered
TaxonomyEngineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationJapan: Gunma Prefecture
CoordinatesLat. (o)36.29Long. (o)139.38Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

Associated Scaffolds

Sequences


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