3300019073: Metatranscriptome of marine microbial communities from Baltic Sea - GS683_0p1

Overview

Basic Information

• IMG/M Taxon OID: 3300019073
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0129055 | Gp0214183 | Ga0188855
• Sample Name: Metatranscriptome of marine microbial communities from Baltic Sea - GS683_0p1
• Sequencing Status: Permanent Draft
• Sequencing Center: J. Craig Venter Institute (JCVI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 9630926
• Sequencing Scaffolds: 20
• Novel Protein Genes: 28
• Associated Families: 27

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	2
Not Available	13
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Metatranscriptome Of Marine Microbial Communities From Baltic Sea
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Metatranscriptome Of Marine Microbial Communities From Baltic Sea

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Baltic Sea
• Coordinates
  • Lat. (^o): 54.570232
  • Long. (^o): 11.332183
  • Alt. (m): N/A
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000375	Metagenome / Metatranscriptome	1217	Y
F000896	Metagenome / Metatranscriptome	845	Y
F002512	Metagenome / Metatranscriptome	553	Y
F003051	Metagenome / Metatranscriptome	510	Y
F003976	Metagenome / Metatranscriptome	459	Y
F007749	Metagenome / Metatranscriptome	345	Y
F009532	Metagenome / Metatranscriptome	316	Y
F009636	Metagenome / Metatranscriptome	315	Y
F010318	Metagenome / Metatranscriptome	305	Y
F010948	Metagenome / Metatranscriptome	297	Y
F012916	Metagenome / Metatranscriptome	276	Y
F020386	Metagenome / Metatranscriptome	224	Y
F020816	Metagenome / Metatranscriptome	222	N
F028968	Metagenome / Metatranscriptome	190	Y
F028971	Metagenome / Metatranscriptome	190	Y
F031527	Metagenome / Metatranscriptome	182	Y
F032823	Metagenome / Metatranscriptome	179	Y
F035272	Metagenome / Metatranscriptome	172	N
F040854	Metagenome / Metatranscriptome	161	Y
F050298	Metagenome / Metatranscriptome	145	Y
F051178	Metagenome / Metatranscriptome	144	N
F052632	Metagenome / Metatranscriptome	142	Y
F063493	Metagenome / Metatranscriptome	129	N
F071273	Metagenome / Metatranscriptome	122	N
F078928	Metagenome / Metatranscriptome	116	Y
F096736	Metagenome / Metatranscriptome	104	Y
F102084	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0188855_1000009	All Organisms → Viruses → Predicted Viral	2243
Ga0188855_1000039	All Organisms → Viruses → Predicted Viral	1614
Ga0188855_1000209	Not Available	1111
Ga0188855_1000335	Not Available	960
Ga0188855_1000365	Not Available	927
Ga0188855_1000388	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	914
Ga0188855_1000510	Not Available	840
Ga0188855_1000610	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	789
Ga0188855_1000626	Not Available	785
Ga0188855_1000724	Not Available	745
Ga0188855_1000727	Not Available	744
Ga0188855_1000729	Not Available	744
Ga0188855_1000937	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Roseobacter phage CRP-13	679
Ga0188855_1001208	Not Available	613
Ga0188855_1001291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	599
Ga0188855_1001414	Not Available	578
Ga0188855_1001574	Not Available	555
Ga0188855_1001702	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	538
Ga0188855_1001903	Not Available	514
Ga0188855_1001982	Not Available	505

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0188855_1000009	Ga0188855_10000098	F102084	MNTDKHTSNDTNSEKTNTQLMISPLPNLITTGLIFLTVFAIILAGYIHGHMSISAVYKTLNP
Ga0188855_1000039	Ga0188855_10000392	F002512	MSKEMTTTEIAALNKEFAVGNAFTKWKFMQTDAFKTLPDAVRYTVEKECLTHYFNMITDGMTDWKGPIKAMIPIALLNPMRKAVEYFTGTELYVMEQVDNQFKVFAKGYYMMGE
Ga0188855_1000209	Ga0188855_10002092	F032823	PKIRKTIEKNIKLNNENLCCVPFFKKADLNAITKSSLLGSIISNIQIA
Ga0188855_1000273	Ga0188855_10002732	F078928	FTIGRHRGAKRMIREAQKGKEDLSEDVYWDRLDTANHLADECKGRIQQIFNDTFGA
Ga0188855_1000291	Ga0188855_10002912	F078928	RLTIGRHRGAKRMIREAQKGKDEQMEDVYWDRMDTANRLADDCKARIQHIFNDTFGA
Ga0188855_1000335	Ga0188855_10003351	F063493	MQTIFLIVLAVAIVGYLVMNREGLRWDRGFAGFRPAVTGVITEGNLEITGNPVEDVAIKALMIKKIVDATTEEIFRTKGLKMFPIETIFIQVFDSPDKIKELKQKRPDVYDAYVKFLQARDKDAVLTRNGDGTEQEQLARTALINYLEALKRDQDYNTVPDNVPATYRCRPIVS
Ga0188855_1000365	Ga0188855_10003651	F028971	MIITKDTELTPMSKEEFRAWEEYVIKYNHDNSTDQIAYEVVWNKDEYKVKLLDLRV
Ga0188855_1000365	Ga0188855_10003653	F003051	MKTKILKSKVVIDMSVSEYDTLFKYIGKLETMLNTLHETNDLWLSDVHNLSSLQWELVEMLDAEWDSSTYRYVKRGNK
Ga0188855_1000388	Ga0188855_10003883	F007749	TWVSAAEVMTYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYTDSLTTSPGGDATLGTLMYCAALWRSRGSIENTYATFDGMGTATQQSLTPIVKQLLAIPRPQVA
Ga0188855_1000510	Ga0188855_10005102	F028968	MSALDDFEIEPGEGIPLGFKLEVMHPRAGCLVGAQYWEADGADDYNTFKIHLLWIALRWDWE
Ga0188855_1000610	Ga0188855_10006101	F000896	RLRTRGETIMKTDKINMVINLSILALLIYLAVSVKTIQDKVFPDPNIMIPMNMGYDNSAELKYNIQELLNNVLKDAINQQEKN
Ga0188855_1000626	Ga0188855_10006262	F003976	MSRLYNDYYFEKEDVLDTLEKLEMSVRFLNVWVNEPMGLENAKYVLEKNANRKFDWFDRNMVKELLEEEVR
Ga0188855_1000626	Ga0188855_10006263	F035272	MTYKQWCNLRELLTILSDEVDSKVCDDKVSEAFDDVWDMVDEIDTTQEIT
Ga0188855_1000626	Ga0188855_10006264	F020816	MKVYEITVSTTVQIDSLDDYAESKEHAIDIMWDRWGVYKDTLEITEVKTWEEDDEV
Ga0188855_1000724	Ga0188855_10007241	F071273	VDWDVDADGSLLAMEAIHNAILSRGTIIAAGAVYDTGTKQDYILEGNLTDTINNFTSLDGTVSGTLAQVLVEDIVNLGTVDSIDFTSGTVACSIKTTLKFA
Ga0188855_1000724	Ga0188855_10007242	F020386	MTISRNNFTSLPVAAEQEGVDVSYFTVDFIADVSAEVGDPQADSTVAGLALVQAAIMNLGINILATGPLGNSDTELTYMVRTDSLDVANHITANGIRDAIRAVDTAGRAAGATPRNTADFSTATVTLKDLAIAV
Ga0188855_1000727	Ga0188855_10007272	F009636	MGYFYQDWKEKKMFVENNEGQLVMNFGEAEKSMIENLENAVINLTEGASDEKRSGIAYLEYLVDCLKKNKVEIKWNIS
Ga0188855_1000729	Ga0188855_10007291	F031527	KQKNKMKTVYEYMTVFFAILGTLAMVAAVGAIETDQWLLGGAAVSTGIASYIMSLFSQQLYSEAK
Ga0188855_1000729	Ga0188855_10007293	F051178	MKKGKCTVCKKVFTVKKGESLIGKLGIIPVDLCKTHLKKVLSYDEMNLSDTRANG
Ga0188855_1000730	Ga0188855_10007301	F096736	MRKMGINKNYVVGIYDDSKFSFHMSRGQKFKEITEFFTRFKYFGPIVVGSSVNEVLDKACEHGVDYCIVQSVGHIIKDAFFFRHIE
Ga0188855_1000937	Ga0188855_10009372	F050298	MTKSITKITDLGYGWTGILYSDGTMRVQGDLADDVSRRLRLQECDCIDLPKASVDTLARIFKEIQEEMA
Ga0188855_1001208	Ga0188855_10012081	F040854	LHQLGREGYGFQMKRDIEATEEELSGKNLPFKSEK
Ga0188855_1001291	Ga0188855_10012913	F052632	MLVNGVNLMHHLSRCRLRLRKHMLEEKQLVFPSQLTQPKNSVEAIHQLFQGLLQSLRKLSSLYDQPSCLQ
Ga0188855_1001414	Ga0188855_10014141	F010948	MEWIFLGMITTLIVVGLYFARSTQDYIDEQNERYRKEKNNGXTKRSTLXNNR
Ga0188855_1001574	Ga0188855_10015742	F010318	EAPITFDLEELGIDWDNVKDYYIKYGTLYVEFKDGSSEEHEGNQGETDWKWSVQENILTEDWTLVEGLNXXIELYTKN
Ga0188855_1001702	Ga0188855_10017022	F000375	MAKLYDLEPMIMDCWHVCDDIQVVFKQIGDGEREPTQDELMNTLLGMQQLYQWKFEQLFNKYEDVLKAGQNKHE
Ga0188855_1001903	Ga0188855_10019031	F012916	LDENQLKKSEFAKAYAAVAKTDEGKTLITKSYKGE
Ga0188855_1001982	Ga0188855_10019822	F009532	EFEVLVDKVALRLAKGMKPHRVTLNKMYAYPIDSAYRHHRLTARVMEFKAEIAERNKEIADAFARIMSNPAQYETVGEPMPHNIKFLG