Sample 3300017548

Basic Information
IMG/M Taxon OID	3300017548 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127392 \| Gp0191736 \| Ga0182743
Sample Name	Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft OP (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0127392 | Gp0191736 | Ga0182743

Sample Name

Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft OP (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	589984846
Sequencing Scaffolds	22
Novel Protein Genes	22
Associated Families	13

Dataset Contents

Total Genome Size

589984846

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae → Klebsormidium → Klebsormidium nitens	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1
Not Available	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae → Klebsormidium → Klebsormidium nitens

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae

Not Available

All Organisms → cellular organisms → Bacteria → Terrabacteria group

Ecosystem Assignment (GOLD)
Name	Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Ecosystem Assignment (GOLD)

Name

Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Type

Environmental

Taxonomy

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost → Lignin-Adapted Enriched Soil Microbial Communities From Emeryville, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → anthropogenic environment → compost
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

terrestrial biome → anthropogenic environment → compost

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Soil (non-saline)

Location Information
Location	USA: Emeryville, California
Coordinates	Lat. (^o)	37.83	Long. (^o)	-122.29	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

USA: Emeryville, California

Coordinates

Lat. (^o)

37.83

Long. (^o)

-122.29

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001230	Metagenome / Metatranscriptome	741	Y
F006745	Metagenome	365	Y
F034190	Metagenome / Metatranscriptome	175	Y
F036417	Metagenome / Metatranscriptome	170	Y
F041209	Metagenome / Metatranscriptome	160	Y
F051903	Metagenome / Metatranscriptome	143	Y
F064527	Metagenome / Metatranscriptome	128	Y
F067255	Metagenome / Metatranscriptome	126	Y
F072103	Metagenome / Metatranscriptome	121	Y
F073391	Metagenome / Metatranscriptome	120	Y
F098955	Metagenome / Metatranscriptome	103	Y
F101520	Metagenome	102	Y
F104508	Metagenome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0182743_1000326	All Organisms → cellular organisms → Bacteria	65556	Open in IMG/M
Ga0182743_1006405	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	8046	Open in IMG/M
Ga0182743_1013739	All Organisms → cellular organisms → Bacteria	4463	Open in IMG/M
Ga0182743_1020522	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea	3297	Open in IMG/M
Ga0182743_1020937	All Organisms → cellular organisms → Bacteria → Proteobacteria	3249	Open in IMG/M
Ga0182743_1024072	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Klebsormidiophyceae → Klebsormidiales → Klebsormidiaceae → Klebsormidium → Klebsormidium nitens	2938	Open in IMG/M
Ga0182743_1031928	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	2398	Open in IMG/M
Ga0182743_1032744	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	2356	Open in IMG/M
Ga0182743_1046403	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1834	Open in IMG/M
Ga0182743_1052375	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria	1683	Open in IMG/M
Ga0182743_1055678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1611	Open in IMG/M
Ga0182743_1062880	Not Available	1477	Open in IMG/M
Ga0182743_1063914	Not Available	1460	Open in IMG/M
Ga0182743_1070100	Not Available	1369	Open in IMG/M
Ga0182743_1077429	Not Available	1275	Open in IMG/M
Ga0182743_1100384	Not Available	1061	Open in IMG/M
Ga0182743_1136749	Not Available	852	Open in IMG/M
Ga0182743_1166697	Not Available	741	Open in IMG/M
Ga0182743_1185223	Not Available	687	Open in IMG/M
Ga0182743_1204527	Not Available	641	Open in IMG/M
Ga0182743_1245939	All Organisms → cellular organisms → Bacteria → Terrabacteria group	563	Open in IMG/M
Ga0182743_1285155	Not Available	508	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182743_1000326	Ga0182743_100032612	F036417	MVYYARIPLRRLIPTVLVRLSTDDGVITFRARWKHSPLELQRFILFRLRKGRMLWFEDEWGHDLCFRPERILGAMVDGRETKELEWV
Ga0182743_1006405	Ga0182743_10064053	F098955	MSSPAIPVFSAGPFPVLKSVRIDEIDNEVELDVALLIQGQPNIIASSRFPLDDTWERIVKALTSGPARLGVAGIPHQVKTSVGIEEVYPSAYVGLECGNGERLVLAHIKGLNAEQPADAYAREVIHAILDGAGPDELGENIDDE
Ga0182743_1013739	Ga0182743_10137394	F104508	MDLPDVLREALELQILEQAPEEAAAAIGTAVGEHGATPVAQLLLEATAVAFRRMVSITDESFDLADLLTQLALDGAVPEHRLELLTDILTTAAATAGGIRPSVDALGTRLGEQDLLFGAWLGTLTGLRVVSMALEVTEAELVEDVLLAFEVPAAADPDAG
Ga0182743_1020522	Ga0182743_10205222	F051903	VSSEACEEIAKVRRKLQRIGTGHILVLDETHKREGDVDAYSIFLPGEPPYIETSATSSYAARYDMIACCNGSSVLPPIIYAPKERGKGVNQDMLLQYIRNLLAQAAGALDQYPLLLVLDRATIHSEEKIMQEFHDWGCQELTEVIRIPTASAKRLSPLDNSLFSLWRQRVLADGPLTKSNIKQRMSDAWNSITPEEIHAQYKHCGLLRHQDVYFDCPNPASHRHGS
Ga0182743_1020937	Ga0182743_10209372	F101520	MPDLNNRPGGPNLIVTAKSAHKVQFLDAATLTINTTIDMPGSTHELALSADGRTAYGSVYGDG
Ga0182743_1024072	Ga0182743_10240722	F034190	RIILEAFSELLGKDLVEAALKPVTTIHSAGCGGQSDLYDLNGPEISKWIKKERSANVLAAAASSSPPAATKATHSILSRWLQQLHSSLLHCRDWTGDDLESWRSVVDDIWQHWQAEAKTEPFPKLHMLRHSLEFAERHRFLGRASEAQIESFHAQFNTIFHKHHLNQGGNTAERLRRSLADASLRAVQTFLQP
Ga0182743_1031928	Ga0182743_10319281	F041209	MQDRPCVPAQRARELTCCAVSSALCDEIASLRRKLQKTATARIVFLDETALRLSAAPTHTIVLPGEQAYVLASDTSSYAARYDMIAVCTGVETLLPKVFTPKERAGAQVRGVNSAMLHQFIDDTLAQAVEGLDRYPLTLVLDKATIHKNVDAIRQAFHDRGSQAIKDILLMPPNAAKRMSPLDNALFHDWKEACRKRCPVTKRTIEQVMADAWNKLPARLLHSHYKNCGLVRGTDPYFDCPDPAGHQHAR
Ga0182743_1032744	Ga0182743_10327442	F041209	MRRKLQKIATARILFLDETALRLNAAPTHTIVVPGEQPFVLATDTSSYAARYDMIAVCTGVETLLPKVFTPAERRGAEVRGVNSAMLHQFIDDTLAQAVEGLDRYPLTLVLDKATIHKNTDAIRQAFHDRGSQAIKDILLMPPNAAKRMSPLDNALFHDWKESCRKRCPVTKLTIQRVMADAWNRLTAEQLHSHYKHCGLVRGTDPYFDCPDPVGHAHRSA
Ga0182743_1046403	Ga0182743_10464031	F041209	MGREEASMRACAAHELTRSAVSAALCDQIAELRLKLQKCRTTHLLFLDETALRLSEAPTRTVTLPSEQPFVLATETASYASRYDMIACCVGDRVLLPKIYTPQERSDAGVKGINGAMLRQFIDDMLAQAVEGLDRYPLTLVLDRAPIHMNLDSLLQAFRDRSSESICEIILMPPNAAKPLSPLDNSLFHDWKEEVRKGCPATRTNVARLMNNAWMKMDPKPHYKHCGLTRSKDPYFDCPAPAIHRHAS
Ga0182743_1052375	Ga0182743_10523751	F041209	MSCGLTLAAVSADLCEQIANLRRKLQRIGPARTLFLDETALRLNAAPNHTLALPGQQPLVLATDTSAYAARYDMIAVCSGVETLLPMVFTPAERRGADVRGINGAMLQQFIDNTLAQAVEGLDRYPLTLVLDRGPIHLNTQQLLQSFHDRSSESIKEILLLPPNAAKRMSPLDNALFHDWKERCRKRCPVTNHTIEGVMSDAWNQLPAALIHQHYKHCGLVRGQDPYFDCPDPDGHAHGS
Ga0182743_1055678	Ga0182743_10556781	F001230	VGPQTTSEAVANAHVWFEHNSGWAPPDEGTMEEWLADGVCRAPDECLISPDGWCEHGLASWW
Ga0182743_1062880	Ga0182743_10628801	F034190	SWLELQDCRAPGLTPFVGESAAFPHIWAVLQHLIDTCGAFLNGDWCFLNAVLGLMSPSATHPCPICIVSHKSLLSSSRYRTPTDRHSLHPQQRPLLSIPPERIVPTPLHLFLGISNRIILEAFGELLGKDLVEAALKPVTTVHSAGCGGAADLHDLNGPEISKWVKKQCSANMLAAAASSSSPSAATKATHSILSRWLEQLHSSLLHCRDWTGDELESWRSVVDDIWQHWRAEAKTEPFPKLHMLRHSLEFAERHRFLGRASEAQIESFHASFNVFFHKHHLNQGGNTTERLRRSLADASLRAVQPLLCASSSAPSTAFQVF
Ga0182743_1063914	Ga0182743_10639142	F034190	DAGGGSCVLGVTYSHQSVQHFAALLVYEGGDSWLELQDCCAEGLTPFVGESAAFPHIWAVLQYLIDRRGAFLNGDWCFLNAVLGLMAPSTTHPCPICIVGKNNLLSSSRYRTANDRHSIDRTHTPLLTIIPERIVPTPLHLFLGISNRIILDAYKELFGEAVVLQAVAAIKTVHSSGCGGASDLYDLNGPEISKFLKQNRSAAMLESPAAAVILPAAARASHSILSRWLEQLHCSLLHSRDWTPADIGAWCSVVDDIQQHWCAETSQAAFPKLHMLRHSLEFAERHRFLGRASEAQIESFHAQFNVLFHKQHRNQSSNTAERLRRSLADTALRAVQPLLNLPIEPTSASF
Ga0182743_1070100	Ga0182743_10701002	F041209	VSPGLCDQIADIRRKIRHLGTHKVLFLDETALRLSEAATHTIVLPGEQAFVEATETSSYSKRFDMIACCVGDQVLLPKIFTPKERKSADVKGINGPMLQQFIDDTLAQAVEGLDRYPLTLVLDRAPIHKDVDTLLQTFRDRSSESIKEILLLPPNASKRLSPLDNSLFHDWKQECRKHTPATEKNIVQIMNDAWMKMKPKAHYRNCGLTGNKDVYFDCPAPSKHKHQRE
Ga0182743_1077429	Ga0182743_10774291	F072103	MTTILDTVENYEAQLLDLVKKTQAPVVGYVAKGVELVGDRLPSVSYPKALPTPIEVVESQVAFAKKLIDVNTAIVTSVLETVAPVAGYAKPKKV
Ga0182743_1100384	Ga0182743_11003841	F067255	MDRRSLFGLTAAAGGLLAARTVLPANAQATGPAHHGEPKLEPLPKIAQQQQFRIGYTTNTRGGWESDVFLGISEG
Ga0182743_1136749	Ga0182743_11367491	F034190	LHLFLGICNRIILDAFSELLGKERVETALRSITTVHSAGCIGAADLHDLNGQEISKWIKRECSAGVLAAAASSASLPAATNASHSILSRWLQQLHHCLLHSDDWTAADIDAWRSVVSDIHCNWRAETSIAAFPKLHMLHHSVDFAERHRFLGRASEAQIESFHASFNALFHKQHRNQSRNIAERLRRSLADSALRAVQPLLQT
Ga0182743_1166697	Ga0182743_11666972	F006745	VRTSPSRHRSSSAVVIYVIVLMALQVFLVTVAAEAFLADEESLAWATAVASVVLFGGAAAFLRHLRP
Ga0182743_1185223	Ga0182743_11852231	F034190	DLHDLNGPEISKWIKKECSATLLAVAAASSAVPAATCASHSILSRWLQQLHHCLLHSDDWKAADIDAWRLVVSDIHQHWQAETSIAAFPKLHMLHHAVEFAERHRFLGRASEAQIESFHAQFNTLFHDHHLNQGDNTTERLRRCLADASLRAVQPFLHQ
Ga0182743_1204527	Ga0182743_12045271	F034190	DLHDLNGPEISKWIKKECSATLLAVAAASSAVPAATCASHSILSRWLQQLHHCLLHSDDWKAADIDAWRSVVSDIHCNWRAETSIAAFPKLHMLHHAVDFAERHRFLGRASEAQIESYHASFNTLFHKQHRNQSGNTAERLRRSLADSTLRAVQRFLQA
Ga0182743_1245939	Ga0182743_12459391	F073391	GLGLDAEELRITSCIADNSGGRIVGAQNADELSAALFGFLEELEVVVTTGFVEIESIGGLYPLATLTCEGGPANDSNPQGGDPFTYTFTEETNKVEAPVGVCDLTWTNPSGEETAVRVNVEADRTTFVRGSLLKFPQGAGEVYVVKAQDGTVIWQDQIEQGDWVWVLPGIYTCELAELVGDPILFSF
Ga0182743_1285155	Ga0182743_12851552	F064527	VSSASPADRVRTLLLRADNVLKSAPPTHHSDRERRAREALEEARSVAAGGGVDERVVALIERRLAALEAGGPG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300017548: Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft OP (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences