Metagenome Family F101520

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101520
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	69 residues
Representative Sequence	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMSATIDMPGSTHELALSADGRTAYGSVYGDGVFA
Number of Associated Samples	88
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.22 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	95.10 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.490 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (24.510 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.176 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 32.98% Coil/Unstructured: 67.02%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF12680	SnoaL_2	21.57
PF10458	Val_tRNA-synt_C	6.86
PF09084	NMT1	1.96
PF09601	DUF2459	0.98
PF12697	Abhydrolase_6	0.98
PF07690	MFS_1	0.98
PF13460	NAD_binding_10	0.98
PF12071	DUF3551	0.98
PF06165	Glyco_transf_36	0.98
PF01370	Epimerase	0.98
PF12867	DinB_2	0.98
PF00226	DnaJ	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.96
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	1.96
COG3459	Cellobiose phosphorylase	Carbohydrate transport and metabolism [G]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.47 %
Unclassified	root	N/A	23.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.47 %
Unclassified	root	N/A	23.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.49 %
Unclassified	root	N/A	23.53 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.86 %
Unclassified	root	N/A	23.53 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	47.06 %
Unclassified	root	N/A	23.53 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	42.16 %
Unclassified	root	N/A	23.53 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.98 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	27.45 %
Unclassified	root	N/A	23.53 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	27.45 %
Unclassified	root	N/A	23.53 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	27.45 %
Unclassified	root	N/A	23.53 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	1.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	27.45 %
Unclassified	root	N/A	23.53 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1.96 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.98 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004080\|Ga0062385_10190187	All Organisms → cellular organisms → Archaea → Euryarchaeota	1099	Open in IMG/M
3300004081\|Ga0063454_101182229	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300004092\|Ga0062389_104018725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	553	Open in IMG/M
3300004268\|Ga0066398_10091510	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300005332\|Ga0066388_102439694	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300005332\|Ga0066388_102622290	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300005332\|Ga0066388_105214710	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300005343\|Ga0070687_101343477	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300005356\|Ga0070674_102019699	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300005455\|Ga0070663_101075472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	702	Open in IMG/M
3300005458\|Ga0070681_11196370	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300005610\|Ga0070763_10721650	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300005764\|Ga0066903_104306606	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300005833\|Ga0074472_10169587	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300006049\|Ga0075417_10252880	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300006177\|Ga0075362_10156846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1094	Open in IMG/M
3300006178\|Ga0075367_10085990	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1908	Open in IMG/M
3300006195\|Ga0075366_10670855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300006353\|Ga0075370_11011443	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300006844\|Ga0075428_100822925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	986	Open in IMG/M
3300006844\|Ga0075428_102224920	All Organisms → cellular organisms → Bacteria → Proteobacteria	565	Open in IMG/M
3300006845\|Ga0075421_101434100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	758	Open in IMG/M
3300006854\|Ga0075425_100588600	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300007255\|Ga0099791_10516795	Not Available	580	Open in IMG/M
3300009147\|Ga0114129_12228666	All Organisms → cellular organisms → Bacteria → Proteobacteria	659	Open in IMG/M
3300009147\|Ga0114129_13347178	Not Available	517	Open in IMG/M
3300009156\|Ga0111538_11450535	Not Available	865	Open in IMG/M
3300009156\|Ga0111538_13451434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	549	Open in IMG/M
3300009632\|Ga0116102_1055519	Not Available	1230	Open in IMG/M
3300009839\|Ga0116223_10560218	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300010036\|Ga0126305_10669864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	700	Open in IMG/M
3300010041\|Ga0126312_10326344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1085	Open in IMG/M
3300010043\|Ga0126380_11357626	Not Available	622	Open in IMG/M
3300010043\|Ga0126380_11405649	Not Available	613	Open in IMG/M
3300010046\|Ga0126384_12222084	Not Available	528	Open in IMG/M
3300010159\|Ga0099796_10492886	Not Available	548	Open in IMG/M
3300010358\|Ga0126370_11115828	Not Available	728	Open in IMG/M
3300010360\|Ga0126372_11176272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	790	Open in IMG/M
3300010361\|Ga0126378_12746198	Not Available	562	Open in IMG/M
3300010362\|Ga0126377_12687441	Not Available	573	Open in IMG/M
3300010366\|Ga0126379_10198929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1926	Open in IMG/M
3300010366\|Ga0126379_11549378	Not Available	768	Open in IMG/M
3300010366\|Ga0126379_11815057	Not Available	714	Open in IMG/M
3300010371\|Ga0134125_12974354	Not Available	514	Open in IMG/M
3300010400\|Ga0134122_10491710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1108	Open in IMG/M
3300012203\|Ga0137399_10939770	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300012206\|Ga0137380_11596728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	537	Open in IMG/M
3300012357\|Ga0137384_11254396	Not Available	587	Open in IMG/M
3300012358\|Ga0137368_10101983	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2224	Open in IMG/M
3300012930\|Ga0137407_11007886	Not Available	789	Open in IMG/M
3300012948\|Ga0126375_10034939	All Organisms → cellular organisms → Bacteria	2538	Open in IMG/M
3300012948\|Ga0126375_10714033	Not Available	782	Open in IMG/M
3300014160\|Ga0181517_10537182	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300015242\|Ga0137412_11218179	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	528	Open in IMG/M
3300017548\|Ga0182743_1020937	All Organisms → cellular organisms → Bacteria → Proteobacteria	3249	Open in IMG/M
3300017955\|Ga0187817_10769901	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300017972\|Ga0187781_10645520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	764	Open in IMG/M
3300017972\|Ga0187781_11308775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	535	Open in IMG/M
3300017972\|Ga0187781_11469426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	505	Open in IMG/M
3300018042\|Ga0187871_10386555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	773	Open in IMG/M
3300018086\|Ga0187769_11048020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	617	Open in IMG/M
3300018429\|Ga0190272_11090663	Not Available	773	Open in IMG/M
3300018429\|Ga0190272_11812066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	637	Open in IMG/M
3300018465\|Ga0190269_10629392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	732	Open in IMG/M
3300018465\|Ga0190269_11552954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	549	Open in IMG/M
3300018466\|Ga0190268_11808288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	551	Open in IMG/M
3300018920\|Ga0190273_10972441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	697	Open in IMG/M
3300020170\|Ga0179594_10305927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	602	Open in IMG/M
3300021081\|Ga0210379_10151100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	988	Open in IMG/M
3300023259\|Ga0224551_1075718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	591	Open in IMG/M
3300024271\|Ga0224564_1128482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	521	Open in IMG/M
3300025453\|Ga0208455_1101543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	545	Open in IMG/M
3300026067\|Ga0207678_11121050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	697	Open in IMG/M
3300026078\|Ga0207702_10769719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	951	Open in IMG/M
3300027616\|Ga0209106_1150844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	518	Open in IMG/M
3300027767\|Ga0209655_10226686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	612	Open in IMG/M
3300027840\|Ga0209683_10499712	Not Available	556	Open in IMG/M
3300027854\|Ga0209517_10630632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	562	Open in IMG/M
3300027866\|Ga0209813_10029979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1596	Open in IMG/M
3300027880\|Ga0209481_10612842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	564	Open in IMG/M
3300028719\|Ga0307301_10233895	Not Available	599	Open in IMG/M
3300028792\|Ga0307504_10255878	Not Available	643	Open in IMG/M
3300029999\|Ga0311339_10905935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	837	Open in IMG/M
3300030399\|Ga0311353_11580988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	529	Open in IMG/M
3300030617\|Ga0311356_10589345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1077	Open in IMG/M
3300030707\|Ga0310038_10396980	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300031184\|Ga0307499_10191219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	624	Open in IMG/M
3300031232\|Ga0302323_103265063	Not Available	517	Open in IMG/M
3300031233\|Ga0302307_10543154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300031525\|Ga0302326_10011540	All Organisms → cellular organisms → Bacteria → Proteobacteria	19007	Open in IMG/M
3300031562\|Ga0310886_10104648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1417	Open in IMG/M
3300031708\|Ga0310686_106226514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	691	Open in IMG/M
3300031740\|Ga0307468_100055333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2104	Open in IMG/M
3300031820\|Ga0307473_10547509	Not Available	790	Open in IMG/M
3300031908\|Ga0310900_10943214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	706	Open in IMG/M
3300032012\|Ga0310902_10451149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300032180\|Ga0307471_102813897	Not Available	618	Open in IMG/M
3300032180\|Ga0307471_103531838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	553	Open in IMG/M
3300032770\|Ga0335085_11927073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	602	Open in IMG/M
3300032805\|Ga0335078_11028718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	972	Open in IMG/M
3300032893\|Ga0335069_11611512	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300032955\|Ga0335076_10676105	All Organisms → cellular organisms → Bacteria → Proteobacteria	914	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.37%
Host-Associated	Host-Associated	18.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.59%
Plants	Host-Associated → Plants	18.63%
Aquatic	Environmental → Aquatic	10.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.75%
Freshwater	Environmental → Aquatic → Freshwater	9.80%
Peat	Environmental → Terrestrial → Peat	6.86%
Roots	Host-Associated → Plants → Roots	4.90%
Sediment	Environmental → Aquatic → Sediment	0.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.08%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.86%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.86%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.86%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.90%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.90%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.98%
Compost	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Compost	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.98%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017548	Enriched Organic Plus compost microbial communities from Emeryville, California, USA - eDNA 3rd pass 30_C Kraft OP (version 2)	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062385_101901871	3300004080	Bog Forest Soil	MPDINNRLGGPNLIVTAKTAHKVHFLDAETLTMSKTIDMPGSTHELSLSPDGRTA
Ga0063454_1011822291	3300004081	Soil	MHDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLAATIDMPGSTHELALSSDGRLAYG
Ga0062389_1040187251	3300004092	Bog Forest Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAETFTMSKTIDMPGSTHELAFSPDGRTA
Ga0066398_100915101	3300004268	Tropical Forest Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELALSLDGRTAYGTVYGDGVFAKRVNPD
Ga0066388_1024396942	3300005332	Tropical Forest Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELALSLDGRTAYGTVYGDGVFAKRVNPDRRIAVIDLASKSLVRI
Ga0066388_1026222902	3300005332	Tropical Forest Soil	MHDLNNRPAGPKLIVTAKTAHKVHFVEAASLAVTATLDMPGSTHELALAPDGRIVYGTVYGDGVFARRVNPDRRIVVIDLV
Ga0066388_1052147102	3300005332	Tropical Forest Soil	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLAATIDMPGSTHELALSPDGHTAYGSVYGDGVFAKRVNPDRRI
Ga0070687_1013434771	3300005343	Switchgrass Rhizosphere	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELALSPDGRLAYGTVYGDGVFAKRVNPDRRIVVIDLASRSLRRI
Ga0070674_1020196991	3300005356	Miscanthus Rhizosphere	VTDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSADGRTAYGTVYGDG
Ga0070663_1010754722	3300005455	Corn Rhizosphere	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELALSPDGRLAYGTVYG
Ga0070681_111963702	3300005458	Corn Rhizosphere	VTDLNNRPGGPNLIVTAKTAHKVHFVDAATLETTATIDMPGSTHELALSADGRTAYGSVYGDGVFARRVNPDRRIAVIDVPSKSLTRV
Ga0070763_107216501	3300005610	Soil	MLDVNNRPGGPNLIVTAKTAHKVHFLDAQTLTLSKTIDMPASTHELALSSDGRTAYGTVYGDGIFAKNVNPD
Ga0066903_1043066061	3300005764	Tropical Forest Soil	MFDLNNRPGGPNLIVTAKTAHKVHFFDAATLTMTATLDMPGSTHELALSPDGRTAYGSVYGDGIFIKRVNP
Ga0074472_101695871	3300005833	Sediment (Intertidal)	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTIAATIDMPGSTHELTLSPDGRTAYGSVYGDG
Ga0075417_102528802	3300006049	Populus Rhizosphere	MIDLNNRAGGPNLIVTAKTAHKVHFLDAATLTMGATIDMPGSTHELALAPDGRTAYGTVYGGGVF
Ga0075362_101568461	3300006177	Populus Endosphere	VLDLNNRPGGPHLIVTAKTAHKVHFLDAATLTMDTTIDMPGSTHELAISPDNKTAYGTVYGDGIFAKRVNPD
Ga0075367_100859901	3300006178	Populus Endosphere	VLDLNNRPGGPHLIVTAKTAHKVHFLDAATLTMDTTIDMPGSTHELAISPDNKTAYGTVY
Ga0075366_106708552	3300006195	Populus Endosphere	LLDLNNRPGGPHLIVTAKTAHKVHFLDAATLTMDTTIDMPGSTHELAISPDNKTAYGTVYGDGIFA
Ga0075370_110114432	3300006353	Populus Endosphere	VLDLNNRPGGPHLIVTAKTAHKVHFLDAATLTMDTTIDMPGSTHELAISPDNKTAY
Ga0075428_1008229252	3300006844	Populus Rhizosphere	MDINNRPGGPNLIVTAKTAHKVHFLDAATLTLASTIDMPGSTHELALSLDGQTAYGS
Ga0075428_1022249201	3300006844	Populus Rhizosphere	MLDLNNRLGGPNLIVTAKTAHKVHFLDAATLTISATLQMPGSTHEMALSADGRTIYATIY
Ga0075421_1014341002	3300006845	Populus Rhizosphere	MDINNRPGGPNLIVTAKTAHKVHFLDAATLTLASTIDMPGSTHELALSLDGQTAYG
Ga0075425_1005886001	3300006854	Populus Rhizosphere	MDINNRPGGPNLIVTAKTAHKVHFLDAATLTLASTIDMPGSTHELALSLDGQTAYGSVYGDG
Ga0099791_105167951	3300007255	Vadose Zone Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLAATIDMPGSTHELALSPDGRLAYGTVYGDGVF
Ga0114129_122286662	3300009147	Populus Rhizosphere	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSADGRTAYGTVY
Ga0114129_133471781	3300009147	Populus Rhizosphere	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLTSTIDMPGSTHELALSLDERTAYGSVYGDGVFAKRVNPDRR
Ga0111538_114505351	3300009156	Populus Rhizosphere	LLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMSATIDMPGSTHEIALSPDGR
Ga0111538_134514342	3300009156	Populus Rhizosphere	VTDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSADGRIAYG
Ga0116102_10555191	3300009632	Peatland	MTMLDLNNRPGGPNLIVTAKTAHKVHFFDAETLALSKTIDMPGSTHELALSADGRTAYGSVYGDGIFTRRMN
Ga0116223_105602181	3300009839	Peatlands Soil	MIDLNNRPGGPNLIVTAKTAHKVHFLDAETLTLAKTIDMPGSTHELALSADGRTAYGSVYGDGI
Ga0126305_106698641	3300010036	Serpentine Soil	MFDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMTGTLDMPGSTHELALSPDGRTAYGTVY
Ga0126312_103263441	3300010041	Serpentine Soil	MFDLNNRPGGPNLIVTAKTAHKVHFLDAATLAMTATIDMPGSTHEMAMTADGRTIYATIYGDG
Ga0126380_113576262	3300010043	Tropical Forest Soil	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSADGRTAYGTVYGDGVFAKRV
Ga0126380_114056491	3300010043	Tropical Forest Soil	MNAMTPDPNNRPGGPHLIVTAKTAHKVHFLDAATLEMTATIDMPGSTHEIALSLDGRTAYASVY
Ga0126384_122220842	3300010046	Tropical Forest Soil	MHDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLAATIDMPGSTHELALSPDGRTAYGSVYGDGVFAKRINP
Ga0099796_104928861	3300010159	Vadose Zone Soil	MIDPNNRLGGPNLIVTAKTAHKVHFLDAATLAMTATIDMPGSTHEIALSLDGRTAYASVYGDGVFAKRVNPDR
Ga0126370_111158282	3300010358	Tropical Forest Soil	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELTLSPDGRLAYGS
Ga0126372_111762721	3300010360	Tropical Forest Soil	MLDLNMLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLASTIDMPGSTHELALSPDGRTAYGSVYGDGVFAKRVNPDRRIVVIDLASRSLQRIID
Ga0126378_127461981	3300010361	Tropical Forest Soil	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMASTIDMPGSTHELTLSPDGRTAYGSVY
Ga0126377_126874411	3300010362	Tropical Forest Soil	MHDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMASTIDMPGSTHELALSPDGRTAYGSVYGDGVFAKR
Ga0126379_101989293	3300010366	Tropical Forest Soil	MVDPNNRPGGPNLIVTAKSANKVHFFDAASLAMTADLDMPGSTHELATSADGRTIYASI
Ga0126379_115493782	3300010366	Tropical Forest Soil	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLAATIDMPGSTHELALSPDGHTAYGSVYGDGVFAKRVNP
Ga0126379_118150572	3300010366	Tropical Forest Soil	MNAMTPDPNNRPGGPHIILTAKTAHKVHFLDAATLEMTATIDMPGSTHEIALSLDGR
Ga0134125_129743541	3300010371	Terrestrial Soil	MIDLNNRPGGPNLIVTAKTAHKVHFFDASTLAMTATLDMPGSTHELAISADGRTAYGSVYGDGVFARRINPDRRIV
Ga0134122_104917101	3300010400	Terrestrial Soil	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLAMQATLDMPGSTHEMVMTPDSRTI
Ga0137399_109397701	3300012203	Vadose Zone Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTTSTTIDMPGSTHELTLSPDGRTAYGSVYGDGVFAKRVNPD
Ga0137380_115967281	3300012206	Vadose Zone Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELALSPDGRTAYGSV*
Ga0137384_112543961	3300012357	Vadose Zone Soil	MHDINNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELALSPDGRLAYGTVYGDGVFAKRVNPDRRIVVI
Ga0137368_101019834	3300012358	Vadose Zone Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMSATIDMPGSTHELALSADGRTAYGSVYGDGVFA
Ga0137407_110078861	3300012930	Vadose Zone Soil	VLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLAATIDMPGSTHELALSPDGRLAYGTVYGDGVFAKRVNPD
Ga0126375_100349394	3300012948	Tropical Forest Soil	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELALSPDGRTAYGSVYGDGVFAKRVNPD
Ga0126375_107140332	3300012948	Tropical Forest Soil	MTDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLASTIDMPGSTHELALSPDGRTAYGSVYGDGVFAKR
Ga0181517_105371821	3300014160	Bog	MTVFDVNNRPGGPNLIVTAKTAHKVHFLDAETLTVSTTIDTPGSTHELALSADGRTAYGTVYGDGIFTKRINPDRRIVVI
Ga0137412_112181791	3300015242	Vadose Zone Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTTSTTIDMPGSTHELTLSPDGRTASSSSSPAAA*
Ga0182743_10209372	3300017548	Compost	MPDLNNRPGGPNLIVTAKSAHKVQFLDAATLTINTTIDMPGSTHELALSADGRTAYGSVYGDG
Ga0187817_107699011	3300017955	Freshwater Sediment	MLDLNNRPGGPNLIVTAKTAHKVHFLDAETLTVSKTIDMPGSTHELAFSPDGRTAY
Ga0187781_106455201	3300017972	Tropical Peatland	MIDLNNRPGGPHLIVTAKTAHKVHFLDAATLTLSKTIDMPGSTHELALSADGRTAYGTVY
Ga0187781_113087752	3300017972	Tropical Peatland	MLDINNRPGGPNLIVTAKTAHKVHFLDAETLTLSKTIDMPGSTHELALSPDGRSAYGSVYGDG
Ga0187781_114694261	3300017972	Tropical Peatland	MLDVNNRPGGPNLIVTAKTAHKVHFLDAETLTLSKTIDMPGSTHELALSADGCTAYGSVYGDGIFIKRINPDRR
Ga0187871_103865551	3300018042	Peatland	MFDLNNRPGGPNLIVTAKTAHKMHFLDANTLTVSKTIDMPGSTHEIALSPDGRTAYGSVYGDGIFIKR
Ga0187769_110480201	3300018086	Tropical Peatland	MFDLNNRPGGPNLIVTAKTAHKVHFLDAETLTLSKTIDMPGSTHELALSPDGRTAFGSVYGDGIFIKRVNPDRRVVVIDLPTQSLT
Ga0190272_110906631	3300018429	Soil	MIDPNNRPGGPNLIVTAKTAHKVHFLDAATLAMTATIDMPGSTHEIALSLDGRTAYASVYGDGIFAKRVNPDRRI
Ga0190272_118120661	3300018429	Soil	VTDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSADGRTAYGTVYGDGVFAKRVNPDRRIVVIDLPSKS
Ga0190269_106293921	3300018465	Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTISATIDMPGSTHELALSADGRTAYASVYGDGVFAKRVNPDR
Ga0190269_115529541	3300018465	Soil	VTDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSADGRTAYGTVYGDGVFAKRVN
Ga0190268_118082881	3300018466	Soil	VSDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSPDGRTAYGTVYGDGVFAKRVNPDRRIVVIDL
Ga0190273_109724412	3300018920	Soil	VTDLNNRPGGPNLIVTAKTAHKVHFVDAATLATTATIDMPGSTHELALSADGRTAYG
Ga0179594_103059272	3300020170	Vadose Zone Soil	MHDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMASSIDMPGSTHELALSPDGRLAYGSVYGDGVFAKRVNPDRRIVVIDLPSRLLK
Ga0210379_101511002	3300021081	Groundwater Sediment	MTDPNNRPGGPNLIVTAKTAHKVHFVDAATLATTATIDMPGSTHEIALSPDGRTAYGSVYGDGIFVKRV
Ga0224551_10757182	3300023259	Soil	VLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLSKTIDMPGSTHELALSSDGRTAYGTVYGDGIFIKRVNPDRRIVV
Ga0224564_11284822	3300024271	Soil	MLDVNNRPGGPNLIVTAKTAHKVHFLDAQTLTLSKTIDMPASTHELALSSDGRTAYGTVYGDGIF
Ga0208455_11015432	3300025453	Peatland	MTMLDLNNRPGGPNLIVTAKTAHKVHFFDAETLALSKTIDMPGSTHELALSADGRTAYG
Ga0207678_111210501	3300026067	Corn Rhizosphere	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELALSPDGRLAYGTVYGDGVFA
Ga0207702_107697193	3300026078	Corn Rhizosphere	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMAATIDMPGSTHELALSPDGRLAYGTVYGDGVFAKRVNPDRRIVVIDLASRSLRRTSIRIQTS
Ga0209106_11508441	3300027616	Forest Soil	MIDPNNRLGGPNLIVTAKTAHKVHFLDAATLTLASTINMPGSTHELALSPDGRTAYGSVYGDGVFAKRVNPDRRIVVID
Ga0209655_102266861	3300027767	Bog Forest Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAETLTLAKTIDMPGSTHELALSADGRTAYGTVYGDGIFTKRINPDRRIVVIDLPSQTLSRVIDL
Ga0209683_104997122	3300027840	Wetland Sediment	MIDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMSATIDMPGSTHELTLSPDGRTAYGTVYGD
Ga0209517_106306321	3300027854	Peatlands Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLDAETLTQAKTIDMPGSTHELALSADGRTAYGSVYGDGIFTKRINPDRRIV
Ga0209813_100299793	3300027866	Populus Endosphere	LLDLNNRPGGPHLIVTAKTAHKVHFLDAATLTMDTTIDMPGSTHELAISPDNKTAYGTVYGDGIFAKRV
Ga0209481_106128421	3300027880	Populus Rhizosphere	VTDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQATIDMPGSTHELALSADGRTAYGSVYGDGVFAKRVNPDRRIVVIDLP
Ga0307301_102338951	3300028719	Soil	MPDLNNRPGGPNLIVTAKTAHKVHFLGAATLTLAATIDLPGSTHELALSPDGRLAYGTVYGDGVFAKRVNPDRRI
Ga0307504_102558781	3300028792	Soil	MLDLNNRPGGPNLIVTAKTAHKVHFLNAATMEMTSTIDMPGSTHEITLSLDGRTAYASVYGDGVFAKRVNPDRRLV
Ga0311339_109059351	3300029999	Palsa	MQDINNRPGGPNLIVTAKTAHKVHFLDVDSFAVSRTIDMPGSTHELALSPDGRTAYGTVYGDGIFAKNVNPD
Ga0311353_115809882	3300030399	Palsa	MQDINNRPGGPNLIVTAKTAHKVHFLDVDSFAVSRTIDMPGSTHELALSPDGRTAYGTVYGDGIFAKNVNPDRRVVAIDLPSQTLTRVIDLGETC
Ga0311356_105893452	3300030617	Palsa	MLDLNNRPGGPNLIVTAKTAHKVHFLDVDSLAVSRTIDMPGSTHELALSHDGRTAYGTVYGDGIFAKNVNPDRRIVVIDFPSQT
Ga0310038_103969802	3300030707	Peatlands Soil	MIDLNNRPGGPNLIVTAKTAHKVHFLDAETLTLAKTIDMPGSTHELALSADGRTA
Ga0307499_101912191	3300031184	Soil	MDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMASTIDMPGSTHELALSPDGRLAYGTVYGDGVFAKRVNPDRRIVVIDLASR
Ga0302323_1032650632	3300031232	Fen	MTDLNNRYGGPNLIVTAKTAHKVHFVDAATLATTATIDMPGSTHEIALSPDGCTAYASVY
Ga0302307_105431542	3300031233	Palsa	MLDLNNRPGGPNLIVTAKTAHKVHFLDAETLTLAETIDMPGSTHELALSADGRTAYGTVYGDG
Ga0302326_1001154018	3300031525	Palsa	VLDLNNRPGGPNLIVTAKTAHKVHFLDAATLTLSKTIDMPGSTHELALSSDGRTAYGT
Ga0310886_101046481	3300031562	Soil	VTDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSADGRTAYGTVYGDGVFAKR
Ga0310686_1062265141	3300031708	Soil	MFDLNNRLGGPNLIVTAKTAHKVHFLDAGTLTVSKTIDMPGSTHELALSPDGRTAYGSVYGDGI
Ga0307468_1000553331	3300031740	Hardwood Forest Soil	MHDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMASTIDMPGSTHELALSPDGRTAYGSVYGDGVFAK
Ga0307473_105475092	3300031820	Hardwood Forest Soil	MIDPNNRPGGPNLIVTAKTAHKVHFLDAATLAMTATIDMPGSTHEIALSLDGRTAYASVYGDGIFAKRVNPDRR
Ga0310900_109432141	3300031908	Soil	VTDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSADGRTAYGTVYGDGVFAKRVNPDRRIV
Ga0310902_104511493	3300032012	Soil	VTDLNNRPGGPNLIVTAKTAHKVHFLDAATLTMQSTIDMPGSTHELALSADGRTAYGT
Ga0307471_1028138971	3300032180	Hardwood Forest Soil	MIDPNNRPGGPNLVVTAKTAHKVHFLDAATLAMTATIDMPGSTHEIALSLDGRTAYASVYGDGVFAKRVNPDRRI
Ga0307471_1035318381	3300032180	Hardwood Forest Soil	MFDLNNRPGGPNLIVTAKTAHKVHFFDAATLAMTATLDMPGSTHELALSPDGRTAYGTVYGDGIFIKRVNPDRRI
Ga0335085_119270732	3300032770	Soil	MLDVNNRLGGPNLILTAKTAHKVHFLDAETLTVAKTIDMPGSTHELALSADGRTAYGSVYGDGIFVKRVNPDRRIVVID
Ga0335078_110287182	3300032805	Soil	MLDINNRPGGPNLIVTAKTAHKVHFLDAATLSLTKSIDMPGSTHELALSADGRTAYGSVYGDGIFIKRINPDRRVVV
Ga0335069_116115121	3300032893	Soil	MILFAEPAETPLPDINNRPGGPNLIVTAKTAHKVHFLDAATLHTSVTLDMPGSTHEIALSADGRTAYASVYGDGIFGKNVNPDRRI
Ga0335076_106761052	3300032955	Soil	MPDINNRPGGPNLIVTAKTAHKVHFLDAGTLALAKTIDMPGSTHELALSPDGRTAYGTVYGDGIFAKNVNPDRRIVVI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101520

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences