3300017280: Metatranscriptome of coastal eukaryotic communities from Ligurian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 638 ?mol photons light - Strombidium inclinatum S3 (MMETSP0208)

Overview

Basic Information

• IMG/M Taxon OID: 3300017280
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212396 | Ga0186684
• Sample Name: Metatranscriptome of coastal eukaryotic communities from Ligurian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 638 ?mol photons light - Strombidium inclinatum S3 (MMETSP0208)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39373457
• Sequencing Scaffolds: 29
• Novel Protein Genes: 33
• Associated Families: 29

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	9
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	5
Not Available	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	6
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Ligurian Sea
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): 10.2
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000088	Metagenome / Metatranscriptome	2436	Y
F000787	Metagenome / Metatranscriptome	891	Y
F000820	Metagenome / Metatranscriptome	878	Y
F000935	Metagenome / Metatranscriptome	828	Y
F000991	Metagenome / Metatranscriptome	811	Y
F002832	Metagenome / Metatranscriptome	527	Y
F002870	Metagenome / Metatranscriptome	524	Y
F005609	Metagenome / Metatranscriptome	395	Y
F006114	Metagenome / Metatranscriptome	381	Y
F009292	Metagenome / Metatranscriptome	320	Y
F010838	Metagenome / Metatranscriptome	298	Y
F011523	Metagenome / Metatranscriptome	290	Y
F012918	Metagenome / Metatranscriptome	276	Y
F015263	Metagenome / Metatranscriptome	256	Y
F024569	Metagenome / Metatranscriptome	205	Y
F030777	Metagenome / Metatranscriptome	184	Y
F051966	Metagenome / Metatranscriptome	143	Y
F054596	Metagenome / Metatranscriptome	139	Y
F056633	Metagenome / Metatranscriptome	137	Y
F057417	Metagenome / Metatranscriptome	136	Y
F060335	Metagenome / Metatranscriptome	133	Y
F062157	Metagenome / Metatranscriptome	131	Y
F071293	Metagenome / Metatranscriptome	122	Y
F076114	Metagenome / Metatranscriptome	118	Y
F079715	Metagenome / Metatranscriptome	115	Y
F082766	Metagenome / Metatranscriptome	113	Y
F103887	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186684_100002	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	18635
Ga0186684_100104	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	8752
Ga0186684_102518	All Organisms → Viruses → Predicted Viral	3172
Ga0186684_103119	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	2847
Ga0186684_106287	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1830
Ga0186684_110086	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1270
Ga0186684_112724	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1007
Ga0186684_113240	Not Available	962
Ga0186684_113344	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	953
Ga0186684_114201	Not Available	877
Ga0186684_114794	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	830
Ga0186684_114850	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	826
Ga0186684_115758	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	760
Ga0186684_116213	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	729
Ga0186684_116226	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	728
Ga0186684_116329	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	721
Ga0186684_116346	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	720
Ga0186684_116562	Not Available	706
Ga0186684_117196	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	669
Ga0186684_117620	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	647
Ga0186684_118162	Not Available	618
Ga0186684_118260	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	612
Ga0186684_118370	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	606
Ga0186684_118498	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	599
Ga0186684_118854	Not Available	579
Ga0186684_118924	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	575
Ga0186684_119116	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	564
Ga0186684_119172	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	561
Ga0186684_119600	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	538

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186684_100002	Ga0186684_10000228	F062157	MFPFTEIGAILQNIMYQLVRKNSRYINQLLSEANFGFIFGEQLILEYDFIRHCIDNKIESMVLIDSYVKKNEIRLNTFEYLLRSSEKTLKDQFLSSAFIDKLFEDYISDFREFNIQFSKIDLEFLAFRRSYPIRLECISLVNTALMLKPEAPRVFTELVMYARRHFLIKNELDLLRRGRLSNKESTSLLLFAIFLESNEEDLIHVMMQEGASEVLRQLIRDYPSLGRKFPILSAFISPF
Ga0186684_100104	Ga0186684_10010413	F103887	MDPLGNPILDRDPSGNLIDRDGNRVNSKGYLIDSQGNVINKQGKITFAHELLDNEQDIPKVFRTGLLKSDTASSLSRLMSEIGKNQPSEFDQEEQRIQEEIA
Ga0186684_102518	Ga0186684_1025186	F060335	MDKKHGFYYLRIGTDTEQYDLSLKVKMFLKGDQVQSSEPNEKVYVYKYPEDKGGDVKLTTYCQIRPEQGKKTCDFIVPTTHHDKTFVYLQKKLETVPGKNGITLEAKPAADQEDGALLQ
Ga0186684_103119	Ga0186684_1031191	F060335	MKATKLASDPKADSYFEIHKREYYYMKDAVDKKHGFYYLRIGSNSDKYDLSLKIKMFVKGDLVETTEKAEKLYVFKYPEDKFPGDYKLTTFCNIRPLKGKKTCDFLVPTDYHDRTYVYI
Ga0186684_106287	Ga0186684_1062873	F015263	MNSHPSSKAQSSRPKQHPVFNGKYHIVSSLGEGNTSKVYLVKSIEDPKKQYALKLIRDEFLKRDRDSICSVE
Ga0186684_108033	Ga0186684_1080332	F010838	MDANVTRGNLKNLVTDKPSPITVGLAQKSDSDGLFKLMDANVTRGSLKNLITDKPSPITVALA
Ga0186684_110086	Ga0186684_1100862	F009292	VAQDNFDKHAQNVDVPIDEVKAITLKVAPTYALDQVESVTLKSFRKVVGYDTFNSILKKDRDEKKDIADHYNITVSMMVKRVPEATAAAPLKDPYDGTKTLSQTLDKGFPYDDGDNTIDDMTPTWKNHHVQPITNVGKLNGENVTKEALVNLIKDSDSPITQGLVQLDEQKSDADGLFKLMDANVTRGNLKNLVTDKPSPITVGLAQKSDADGLFKLMDANVTRGNLKNLVTDKPSPITVGLAQKSDADGLFKLMDANVTR
Ga0186684_112724	Ga0186684_1127241	F054596	MALDSMPASQQQSFYGKDDYDKAVYENDFQNWVKIISMLILFYIFQGLHWWANFELGVHDSEMSTFYNLIIFGTAVLVIGLMLFFGAQVNRKKLTHEFFVEKISEETQRLLEEQAKKKHDAKAEAVDGITKA
Ga0186684_113240	Ga0186684_1132401	F056633	MAQKLGVPFTADLMALGSNSAISDALIEKAVAAGKSEEQINAAMASL
Ga0186684_113344	Ga0186684_1133442	F012918	MVNYQVTDYVENNDLVCFGLSSHEVEEWLPGWTPTAQRDLSVLKSWFNKDKPEDYLVRPATPSDYNWTRYATKAQVRCLLGLLVIRELPIKSFYARCWLVYGWLVLFVSKGLGRGLRSQRPLVTYNQRFHARALLNYPDLYWWNLTRVLPRNPPVPDAHREWRTRQNPVFHQYHKGCYRYRQRKPRYVPWDGSQNQPIMPYLHDRGTGVINGTFMRNCNSVPALK
Ga0186684_114201	Ga0186684_1142012	F030777	MDAAAIKAYSSVIADAAEDSEPKVPVAYTVTMQEEKPVHHDEFNPDPMGSMIQNEISSIKDASVKAAKDKDE
Ga0186684_114794	Ga0186684_1147941	F011523	MAQKWRMFKNISRFFKNPWGYTFWKVSTLSSQNRIRIMWGLLLYHLYQSFILYLVTKMKKESMIGKWKWHIGETNAFYDSPHTDRRFPADRKKNYVRYSNFHQVRKNKKISMIHTNWWCRDQNFRKYFDMRKRHNIEPSMSGFYHD
Ga0186684_114850	Ga0186684_1148501	F079715	MQGSTRDANLDEKVKKDERWPNMYGDLNPIPDVTKDMVAGADPRAIK
Ga0186684_114908	Ga0186684_1149082	F000055	LNIIIFKMKYTSLLIVAALFAASSVEQTQAVYLAKKKKKEDPPPTAADTPTSGYFGADEDDVMNNIFNHYAVEVTNAAGQKTGNKVLYKDGAQKACAEVLLVTKQVSEAKMEQYMGEFFPRTWAKFDLNNAGEIDLSESHTFMRSLLGRLNQFVLAPGSLTDIGVE
Ga0186684_115758	Ga0186684_1157581	F082766	LTQANFEKLFQLTTPLSCPTEDPEGNLYVVSANGDVYQMSEGTLEVAFSTGGQPSGMVFDNHNSSFIADLAHQAILC
Ga0186684_116213	Ga0186684_1162131	F002870	MAAEASAVQNKQAASLVSQALSMTESGSQAEVHLENALHALKSDAQILDSHAQTVSVPIDEKRALTLKVSPTYTLDEVQSVTLKSFRKIVGYDTFESIRRKNRSEAKDTSDYYNVTVSMMVRRKPVEAAAAPARDIYAPDGAPSLASTLDKGFPYDD
Ga0186684_116226	Ga0186684_1162261	F071293	FLNRNMVYKIRNKGFDIFAAATNTRVHPAKKTKISMDLTRCITLQVQQTRFTGMRIKHGYRNISRASKQFLMGDKLLEQVCILTLKHHFFRPLYYKSPIENSFYLGRALADLTDRHYALFANNQHPLQLDLYDQYNKFLR
Ga0186684_116329	Ga0186684_1163291	F057417	MYKTSLLALLGFTAAKQHHAKTLYEDEWGHNSGNSYNNGPFTDFYHGKASPYAVTNDDIQLKSDSKYEDEWGHNSGNSYENGPFTHFYHGKASPYSVIKEDVQLKSQYEDEWGHNTGNSYENGPFTHFYHGKASPYSVIKEDVQLKSQYEDEWGHNSGNSYENGPFTHFYHGKASPYSVIKEDVQLKSQYEDEWGHNSGNSYNNGPFTNFYHGKASPYAVTADD
Ga0186684_116346	Ga0186684_1163461	F076114	DKMSGSDEAFLRFYESYARSPIDELQMTPREPGDFRERVPRETIKGRYAVFHNSIETYLYRHWRAFTVPRMAVFALGGYTLTMHGIFMFTHTFPNLTSYKSFAHHPNYKLLGSAWSWFYALRPVFWTYITFRLTRAVYYMSKRHWQGFDDQHGTMYSDTLYPDLFHDSDDQRYINFRYSDQKVVPEPLTGYYPHSFLRYGKWLAKKEETFFKNPNPPEKDSLAPIV
Ga0186684_116562	Ga0186684_1165621	F000088	MKNLSILLLAACLSTQESQAVKLVEGVTFAPPAKGPYASDTDHLSAECYGADEDDILYDVFERYRVEEKNPMGAGTGIWKLPKWSGYQWAGDAIRRFHVMDEDKIDAYLAANFDNFWAKYDNNGTGEIYESEGETFMRALLGPNNRFRLAPGAITDMDSSAQIMQNQFSASPDKQPFKHRYELV
Ga0186684_117196	Ga0186684_1171961	F000820	VTRGNLKNLVTDKPSPITVGLAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPSPITVGLAQKSDADGLFKLMDANVTRGNLKNLVTDKPSPITVGLAQKSDADGLFKLMDANVTRGNLKNLITDKPAPITVSLAQKQGVTGMNGDEEVYGPAVVGGDHVTYSQKK
Ga0186684_117620	Ga0186684_1176201	F024569	KIKMYYNYLNRDQLYLKSYRTHNLWFDQYQKKVRCPRITSFHIGFLKRMGKSYSGCRVVCFMWGLTFFAGVRFLAGFSKTSTSNPKEAEVYFRLNTIFQKNKYGYNTRFMSDFDLLLEGVLNERFIDESTLYYDNPVVTKEIEDMELGLNGEFAEDDIKMMLKDKHHHAAPKMTTKFPARVGTNYPKSDDLSCYKIHPVGSKPDF
Ga0186684_118162	Ga0186684_1181621	F005609	MKFISAAIVALFATESSAMLVNKPSERVSGEEGIYRARPYTYTYNDIRDKELKCVADRNREWHYYANNDTWECPLKAYP
Ga0186684_118260	Ga0186684_1182601	F000991	SIVVALLGFTSALRLNTLDDSDPEGRNVDQTTWKDMHVSGYNGADEDEIMDNIFGKFSTEGRTPSGHKTGQKLLMKDQAKLAGGTLLEALHKVEPADVPAYLDANFENTWNHFDQNHEGWIRYEETHTFQRHLMGKLNQFAGTPGSLGDLASGGKTYPLPYPAGSEAVPVGQV
Ga0186684_118268	Ga0186684_1182681	F000075	LTFAVGLLLVSGASAAQEDYLLTELAQNLQQAQASEARGDKDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTL
Ga0186684_118370	Ga0186684_1183701	F000787	QLIIIIKFIMKFTVFAALVAATQAGHPPAVGLGHAIVPATREDYDNAKELWKNDWAKYRAAHPHDQDCSISESDNWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTPLPDQAPGLAADN
Ga0186684_118498	Ga0186684_1184981	F000991	NIIKMKFLRIMALVALLGAQDSTAIRLRDDSDPEGRNVDQTTWKDMHVSGYNGADEDEIMDNIFGKFSDEGRTPSGHKTGQKLLMKDQAKLAAGTLLEALHKVEPADVPAFLDANFESTWNHFDQNHEGWIRYEETHTFQRHLMGKLNQFAGSPGSLGDLASGGHHYPLPYPAGSENVTVGSV
Ga0186684_118854	Ga0186684_1188541	F002832	HGIKIITKMKFSIVAALVAVVTASSVQQRGTYTYEDVREQELKCKADRNREWKYDAATNTWSCPLQRYD
Ga0186684_118924	Ga0186684_1189242	F006114	MTAQQSLKRISSAFTSRPKEDKVKELAQKLGIPMTPELMQLGGNEAISNALVEIAVGMGKSQEEIEAALGE
Ga0186684_119047	Ga0186684_1190471	F000055	MKFSSLLALVALVAVVDNAAAIDLSKKKKKEDPPPTAADTPTSGYFGADEDDVMNNIFSHYAVQVTNAAGQKTGQKVLYKDGAQKACAEILLVTKQVSEAKMEQYMGEFFPRTWAKFDLNNSGEIDVTESHTFMRALLGRLNQFVLAPGSLTDIKVE
Ga0186684_119116	Ga0186684_1191161	F000991	IMKATVMLALLGFTSAMRLSALDNSDPEGRNVDQNTWKDMHVSGYNGADEDEIMDNIFGKFSTEGRTPSGHKTGQKLLVKDQAKVAAGTLLEALHKVDPSDVPNFLDANFEPTWNHFDQNHEGWIRYEETHTFQRHLMGKLNQFAGSPGSLGDLASGGKHYPLPYPANSEGVPVGQV
Ga0186684_119172	Ga0186684_1191721	F000935	MKYTALFVLGALATSQALVSDNQDKLYNLMQLQTSECPEPLEITEDELHYQLGEFSRNFQMEHWNNAMKIKDELEKKGAHTRFAVTTKELYDKSFSFPKVRNYDYAVEQMNELEHYEDNLNNNISNNLHLKKFIEIAKKVRANLNDKYDIGFIDPGVEGDWQ
Ga0186684_119600	Ga0186684_1196001	F051966	MGVKFYRGGDKPKKIRKRFSQTKSWFRTLKWVAYHAHPLMIAGHPFKGGNQFFSTGYLEHPDMKRFQIADYSLFVPPRPSAWISGFAATAAATQVPSFNDFFATYFAGRSFNVTEPKCTTMLENMKRCWENHSEDPVDSCQYYISGFERLACGAK