3300017262: Metatranscriptome of marine eukaryotic communities from Tyrrhenian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 291 ?mol photons light - Pseudokeronopsis sp. OXSARD2 (MMETSP0211)

Overview

Basic Information

• IMG/M Taxon OID: 3300017262
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0211932 | Ga0186220
• Sample Name: Metatranscriptome of marine eukaryotic communities from Tyrrhenian Sea in autoclaved artificial seawater, 19 C, 33 psu salinity and 291 ?mol photons light - Pseudokeronopsis sp. OXSARD2 (MMETSP0211)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31610624
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	7
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae → Stylonychinae → Stylonychia → Stylonychia lemnae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine tidal flow zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Tyrrhenian Sea
• Coordinates
  • Lat. (^o): 38.54
  • Long. (^o): 8.46
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009809	Metagenome / Metatranscriptome	312	Y
F011523	Metagenome / Metatranscriptome	290	Y
F022421	Metagenome / Metatranscriptome	214	Y
F034341	Metagenome / Metatranscriptome	175	Y
F039667	Metagenome / Metatranscriptome	163	Y
F040117	Metagenome / Metatranscriptome	162	Y
F044532	Metagenome / Metatranscriptome	154	Y
F052624	Metagenome / Metatranscriptome	142	Y
F062157	Metagenome / Metatranscriptome	131	Y
F077340	Metagenome / Metatranscriptome	117	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186220_100002	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	18533
Ga0186220_104373	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1827
Ga0186220_108485	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1244
Ga0186220_110840	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1020
Ga0186220_111569	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	961
Ga0186220_113866	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	793
Ga0186220_114055	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	779
Ga0186220_114655	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	738
Ga0186220_116395	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	636
Ga0186220_117069	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae → Stylonychinae → Stylonychia → Stylonychia lemnae	599

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186220_100002	Ga0186220_1000021	F062157	LILEYDFITHCIDSKIESMVLIDSYVKKNEIRLNTFEYLLKNNEHTLKHQFVKSNFMEKMFSDYIQDFREFNIQFSKIDLEFLAFRKTFPIRLESISILNTTLLEKERAPAVFTELIMYARRHFLIRNEVAMLRLGKLSNKESTSLLLFSIILESNQEDLIYAMMQEGVHKTIKDMMKEYPSLNKRYPILAQFINKY
Ga0186220_104373	Ga0186220_1043733	F034341	MDIYSDDMTFNTFYEQKKKDLKILSALNEFVKPNPYFIYYMFKDTIHVDDYGSIKETHFKFPSMNKS
Ga0186220_108485	Ga0186220_1084851	F022421	VFYLSQKFYRWLRWQDGTHLMLADKSEAGWYFVPDRGYDLVTNTISGEYTPEHVHHNYLYTDAYEKSRQARGKEGASHGQFLPSGQFSPKDKWF
Ga0186220_110840	Ga0186220_1108401	F039667	MAFYGVGLDVKVRELNLQFKLTIQQKGGVGLRSLARIFKRMDFNGNKKLDA
Ga0186220_111569	Ga0186220_1115692	F044532	NNFYSSNFPEYMWQKPHYDLGNKMIHSDLYKKLNPIRGRYDYKPNDYSQMPYFLGHVPQFTWIYGNLDYSFNKYHRHY
Ga0186220_113866	Ga0186220_1138661	F011523	NMTEYLYDRDNPKSHFRQRISGIQGLFYGVPNINERADMIARSLARDTDGDFTKFVTTTGKPRDNAQRWRAFKNIARFYKNPFGYTYWKMQPLHTENRVRVIWALLFYHLYQSFLLYILIKDKKEGMIAKWRYVLGESNKVYDAPHKDRRFPVDRKKNYVRYSNFHQVRRNKRISMMWTNWWCRDQNFRKYFEMRKKNGIRPSYTGFYHEKIYKETA
Ga0186220_114055	Ga0186220_1140552	F009809	LEKIDDCDEETFRDAKSIIELLKENLSLWKEDEEDNKGEDN
Ga0186220_114655	Ga0186220_1146551	F009809	MNKIDDVDEETFRDAKSIIELLKENLTLWKEEEENQNADDQ
Ga0186220_116395	Ga0186220_1163951	F052624	MIYANYITKEMYVFDKEGEWHDEGIYHDALSLDKTFSEKNWYDEFSPSHFXPFQLLFKS
Ga0186220_117069	Ga0186220_1170691	F077340	MVFHITNYMRETNVWMIRKGRWLLWGMVLSIPIYRNVYWDFLGRRVALKQWLYGGSEEEQRKRAEA
Ga0186220_118373	Ga0186220_1183731	F040117	MPQLFFLVVSYLLTPAYRRLDERYHLRFADGEGDDIDEVETFVTYHQRKKPLTRKKYSDAVKLIYKGEEEYDYIPEQPIRYR