3300017107: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/20 medium, no silicate, 19 C, 30 psu salinity and 446 ?mol photons light - Strombidinopsis sp. SopsisLIS2011 (MMETSP0463)

Overview

Basic Information

• IMG/M Taxon OID: 3300017107
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212236 | Ga0186524
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/20 medium, no silicate, 19 C, 30 psu salinity and 446 ?mol photons light - Strombidinopsis sp. SopsisLIS2011 (MMETSP0463)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 29353244
• Sequencing Scaffolds: 20
• Novel Protein Genes: 23
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	5
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	2
All Organisms → cellular organisms → Eukaryota → Cryptophyceae	7
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → estuary → estuarine water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.0
  • Long. (^o): -72.0
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010032	Metagenome / Metatranscriptome	309	N
F011850	Metagenome / Metatranscriptome	286	Y
F015657	Metagenome / Metatranscriptome	253	Y
F018935	Metagenome / Metatranscriptome	232	Y
F021400	Metagenome / Metatranscriptome	219	Y
F026284	Metagenome / Metatranscriptome	198	Y
F026581	Metagenome / Metatranscriptome	197	Y
F032673	Metagenome / Metatranscriptome	179	Y
F033446	Metagenome / Metatranscriptome	177	Y
F039667	Metagenome / Metatranscriptome	163	Y
F045792	Metagenome / Metatranscriptome	152	Y
F062794	Metagenome / Metatranscriptome	130	Y
F068122	Metagenome / Metatranscriptome	125	N
F080515	Metagenome / Metatranscriptome	115	Y
F084315	Metagenome / Metatranscriptome	112	N
F085743	Metagenome / Metatranscriptome	111	Y
F095569	Metagenome / Metatranscriptome	105	Y
F096054	Metagenome / Metatranscriptome	105	Y
F099392	Metagenome / Metatranscriptome	103	Y
F101267	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186524_100002	All Organisms → cellular organisms → Eukaryota	13802
Ga0186524_101717	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	2456
Ga0186524_103282	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1937
Ga0186524_105314	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1582
Ga0186524_105690	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1537
Ga0186524_107790	All Organisms → cellular organisms → Eukaryota	1269
Ga0186524_108597	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1185
Ga0186524_108764	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	1170
Ga0186524_109221	All Organisms → cellular organisms → Eukaryota	1127
Ga0186524_110817	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	986
Ga0186524_111450	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Bacillariales → Bacillariaceae → Pseudo-nitzschia → Pseudo-nitzschia australis	939
Ga0186524_111989	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	896
Ga0186524_112136	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	885
Ga0186524_113589	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	780
Ga0186524_113679	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	775
Ga0186524_113875	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	763
Ga0186524_115285	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	676
Ga0186524_116271	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	620
Ga0186524_117635	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	540
Ga0186524_118394	All Organisms → cellular organisms → Eukaryota → Cryptophyceae	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186524_100002	Ga0186524_10000221	F085743	MNVMTHLRDVSIIKDKTLERINPMKETIMLLKKHQVSQMKADDDYLVILENCKTSLNDVSERALGHVKETILPQ
Ga0186524_101717	Ga0186524_1017174	F021400	LTQYPIQNSRMESTTLFPQKPARASNAQGKELKLYSNYFSVDFDNADIAGVNKYTVKFEPEIPDNSRALRKEVLKKCRDKIKESLDFFIDWGLCAFSLKKVADLPKYEAEHDGVKYTVTIEWVQLMEKTDKDHMNFLKIFFNSMMRSLRFETIGQKSFNSAKAHSLAAHNIKVWPGFDTRLIMKEHGVLLNIDVAFKVVRTDTCLSYMN
Ga0186524_103282	Ga0186524_1032822	F068122	MIEEVNILENETTASEELYSKLELKVRKKFNEEIDHLEKSFRRIMEQLEI
Ga0186524_104184	Ga0186524_1041841	F095569	MILRIDDIVSGIKKNRNDGGRKAKDSDDEGAGEDDTFGDARDG
Ga0186524_105314	Ga0186524_1053143	F099392	MELHKDAVKSLVYPPKEDKRDFGDLDEEKSTREEDILASLLEDLGMDGEDF
Ga0186524_105690	Ga0186524_1056902	F080515	LTGFGAKLDLDIVAVDGKPVDFKKNPFETIYFENTNPTSESMRTVTLKNSSAIQVAFHWSIFRNRNTNTITLTDEQTHYRVTPNNGKIAAGET
Ga0186524_107790	Ga0186524_1077901	F015657	RNYYSKMFSEGQEILDRRYRVIKKLGGGAFGEIYKVEKKKTGEFLAAKVEKAVKM
Ga0186524_108338	Ga0186524_1083381	F096054	MDLTPYEDDTDETLHWKFVAAKQERKKAEADLKLLCNRISLLKQEESKVLIIEQL
Ga0186524_108597	Ga0186524_1085971	F026284	MSEAVSRIPFDKGTYPRTWMQTQQDQDSYDDLQRRKVNPQTPEYVQDGHLICFGLSQQELKEQLPSITKDAQRDIEILRSWFPERKMEEVTRPVFRSDFNFTNYSTRAQLRCALGLAVIRELPVKNFYVRCWIAYFYICWFVIRGLGRGFSYNRPIVLYNHGIHMKALANYPDLFYWNLTRVLPKNPPVPDAHREWQTRQNPVFHLPHKNVYRYRFRKPRYVQWDGSMNQPVLPFMHDHGTEVANGTFKRNCNTSPQLK
Ga0186524_108764	Ga0186524_1087641	F084315	KAMAIQYGTVPADPAAKPSRRPAMLYGAVATAALAVLVVVACLGFMTPKQDAPAELLTQDLVLFKMEPPPEPWSPPANLWMYWGGSPNKRFGHSGDNLRHLVKLGRLAGGEYRDPHFLFTYEAQTFRDLSEACCTTMLVAPMKNNMPIWNAQSNVAQRLRNYVANGNHMIFTGGSLVSMEFINRYFYYNMEPIDAQGIFKGSGYGNWSPGPFRKLIDDDLPWQYKLTPDTLYQDHISVTSMGLRSLPSGTTVLYMTPKSSPVFMIKFCQRISERHGEPPIKTVPRDCWRHAARGYPCSCGTITYIGYDWHMDQTAADWDKVMLAAVEYQQDPDVSETFSPNCKQPPKVVEDPHAPHAPPICK
Ga0186524_109221	Ga0186524_1092211	F039667	MAFYGVNLDVMVRELNLKFKLSIQQKGGVGIRSLKRIFDRMDFNGNKKLDSGEFEQALAAFGLFPKKVEL
Ga0186524_110817	Ga0186524_1108171	F033446	YTSNMPEYYWQKPHWNLGNKLVHNDLYKKLNPVHQRYYYTPNEYSQLPYYFGVVPQGYWLYSNLDYSFNKHHRHIQTHDDWYPDRKNKTLGVDQGGQNQPIMQSSKYMTLVPTRIPRGCYKEIRKYKKCSADKGSKACFNEKIDIMEVCPDHILEGLREKKKWSLRAEVIDNQTYKRAMTVGSYNKGRSVSELKLRTWDEGSLDSLRSDSLYQDDRYDPTKFSHPHRYDNVNFPEQEYKDFFGGTVGTAESEEYERHRIDLFSGTSKAMREHATEKKFSKLKDAAKDVKDLNKQE
Ga0186524_111450	Ga0186524_1114501	F011850	MARTVLVLACSLLLFAPSSHAFAPAGVARVGMPLRGKSVSARSARVTPAKMAMDPSQLSHIADGAQTFLSTLDTVPFIDEVTGEPQGFTSPKNHFASVIGLWVLFALPVWSAAYKQAGCTTPDWFGVSQVAEDAPGVGLLAKAAPEYNGPSFREGLEYVFSFVWKPPILIAWKPRADLDRDAMDPARDTVVSSLYKGLGGALDKTAVYDEEDQLLILSDIVTFEETDLGRRREAIAEASGWYTGNPSFGRSLIEYSEQTRKGKRDQGTVTISTEELAKLRAEAAKK
Ga0186524_111989	Ga0186524_1119891	F010032	EMLSLRALNTISLCLALGLVALAGWHMQNPQHFELFQTSAAKAAPQQTTELSFLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLVWPPLVRYPGISETAKTDLRAYAAAGNNVIFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNCRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYVGYNYNTPFHADQWTRVLHCAIDM
Ga0186524_112136	Ga0186524_1121361	F032673	SVRTMVLLADYGSLSHDIERQPRSRVSAMVAGVAMIAALALVGVVALSWTQDDGSVTLAALNKQEMDDILAKAKHMTTQQLRSEVSQLEVNKLVKAPMQSLVTVNENTAANPDGAVMENVPATVVGPVPGPPDFNGASAVVARLPNIGFAPSLLTEKGFETRGTFTVRKSRAGESFYLRVYGKLNHNIRCTLRGYRNLMGDFTGNTIYTGFKKIYTGKSQLHTSHIPRGIVGEFDIMTCRDLGNGEVQYFRIRYD
Ga0186524_113589	Ga0186524_1135891	F010032	AMLAPRVLNTITVSLALCLVALAGWHVSHPETFELLGAKSAAPQQTTELSFLQTSSFVDQIYMYAGLAVDNKHETGFIAKEIRKHNYQTMVRLFTSLDDATFRAVLWDQAVHCLLWPPLVRYPGISETAKTDLRAYAAAGNNVIFLGNYVAVQFMNDVFGFQLTDDYQNGPYYRNDRNCRNTPFQYLPSRIEQASIETYAVKTRSLPPGGKSMLDTLGATVAFVIRYDLGTVCYVGYNYNTPFHADQWTRVLHCAIDM
Ga0186524_113679	Ga0186524_1136792	F045792	MDNAKIFAEDLIRNRKEALNLRRFGVKMGALSSKLESAYRTQ
Ga0186524_113875	Ga0186524_1138751	F026581	MVAVYNTFGEVEAARPARDGFKKYAGALAGAWAVLFVAAVMIIGTSNNASPTMLAFKEFEPERNVFETFDADFTPEMKFEYDLANEADFAKLNIASGVEGSTVTEGIPDPYAVYHGLTVPEAVYTNPPPYDTSVVEIGEKVFGEPFHEYTAEEEGEAVMGKAYEDTIFDKTLNSVPEPNPSRDWEILDTLNSPLPNY
Ga0186524_114570	Ga0186524_1145701	F045792	MGEAAQKKKVKDALDKGQMDNAKIFAEDLIRNRKEALNLRRFGVKMGALSSKLESAYRTQ
Ga0186524_115285	Ga0186524_1152851	F101267	MGCCSSRAPGSHEWQAQVPGSYKANPIPKVNKQTEVAPDFFMKCYMKGYLRTMPKKQRIWCMIHENNLYFMDSAEDTLPKKFLCFDGCLVNLKGKELEIQTPEIMEGAVPRATYKFVAEGEDVAMEWYENSLKASSRRN
Ga0186524_116271	Ga0186524_1162711	F062794	YKPPLQDPKESSNLEENYMNCLMQKALKDHVLTNKCVLDSILWYHVECPKEVAKFDDPIEFKRKWRDFLGQQKHTYDLLFNKSDEHK
Ga0186524_117635	Ga0186524_1176351	F018935	KMTNNHSYYDYTKQYSSRFLAKYQSHTHWYAGRGSLYLEILRLKAVRMKSNRNWMWFDIRYGTKFLYIFYMPQLFFLTASYLLTPVWRRGDERYHLRFADGEVDDIDENEPFVTYQQRKKPMTRRKYSDSIKLIYNG
Ga0186524_118394	Ga0186524_1183941	F101267	PHHTMGCCSSRPPGAHEWQSQVPGSYKENPIAFVNKKNEVPADFFNKVYMKGYLKTMPKKQRIWCMIHENNFYFMDNAEDTEPRKFFCFDGCLVNLKGKELEIQTAELMGGSVPRATYKFIAEDEAKALEWYENSLKASSRRN