Metagenome / Metatranscriptome Family F045792

Overview

Basic Information

• Family ID: F045792
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 152
• Average Sequence Length: 47 residues
• Representative Sequence: MENAKIFAENVIRNRKEAINLRRFGVKMGALAAKLESAHRTQ
• Number of Associated Samples: 124
• Number of Associated Scaffolds: 152

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Eukaryota
• % of genes with valid RBS motifs: 38.93 %
• % of genes near scaffold ends (potentially truncated): 16.45 %
• % of genes from short scaffolds (< 2000 bps): 86.18 %
• Associated GOLD sequencing projects: 116
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Eukaryota (72.368 % of family members)
• NCBI Taxonomy ID: 2759
• Taxonomy: All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (22.368 % of family members)
• Environment Ontology (ENVO): Unclassified (35.526 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (50.658 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 57.14%
  β-sheet: 0.00%
  Coil/Unstructured: 42.86%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.37 %
Unclassified	root	N/A	27.63 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.37 %
Unclassified	root	N/A	27.63 %

Level 3

Name	Rank	Taxonomy	Distribution
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	72.37 %
Unclassified	root	N/A	27.63 %

Level 4

Name	Rank	Taxonomy	Distribution
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.66 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	71.71 %
Unclassified	root	N/A	27.63 %

Level 5

Name	Rank	Taxonomy	Distribution
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	71.71 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.66 %
Unclassified	root	N/A	27.63 %

Level 6

Name	Rank	Taxonomy	Distribution
Ciliophora	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora	71.71 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.66 %
Unclassified	root	N/A	27.63 %

Level 7

Name	Rank	Taxonomy	Distribution
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.66 %
Intramacronucleata	subphylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata	71.71 %
Unclassified	root	N/A	27.63 %

Level 8

Name	Rank	Taxonomy	Distribution
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.66 %
Spirotrichea	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	71.71 %
Unclassified	root	N/A	27.63 %

Level 9

Name	Rank	Taxonomy	Distribution
Oligotrichia	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia	1.97 %
Spiralia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia	0.66 %
Stichotrichia	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	69.74 %
Unclassified	root	N/A	27.63 %

Level 10

Name	Rank	Taxonomy	Distribution
Lophotrochozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa	0.66 %
Sporadotrichida	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	69.74 %
Strombidiidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae	1.97 %
Unclassified	root	N/A	27.63 %

Level 11

Name	Rank	Taxonomy	Distribution
Mollusca	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca	0.66 %
Oxytrichidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	0.66 %
Strombidium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1.97 %
Unclassified	root	N/A	27.63 %

Level 12

Name	Rank	Taxonomy	Distribution
Gastropoda	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda	0.66 %
Oxytrichidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	0.66 %
Strombidium inclinatum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1.97 %
Unclassified	root	N/A	27.63 %

Level 13

Name	Rank	Taxonomy	Distribution
Oxytrichidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	0.66 %
Patellogastropoda	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda	0.66 %
Strombidium inclinatum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1.97 %
Unclassified	root	N/A	27.63 %

Level 14

Name	Rank	Taxonomy	Distribution
Lottioidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea	0.66 %
Oxytrichidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	0.66 %
Strombidium inclinatum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1.97 %
Unclassified	root	N/A	27.63 %

Level 15

Name	Rank	Taxonomy	Distribution
Lottiidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae	0.66 %
Oxytrichidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	0.66 %
Strombidium inclinatum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1.97 %
Unclassified	root	N/A	27.63 %

Level 16

Name	Rank	Taxonomy	Distribution
Lottia	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia	0.66 %
Oxytrichidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	0.66 %
Strombidium inclinatum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1.97 %
Unclassified	root	N/A	27.63 %

Level 17

Name	Rank	Taxonomy	Distribution
Lottia gigantea	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia → Lottia gigantea	0.66 %
Oxytrichidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	0.66 %
Strombidium inclinatum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1.97 %
Unclassified	root	N/A	27.63 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300013126|Ga0172367_10352981	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	847
(restricted) 3300013131|Ga0172373_10311057	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida → Oxytrichidae	1011
3300002305|B570J29619_1009124	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	763
3300002835|B570J40625_100942957	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Lophotrochozoa → Mollusca → Gastropoda → Patellogastropoda → Lottioidea → Lottiidae → Lottia → Lottia gigantea	743
3300005069|Ga0071350_1109374	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	869
3300005516|Ga0066831_10090670	Not Available	827
3300005516|Ga0066831_10112953	Not Available	737
3300005662|Ga0078894_10436579	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1180
3300005662|Ga0078894_10472709	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	1128
3300005662|Ga0078894_11017207	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Sporadotrichida	712

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	3.29%
Environmental	Environmental	94.08%
Host-Associated	Host-Associated	2.63%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	76.97%
Human	Host-Associated → Human	2.63%
Terrestrial	Environmental → Terrestrial	17.11%
Wastewater	Engineered → Wastewater	3.29%

Category

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.66%
Digestive System	Host-Associated → Human → Digestive System	2.63%
Freshwater	Environmental → Aquatic → Freshwater	27.63%
Marine	Environmental → Aquatic → Marine	47.37%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.97%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	3.29%
Peat	Environmental → Terrestrial → Peat	2.63%
Soil	Environmental → Terrestrial → Soil	13.82%

Type

Habitat	Taxonomy	Distribution
Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline	0.66%
Coastal	Environmental → Aquatic → Marine → Coastal	9.21%
Ice	Environmental → Aquatic → Freshwater → Ice	0.66%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.95%
Lake	Environmental → Aquatic → Freshwater → Lake	12.50%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.63%
Lentic	Environmental → Aquatic → Freshwater → Lentic	10.53%
Oceanic	Environmental → Aquatic → Marine → Oceanic	9.87%
Pond	Environmental → Aquatic → Freshwater → Pond	0.66%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.32%
Sand	Environmental → Terrestrial → Soil → Sand	1.32%
Strait	Environmental → Aquatic → Marine → Strait	0.66%
Unclassified	Environmental → Aquatic → Marine → Unclassified	23.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	11.84%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.29%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified	3.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.63%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.66%

Subtype

Habitat	Taxonomy	Distribution
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.32%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.97%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	3.95%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.84%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.66%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.66%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.66%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment	0.66%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	23.68%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	12.50%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	9.87%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	9.21%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	7.89%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.29%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified	3.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.32%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.66%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.66%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.66%

Habitat

Habitat	Taxonomy	Distribution
Alkaline Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Alkaline → Sediment → Alkaline Sediment	0.66%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	5.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.97%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.66%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	3.95%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.66%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.32%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.29%
Fracking Water	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water	0.66%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.95%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	2.63%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.97%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.66%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.66%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.66%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.66%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	6.58%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.95%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	2.63%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.66%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.66%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.66%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.63%
Ice Edge, Mcmurdo Sound, Antarctica	Environmental → Aquatic → Marine → Oceanic → Unclassified → Ice Edge, Mcmurdo Sound, Antarctica	0.66%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.66%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	22.37%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	6.58%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.66%
Pond Fresh Water	Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water	0.66%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.66%
River Water	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water	0.66%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.66%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.66%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.66%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.55%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.32%
Surface Ocean Water	Environmental → Aquatic → Marine → Oceanic → Unclassified → Surface Ocean Water	2.63%
Wastewater Effluent	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent	3.29%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300002305	Freshwater microbial communities from Lake Mendota, WI - 03OCT2011 deep hole epilimnion	Environmental
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental
3300004112	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)	Environmental
3300005069	Metagenomes from Harmful Algal Blooms in Lake Erie, HABS-E2014-0024	Environmental
3300005516	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B	Environmental
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental
3300005941	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.697	Environmental
3300005987	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 B DNA	Engineered
3300005988	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 9/18/14 C2 DNA	Engineered
3300006355	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_RNA2 (Metagenome Metatranscriptome)	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29619_10091242	3300002305	Freshwater	MENAKVYAENVIRNRKEALGLRRFGVKMGALSAKLESAHRTQQVS*
B570J40625_1009429571	3300002835	Freshwater	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKIESAARTQDISNTIAQSVPLL*
Ga0065166_104071262	3300004112	Freshwater Lake	GNLDNAKIFAETVIRNRKEALNVKRFGVKMGALSAKIESAARTQNISETISKTIPML*
Ga0071350_11093742	3300005069	Freshwater	MENAKIFAENIIRNRKEAINLRRFGVKMGALAAKLESAHRTQEIS*
Ga0066831_100906703	3300005516	Marine	MKKGDTDTARLYAENAIRTKKESLNVRKFGCKMGALSQKIESAYRT*
Ga0066831_101129531	3300005516	Marine	MDNAKVYAETVIRNRKEAINVRRFGVKMAALSSKIEGAARTQQMS*
Ga0078894_104365792	3300005662	Freshwater Lake	MESAKVFAETVIRNRKEALNMKRFGVKMGALAAKLESAYRTQ*
Ga0078894_104727092	3300005662	Freshwater Lake	LDNAKIFAETVIRNRKEALNVKRFGVKMGALSAKIESAARTQNISETISKTIPML*
Ga0078894_110172072	3300005662	Freshwater Lake	MESAKVFAETVIRNRKEALNLKRFGVKMGALAAKLESAHRT*
Ga0078894_112024391	3300005662	Freshwater Lake	MDSAKVFAETVIRNRKEALNLKRFGVKMGALAAKLESAYRT*
Ga0078894_112371731	3300005662	Freshwater Lake	MENAKVFAENVIRNRKEAINLRRFGVKMGALASKLESAYRT*
Ga0078894_117892231	3300005662	Freshwater Lake	MDNAKIFAETVIRNRKEALNLKRFGVKMGALAAKLESAHRTQNIS*
Ga0070743_102007612	3300005941	Estuarine	MEKGQMENAKIYAETVIRQRKEAINVRRFGVKMGALAAKIEGAART*
Ga0075158_100749141	3300005987	Wastewater Effluent	MESAKIFAENVIRNRKEALNLKRFGVKMGALASKLESAYRTQQISETISKTVPML*
Ga0075158_106290892	3300005987	Wastewater Effluent	MNKGNMDSARIFAENVIRNKKEALNLKRFGIKMGALASKLESAYRTQ*
Ga0075160_107116141	3300005988	Wastewater Effluent	MENAKVFAENVIRNRKEAINLRRFGVKMGALAAKIESAART*
Ga0075501_12511502	3300006355	Aqueous	MENAKVFAENVIRNRKEAIALRRFGVKMGALAAKIESAARTQDMANTIS*
Ga0099654_106049882	3300006415	Lake	MENAKIYAENVIRNRKEALNLRRFGVKMGALSAKLESAHRTQEVSK*
Ga0075467_102677793	3300006803	Aqueous	MENAKVYAENVIRNRKEAINLRRFGVKMGALSAKLESAHRT*
Ga0075467_104708721	3300006803	Aqueous	MENAKIYAENVIRNRKEAINLRRFGVKMGALSAKLESAHRT*
Ga0075467_104836691	3300006803	Aqueous	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKLEGAYRTQ*
Ga0075473_103130071	3300006875	Aqueous	LLTSGQALDKGQMENAKIYAENVIRNRKEALNLRRFGVKMGALSAKLESAYRT*
Ga0105050_107983641	3300007516	Freshwater	MDSAKVFAETVIRNRKEALNLKRFGVKMGALAAKLESAYRTQ*
Ga0102828_11740382	3300007559	Estuarine	ENAKVFAENVIRNRREAISLRRFGVKMGALAAKIESAARTNELSNTIASTVPLL*
Ga0102918_12536001	3300007593	Estuarine	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKIESAARTQDI
Ga0105735_10538282	3300007860	Estuary Water	MENAKVFAENVIRNRREAISLRRFGVKMGALAAKIESAARTNELSNTIASTVPLL*
Ga0105736_11072551	3300007861	Estuary Water	MENAKIYAENVIRNRKEALNLRRFGVKMGALSAKLESAHRT*
Ga0114350_11633242	3300008116	Freshwater, Plankton	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKLESAYRTQEISNTIA*
Ga0103737_10464562	3300008934	Ice Edge, Mcmurdo Sound, Antarctica	ALQKNQVDNAKIFAENVIRQRKEAINTRRFGVKMSALATKVEGAARTQEMSR*
Ga0103502_101836161	3300008998	Marine	MNKIKAALDKNQMENAKMFAENVIRNRKEAINLRRFGIKMGALSAKLESAHRT*
Ga0102963_13253352	3300009001	Pond Water	MENAKIYAENVIRNRKEALNLRRFGVKMGALSSKLESAYRTQEISNTIA*
Ga0102885_11397271	3300009142	Estuarine	MENAKIFAENVIRNRKEALNLRRFGVKMGALAAKLESAHRTQEISTQI*
Ga0114979_107106631	3300009180	Freshwater Lake	MESAKVFAENVIRSKKEALHVRRFGVKMQALAQKVESAARTQ*
Ga0103842_10382791	3300009216	River Water	MDQAKIHAETVIRERKEALNIRRFGVKMGALSSKLESAHRTQEMSA*
Ga0103873_10610722	3300009265	Surface Ocean Water	MEKAERKKIMDALQKNQMENAKVFAENVIRNRKEAINLRRFGVKMGALASKIESAART*
Ga0103873_11210232	3300009265	Surface Ocean Water	NQMENAKVFAENVIRNRKEALNLRRFGVKMGALAAKLESAHRT*
Ga0103876_10588561	3300009269	Surface Ocean Water	MAKIKAALDKNQMENAKVFAENVIRNRKEALNLRRFGVKMGALAAKLESAYRT*
Ga0103880_100600672	3300009279	Surface Ocean Water	MENAKVFAENVIRNRKEALNLRRFGVKMGALAAKLESAYRT*
Ga0115005_116985051	3300009432	Marine	MDQAKIHAETVIRERKEALNLRRFGVKMGALSSKLESAHRTQEMSAQIQKSVPLL*
Ga0115008_106638211	3300009436	Marine	MDTAKMYAESAIRAKKEALNVRRFGVKMGALAGKVESAART*
Ga0115008_114594012	3300009436	Marine	MENAKIYAENIIRNRKESINLRRFGVKMGALAAKLESAHRTQ*
Ga0115007_103077441	3300009441	Marine	MENAKMFAENVIRNRKEAINLRRFGIKMGALSAKLESAHRTNEIS*
Ga0115103_18543752	3300009599	Marine	MNKGQMDNAKIYAETVIRQKKEAQNVRRFGVKMGALAQKIEGAART*
Ga0115103_18988191	3300009599	Marine	MEKAERKKIIDALNKNQMENAKVYAENVIRNRKEAINLRRFGVKMGALSSKIESAART*
Ga0115102_107978921	3300009606	Marine	MARIKAALDKNQMENAKIYAENVIRNRKEAINLRRFGVKMGALSAKLESAHRTQ*
Ga0115104_110907742	3300009677	Marine	MDTAKIHAETIIRNKKEALNLRRYGVKMGALASKLESAHRT*
Ga0129342_13068271	3300010299	Freshwater To Marine Saline Gradient	MDEAKIYAETVIRTRKEAINVRRFGVKMAALSQKIESAARTQQMS*
Ga0136644_103669693	3300010334	Freshwater Lake	MENAKVFAENVIRNRKEAINLRRFGVKMGALASKLESAYRTQEISNTIAQSVPLL*
Ga0136551_10955002	3300010388	Pond Fresh Water	LNKGNLENAKIFAETVIRNRKEALNVKRFGVKMGALASKIESAART*
Ga0138271_11341252	3300012780	Freshwater Lake	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKLESAYRT*
Ga0164293_104612862	3300013004	Freshwater	LENAKIFAETVIRNRKEAINLKKFGVKMGALASKIESAART*
Ga0164293_108447242	3300013004	Freshwater	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKLESAYRTHEISNTIA*
(restricted) Ga0172367_103529812	3300013126	Freshwater	MDSAKVFAETVIRNRKEALNLKRFGVKMGALASKLESAYRT*
(restricted) Ga0172373_103110572	3300013131	Freshwater	MEFAKVYAENAIRIRKEALQIQRFSAKMAAVGAKLESAYRTQQISQQIKQTVPKLQ*
Ga0182016_103213231	3300014493	Bog	MDSAKIFAENVIRNKKEALNLKRFGVKMGALSAKLESAYRT*
Ga0186577_1075962	3300016882	Host-Associated	MDNAKIYAETVIRNKREALNVRRFGVKMTALSAKIESAARTQQMS
Ga0186524_1136792	3300017107	Host-Associated	MDNAKIFAEDLIRNRKEALNLRRFGVKMGALSSKLESAYRTQ
Ga0186524_1145701	3300017107	Host-Associated	MGEAAQKKKVKDALDKGQMDNAKIFAEDLIRNRKEALNLRRFGVKMGALSSKLESAYRTQ
Ga0186523_1112631	3300017166	Host-Associated	MENAKIYAENVIRNRKEAINLRRFGVKMGALSAKLESAHRTQQIST
Ga0181380_11251021	3300017782	Seawater	MENAKVFAENVIRNRKEALNLRRFGVKMGALGAKLESAHRT
Ga0192889_10567872	3300018657	Marine	MENAKVFAENVIRNRKEAINLRRFGVKMGALSAKLESAHRTQEMSKQIS
Ga0193159_10295652	3300018666	Marine	MKKIRDALNKGQMDNAKVFAENVIRNRKEAINLRRFGVKMGALSAKLESAHRTQEMSQ
Ga0192944_10572062	3300018692	Marine	MNKGQMENAKVFAETIIRQKKEALNVRRFGVKMAALSQKIESAYRTQ
Ga0193539_10385952	3300018706	Marine	MNKIKAALDKNQMENAKMFAENVIRNRKEAINLRRFGIKMGALSAKLESAHRT
Ga0193478_10436983	3300018769	Marine	MTKIKAALDKNQMENAKIFAENVIRNRKEAINLRRFGVKMGALSAKLESAHRT
Ga0193478_10480171	3300018769	Marine	MNKIKQALDKNQMENAKIFAENIIRNRKEAINLRRFGVKMGALSAKLESAHRTQ
Ga0192872_10890781	3300018813	Marine	IKAALDKNQMENAKIFAENVIRNRKEAINLRRFGVKMGALAAKLESAHRT
Ga0193302_10678392	3300018838	Marine	MENAKIFAENVIRNRKEAINLRRFGVKMGALAAKLESAHRTQ
Ga0193553_11383831	3300018873	Marine	MENAKVFAENVIRNRKEALNLRRFGVKMGALAAKLESAYRT
Ga0193066_102288531	3300018947	Marine	MENAKVFAENVIRNRKEAINLRRFGVKMGALSAKLELSHRTQEMSKQIS
Ga0193531_102456592	3300018961	Marine	MTKIKAALDKNQMENAKIFAENVIRNRKEAINLRRFGVKMGALSAKLESAHRTQ
Ga0192873_101749281	3300018974	Marine	MTKIKAALDKNQMENAKIFAENVIRNRKEAINLRRFGVKMGALAAKLESAHRT
Ga0192873_103868033	3300018974	Marine	MQKEGAERKKILDAMSKGRTDEAKIYAETVIRNRKEAINVRRFGVKMGALASKIEGAART
Ga0193030_102869743	3300018989	Marine	DKNQMENAKVFAENVIRNRKEAINLRRFGVKMGALSAKLESAHRTQEMS
Ga0193430_100900882	3300018995	Marine	MNKIKQALDKNQMENAKIFAENVIRNRKEAINLRRFGVKMGALAAKLESAHRT
Ga0192916_101729151	3300018996	Marine	MENAKIFAENVIRNRKEAINLRRFGVKMGALAAKLESAHRT
Ga0192916_102092741	3300018996	Marine	LDKNQMENAKVFAENVIRNRKEALNLRRFGVKMGALAAKLESAYRTQEIS
Ga0193257_101790302	3300018997	Marine	MKLEGSEKNEMKKIKDALDKNQMENAKVFAENVIRNRKEALNLRRFGVKMGALAAKLESAYRT
Ga0193514_101940432	3300018999	Marine	MKKIKDALDKNQMENAKVFAENVIRNRKEAINLRRFGVKMGALSAKLESAHRT
Ga0193514_102684861	3300018999	Marine	KIFAENVIRNRKEAINLRRFGVKMGALAAKLESAHRT
Ga0193514_103191911	3300018999	Marine	NQMENAKVFAENVIRNRKEAINLRRFGVKMGALSAKLESAHRT
Ga0192926_103625002	3300019011	Marine	EMAKIKAALDKNQMENAKMFAENVIRNRKEAINLRRFGIKMGALSNKLESAHRTQEISSTIQ
Ga0192951_103348693	3300019022	Marine	METAKIHAETVIRNKKEAISIRRYGVKLGALASKLESAYRT
Ga0192981_102127351	3300019048	Marine	MENAKVFAENVIRNRKEAINLRRFGVKMGALASKIDSAARTQ
Ga0192981_103724972	3300019048	Marine	MENAKVYAEDVIRNRKEALNLRRFSVKMGALASKLEGAYRTQQVSETIANSVPML
Ga0188830_10231972	3300019085	Freshwater Lake	MENAKIYAETVIRQRKEAINVRRFGVKMGALAAKIEGAART
Ga0193515_10575954	3300019134	Marine	QGEKAEINKIKAALDKNQMDNAKMFAENVIRNRKEAINLRRFGIKMGALSAKLESAHRT
Ga0193112_10870161	3300019136	Marine	MKKIKDALDKNQMENAKVFAENVIRNRKEAINLRRFGVKMGALSAKLESAHRTQEMS
Ga0193112_10996851	3300019136	Marine	MAKIKAALDKNQMENAKVFAENVIRNRKEALNLRRFGVKMGALAAKLESAYRT
Ga0188870_101351751	3300019149	Freshwater Lake	MDTAKMYAESAIRAKKEALNVRRFGVKMGALAGKVESAART
Ga0194244_100719623	3300019150	Marine	MENAKVFAENVIRNRKEALNLRRFGVKMGALAAKLESAYRTQEIS
Ga0196976_11309011	3300020147	Soil	MENAKIYAENVIRNRKEALNMKRFSVKMGALSAKLESAYRTQ
Ga0211726_106345841	3300020161	Freshwater	MENAKIFAENIIRNRKEAINLRRFGVKMGALAAKLESAHRTQEISQTI
Ga0194134_102202002	3300020179	Freshwater Lake	MENAKIYAENVIRNRKEALSLRRFGVKMGALSAKLESAYRTQEVSK
Ga0196964_101082742	3300020202	Soil	MENAKIYAENVIRNRKEALNLKRFSVKMGALAAKLESAYRT
Ga0194125_104505221	3300020222	Freshwater Lake	MENAKVFAENVIRNRKEAINLRRFGVKMGALASKLESAYRT
Ga0214200_10333502	3300020725	Freshwater	MDNAKVFAETVIRNRKEALNLKRFGVKMGALAAKLESAYRTQNISETISKTVPML
Ga0194133_103783202	3300021091	Freshwater Lake	MENAKIYAENVIRNRKEALSLRRFGVKMGALSSKLESAYRTQEVSK
Ga0194130_103506111	3300021376	Freshwater Lake	MENAKVFAENVIRNRKEAINLRRFGVKMGALASKLESAYRTQEISNTIA
Ga0194130_104949171	3300021376	Freshwater Lake	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKIESAART
Ga0194117_103161722	3300021424	Freshwater Lake	MENAKVFAENVIRNRKEAISLRRFGVKMGALSSKIESAARTQDLSNTI
Ga0063103_10921051	3300021927	Marine	DCLSKNQMDQAKIHAETVIRERKEAMNIRRFGVKMGALSSKLESAHRTQEMSA
Ga0063108_10655911	3300021940	Marine	MENAKMFAENVIRNRKEAINLRRFGIKMGALSAKLESAHRTNEIS
Ga0209634_12934602	3300025138	Marine	MENAKVYAEDVIRNRKEAINMRRFGVKMGALASKLEGAYRTQ
Ga0208544_102154123	3300025887	Aqueous	MENAKVYAENVIRNRKEAINLRRFGVKMGALSAKLESAHRT
Ga0208544_102215641	3300025887	Aqueous	MENAKIYAENVIRNRKEAINLRRFGVKMGALSAKLESAHRT
Ga0208544_103077461	3300025887	Aqueous	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKLEGAYRTQ
Ga0208916_102433952	3300025896	Aqueous	MENAKVFAENVIRNRREAISLRRFGVKMGALAAKIESAARTNELSNTIASTVPLL
Ga0208275_11106011	3300026182	Marine	MDNAKVYAETVIRNRKEAINVRRFGVKMAALSSKIEGAARTQQMS
Ga0208921_10688681	3300027188	Estuarine	MEKGQMENAKIYAETVIRQRKEAINVRRFGVKMGALAAKIEGAART
Ga0208922_10436362	3300027197	Estuarine	MEKGQMENAKIYAETVIRQRKEAINVRRFGVKMGALTAKIEGAART
Ga0208445_10112162	3300027245	Estuarine	MENAKIFAENVIRNRKEALNLRRFGVKMGALAAKLESAHRTQEISTQI
Ga0209596_13545971	3300027754	Freshwater Lake	LNKGNMDNAKIFAETVIRNRKEALNLKRFGVKMGALAAKLESAHRTQNVS
Ga0209770_102194241	3300027769	Freshwater Lake	MESAKVFAETVIRNRKEALNMKRFGVKMGALAAKLESAYRTQ
Ga0209175_101636521	3300027781	Wastewater Effluent	MESAKIFAENVIRNRKEALNLKRFGVKMGALASKLESAYRTQQISETISKTVPML
Ga0207421_102625312	3300027784	Alkaline Sediment	MESAKIFAENVIRNKKEALNLKRFGVKMGALASKLESAYRTQ
Ga0209174_104095691	3300027789	Wastewater Effluent	MNKGNMDSARIFAENVIRNKKEALNLKRFGIKMGALASKLESAYRTQ
Ga0209229_104124481	3300027805	Freshwater And Sediment	LNKGNLDNAKIFAETVIRNRKEALNVKRFGVKMGALSAKIESAARTQNISETISKTIPML
Ga0209450_104852271	3300027885	Freshwater Lake Sediment	MENAKIFAENIIRNRKEAINLRRFGVKMGALAAKLESAHRTQEIS
Ga0247566_10867381	3300028335	Seawater	MEKAERKKIIDALNKNQMENAKVYAENVIRNRKEAINLRRFGVKMGALSSKIESAART
Ga0311341_104006501	3300029908	Bog	MENAKIYAENVIRNRKEALNLKRFGVKMGALAAKLESAYRT
Ga0210281_10557141	3300030539	Soil	KIYAENVIRNRKEALNLKRFSVKMGALAGKLESAYRT
Ga0210271_105527401	3300030545	Soil	LQKGQMDNAKIYAENVIRNRKEALNLKRFSVKMGALAAKLESAYRT
Ga0210257_102006102	3300030549	Soil	ENAKIYAENVIRNRKEALNLKRFSVKMGALASKLESAYRT
Ga0210258_107188132	3300030572	Soil	KGQMENAKIYAENVIRNRKEALNLKRFSVKMGALAAKLESAYRTQ
Ga0210260_102130232	3300030577	Soil	MEQLEKNERKKIVDAMNKGQMENAKIYAENVIRNRKEALNLKRFSVKMGALAGKLESAYR
Ga0210286_12485752	3300030597	Soil	MNKGQMENAKIYAENVIRNRKEALNLKRFSVKMGALASKLESAYRT
Ga0210253_105241201	3300030603	Soil	KIIDAMNKGQMENAKIYAENVIRNRKEALNLKRFSVKMGALASKLESAYRT
Ga0210251_110022021	3300030624	Soil	MENAKIYAENVIRNRKEALNLKRFSVKMGALAAKLESAYRTQ
Ga0210259_104036431	3300030625	Soil	ALNKGQMDNAKIYAENVIRNRKEALNLKRFSVKMGALAAKIESAYRTQ
Ga0210291_104309091	3300030626	Soil	MDNAKIYAENVIRNRKEALNLKRFSVKMGALASKLESAYRT
Ga0210250_115410052	3300030632	Soil	QMENAKIYAENVIRNRKEALNLKRFSVKMGALAAKLESAYRTQQISETIS
Ga0265459_134382051	3300030741	Soil	KIVDALAKNQMDNAKIYAENVIRNRKEALNLKRFSVKMGALAAKLESAYRT
Ga0075375_110015031	3300030971	Soil	MESAKIFAENVIRNRKEALNMKRFGVKMGALASKLESAYRT
Ga0307980_10928591	3300031216	Saline Water	MEKNERKKILDALNKNQTENAKIYAETVIRQRKECINVRRFGVKMGALAQKIEGAARTQ
Ga0170824_1200333312	3300031231	Forest Soil	MDNAKVYAENVIRNRKEALNLKRFSVKMGALAAKLESAYRT
Ga0170819_161736172	3300031469	Forest Soil	QMENAKIYAENVIRNRKEALNLKRFSVKMGALASKLESAYRTQ
Ga0170818_1117430452	3300031474	Forest Soil	VVDALNKGQMENAKIYAENVIRNRKEALNLKRFSIKMSALSSKLESAYRT
Ga0302320_117051091	3300031524	Bog	NMDSAKIFAENVIRNKKEALNLKRFGVKMGALSAKLESAYRT
Ga0307489_104254282	3300031569	Sackhole Brine	MENAKVFAENIIRNRKEAINLRRFGVKMGALAAKLESAHRTQEISSQI
Ga0307993_11386472	3300031602	Marine	MDQAKIHAETVIRERKEALNLRRFGVKMGALSSKLESAHRTQEMSAQIQKSVPLL
Ga0311351_114256571	3300031722	Fen	MNKNNMDSAKIFAENVIRNKKEALNLKRFGVKMGALAAKLESAYRTQ
Ga0315899_108610602	3300031784	Freshwater	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKLESAYRTQEISNTIA
Ga0315899_109483521	3300031784	Freshwater	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKIESAARTQDISNTIAQSVPLL
Ga0302319_111311891	3300031788	Bog	MDSAKIFAENVIRNKKEALNLKRFGVKMGALSAKLESAYRT
Ga0315905_108122002	3300032092	Freshwater	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKLESAYRT
Ga0315905_114392552	3300032092	Freshwater	MENAKVYAENVIRNRKEAINLRRFGVKMGALASKLESAYRTQEISDTIA
Ga0315742_122222101	3300032756	Forest Soil	MENAKIYAENVIRNKKEALNLKRFSVKMGALAAKLESAYRT
Ga0315742_130995272	3300032756	Forest Soil	GQMENAKIYAENVIRNRKEALNLKRFAVKMGALAGKLESAYRT
Ga0310130_0140746_384_533	3300034073	Fracking Water	MENAKVFAENVIRNRKEAIALRRFGVKMGALAAKIESAARTQDMANTIS
Ga0335039_0596192_346_489	3300034355	Freshwater	MNKGNMDSARIFAENVIRNRKEALNLKRFGIKMGALAAKLESAYRTQ
Ga0335039_0639790_234_374	3300034355	Freshwater	MENAKIYAENVIRNRKEALNLRRFGVKMGALSAKLESAYRTQEVSK