3300016882: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with 33 psu seawater, 19 C, 33 psu salinity and 331 ?mol photons light - Strombidium rassoulzadegani ras09 (MMETSP0449_2)

Overview

Basic Information

• IMG/M Taxon OID: 3300016882
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128947 | Gp0212289 | Ga0186577
• Sample Name: Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in f/2 medium with 33 psu seawater, 19 C, 33 psu salinity and 331 ?mol photons light - Strombidium rassoulzadegani ras09 (MMETSP0449_2)
• Sequencing Status: Permanent Draft
• Sequencing Center: National Center for Genome Resources
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 13529730
• Sequencing Scaffolds: 21
• Novel Protein Genes: 26
• Associated Families: 25

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	7
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Sapindales → Sapindaceae → Hippocastanoideae → Acereae → Acer → Acer yangbiense	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	7
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → The Marine Microbial Eukaryote Meta/transcriptome Sequencing Project (mmetsp)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine tidal flow zone → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): 41.0
  • Long. (^o): -72.0
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000055	Metagenome / Metatranscriptome	3096	Y
F000075	Metagenome / Metatranscriptome	2622	Y
F000787	Metagenome / Metatranscriptome	891	Y
F000935	Metagenome / Metatranscriptome	828	Y
F001461	Metagenome / Metatranscriptome	690	Y
F009426	Metagenome / Metatranscriptome	318	Y
F011523	Metagenome / Metatranscriptome	290	Y
F011815	Metagenome / Metatranscriptome	287	Y
F012918	Metagenome / Metatranscriptome	276	Y
F015263	Metagenome / Metatranscriptome	256	Y
F018935	Metagenome / Metatranscriptome	232	Y
F019022	Metagenome / Metatranscriptome	232	Y
F024569	Metagenome / Metatranscriptome	205	Y
F031108	Metagenome / Metatranscriptome	183	Y
F037419	Metagenome / Metatranscriptome	168	Y
F040128	Metagenome / Metatranscriptome	162	Y
F044539	Metagenome / Metatranscriptome	154	N
F045792	Metagenome / Metatranscriptome	152	Y
F049933	Metagenome / Metatranscriptome	146	Y
F056633	Metagenome / Metatranscriptome	137	Y
F058438	Metagenome / Metatranscriptome	135	Y
F074016	Metagenome / Metatranscriptome	120	Y
F075328	Metagenome / Metatranscriptome	119	Y
F098038	Metagenome / Metatranscriptome	104	Y
F105299	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0186577_101843	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1653
Ga0186577_102479	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Sapindales → Sapindaceae → Hippocastanoideae → Acereae → Acer → Acer yangbiense	1478
Ga0186577_102535	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1465
Ga0186577_103222	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1320
Ga0186577_103393	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Choreotrichia	1286
Ga0186577_104109	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1159
Ga0186577_104700	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	1060
Ga0186577_104922	Not Available	1029
Ga0186577_106065	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	871
Ga0186577_106379	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	839
Ga0186577_106422	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	834
Ga0186577_106639	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	811
Ga0186577_106841	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	787
Ga0186577_106863	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	784
Ga0186577_107596	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	711
Ga0186577_107814	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	691
Ga0186577_108287	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	649
Ga0186577_108809	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	605
Ga0186577_109031	Not Available	584
Ga0186577_109066	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	581
Ga0186577_109280	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani	559

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0186577_101843	Ga0186577_1018433	F044539	MTPLPPTADPKKWRRNYDNLGDKDRQEMLVDEIFALYLYRMSNRVNQYYYKIVLAYVIFFRECLNEYGWGKKIESENINIDSNPELKQDIETKLFCLVNNAEHAPEICNEFVTVYMEYKKTIFDIPKHDQIDLTINLCHWLFECQFTCSKLTMIA
Ga0186577_102479	Ga0186577_1024792	F009426	MSAKVNKDVKLSLYMVLGETSYSIIIFMTTSPCVISVGAAREALFEGKADYCMFVCE
Ga0186577_102535	Ga0186577_1025351	F074016	MPAGIPQPPDSVLENLISECEDHTFWLNFRKAAPMLFCAAVEHNNDIKQVRDLSFMEELLKVKSMMNVMASKLGQSDAGIDIIEYSMATQMLENKLSVLKSLNTTVDGDNEEKLTFNVQGTNKAV
Ga0186577_103222	Ga0186577_1032221	F075328	MKVLNKYWDSDLCLTKIKINEKMKTVGFDTKNNRLSIVTYDRTIYFVDIPKEQTRYIESTECRFY
Ga0186577_103393	Ga0186577_1033932	F058438	MTEEDPEALANEPLSPSLDSQLEMMVPSGRRFTGRMFPTEREAGESRIN
Ga0186577_104109	Ga0186577_1041092	F049933	LKPTQIPRGCYREIRKFNACTVEKSKEACVNEKISIMEVCPEHVLEGLREKRKWMLRAETIDNQTYKRAMTVSDFNKGRSVADLECKDWTYGHPSNLRGESTWQDDRYDPTKYSHPHRYDNVNFPEQEYKDVFGGTMGTAAAAEADKYKIGLLSGTSTAMMEHEANKRKESLKTAVPKKE
Ga0186577_104693	Ga0186577_1046931	F098038	LKSREATVLKMTTQTFIKYDKEYLPGYTGHVPKKNEIFGCTAGDINKIITKKGQKPSEHDIDVAVIKP
Ga0186577_104700	Ga0186577_1047001	F000787	MKFFAIAALFAAVEAKHHHHNTEFVDISGKPPAVGLGHAVIPATREEYDNAATLWKGDWAKYRAAHPNDQDCSISESDNWKGAQQCSQSWECRGARLCERGGWCSGYDGCEGTPLPDQAPGLASDC
Ga0186577_104922	Ga0186577_1049221	F056633	MDKVREMAQKLGVPFTNDLMALGSNSAISDALIEKAVAAGKTEAQINAAMATL
Ga0186577_106065	Ga0186577_1060651	F012918	KNMTSTHVKSLIPLKDSHLYASNGFASQDEQNAYDDRQRRMVNYQVTDYVENNDLVCFGLSSHDVEEWMPKYTKKAEHELNVLKSWIHGRDIEDLFVRPALKSDYNYNSYATRAQVRVALALAVIRELPVKNFYIRCWLVYGYYMFFVSNGLARGLKPARPLVIYQTQSERRTLLNYPDLFWWTQTRVLPRNPPMPSTDIEWRTRQTPVFHQYHKTTYRYRLRKPRFVPWDGSQNQPVMPFLHDSGTDVTNGTFRRNCNSTPALK
Ga0186577_106379	Ga0186577_1063791	F000935	MKYTVAMCLLGAVASTQIDSTNQEKLFNLMQLQDGPCPEPLEITEDELHYQLGEFSRTFEMQYWDNAMKIKKELGEKGLNPRFAVTTKELYDKSFSFPKVRNYDYAVENMNELEHYEDNLNGNIGNNYHLQKFLEVAKKVRANLNDKYDIGFIDPGVEGDWQ
Ga0186577_106422	Ga0186577_1064222	F037419	MWGLTVVSGIRFMIGFSKAPTTNGDEQEIYFRLNTIFQKNKFGYNTRFMSDFDLLLEGVLNERFIDESTLYYDNPVSTKEIEDVEQGLNGEVSEDDIKNMLKDKQVHGAHSKVTRYPGRMASNYTKSDDLSCYKVHPEGVKPKF
Ga0186577_106639	Ga0186577_1066391	F011523	PWPRRKERKMTEYLYDRENPKSNFRQRLTGIEGFMYGNPNMNERADMIGRALAKETDGDFTKFVMKTAKPRDMAQKWRMFKNIARFVKNPFGYLFWKQMTITSQNRFRLTWFLLIWHLYQSFALYMLTKNKKEGMIHKWYWHIGMVNHYYGAPKSRYFFPADRKKNYVRYSNFHQMRQNKRTSMIHTNWWCRDQNFRKYFDMRKRNDIKPALSGFKDEPIYNEQMRQMQEWIDLRHSKQS
Ga0186577_106841	Ga0186577_1068411	F024569	DYKNKMYYNYLNRDQLYLKSYRTHNLWFNQYHKKVRTPRVTAFHIGFLKRMGKSYSGTRVVAFMWGLTVVSGIRFMIGFSKAPTTNGDEQEIYFRLNTIFQKNKFGYNTRFMSDFDLLLEGVLNERFIDESTLYYDNPVSTKEIEDVEQGLNGEVSEDDIKNMLKDKQVHGAHSKVTRYPGRMASNYTKSDDLSCYKVHPEGVKPKF
Ga0186577_106863	Ga0186577_1068632	F011815	MSFGVSFSQTKRNDHARELSTKVSTAIKEYSAKLLTKVESQAVETLTEQNAHNIAAVIFYDVQLQDAMKGLGMTEDADLVLAVNRLKSLQKLYLFEQRGGENYLG
Ga0186577_107020	Ga0186577_1070201	F000055	YSSLFMIAAFLGASSVEQSQAVYLAKRKKKEDPLPTAADTPASGYYGADEDDVMNNIFNHYAVEVTNAAGQKTGQKVLYKDGAQKACAEVLLVTKQVSEAKMEQYMAEFFPRTWAKFDINNGGEIDITESHTFMRSLLGRLNQFVLAPGSLTDIKVE
Ga0186577_107530	Ga0186577_1075301	F031108	VDGTTWKDMHISGFNGADEDEIMDNIFGRFSQEGRTPSGHKTGQKLLLKDDAKIAAGTILEAAHKLSPQDVPSYLDENFEKSWSHFDQNHEGWIRYEETHTFQRFLQGHLN
Ga0186577_107596	Ga0186577_1075962	F045792	MDNAKIYAETVIRNKREALNVRRFGVKMTALSAKIESAARTQQMS
Ga0186577_107814	Ga0186577_1078141	F105299	VQQQLAQRRAQEEKDLEQSTEDLNYELFTFSKTLKPSAMHKALAIKEKMESQGHPPAHFRVSLVNLWSKGFKHEAVANYKFVKDKLQELDIAEKNLNRNIDSKAQLDIFLGTATDVKKQFKQRYGEAEWEP
Ga0186577_108287	Ga0186577_1082871	F019022	EEMVFHVTNYMRETNVWAIRKVRWITWSLGLSIPIYRNTYWDYLGRRVAWKDSLGYYGDEDYKKKNNEELKANWGYTPRYDPVYWFSMKKRKY
Ga0186577_108585	Ga0186577_1085851	F000075	FFAVAALATVSANTYDFMGEDELLSQLSSTLASAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK
Ga0186577_108809	Ga0186577_1088091	F018935	MPKYSYYDYIYNYNSKFLNKYQSDTHWYSGRGSHFMELLRVKSVRLKSNRNWMWFDIRFGTKFLYMIYMPQLFFVTISYLLSPAWRRLDERYHLRFAEGETDDIDDVEPFVTHDQRKKPMTRRKYADVVKIVYGGVEEYDYVTDQPMRYR
Ga0186577_109031	Ga0186577_1090311	F001461	KVYFRKMKFALATIALLATVEAKGEGFPEHLGEMFPNKESMYGSDWEKYKKTRQLMVDCDIYESENWLGTGKCKYSWECRGARMCEGQGWCYGDDSCEEVHE
Ga0186577_109066	Ga0186577_1090661	F015263	MEKDKKQKHPIFNGEYEILSSLGEGNTSKVYLARSLEDPKKQVALKLLREEFLSRDEESIKSVEQEI
Ga0186577_109280	Ga0186577_1092801	F040128	TMKFAQLALFFAGAAQALKLTSNSQQTALEQVADPCEEALEVSKEELEIQLDYFSRTFDRKFYDNAMKIHEELVKQGQNPKLSVHSWELYDQSFAFPRVRRYDLVQQQMDLLQHFEDNLNQNFTNLQHLANFIRVGKQAESTLNEKYHDGEFSDPAGFDPQDEHKTTWATVKL
Ga0186577_109887	Ga0186577_1098871	F000075	MKFAAVAALATVSANKYDSMNEDELLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK