3300014967: Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Ka

Overview

Basic Information

• IMG/M Taxon OID: 3300014967
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128895 | Gp0209086 | Ga0182827
• Sample Name: Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9Ka
• Sequencing Status: Permanent Draft
• Sequencing Center: Laval University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 933455729
• Sequencing Scaffolds: 10
• Novel Protein Genes: 14
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Mat Communities From High Arctic Lakes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat → Microbial Mat Communities From High Arctic Lakes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Kuujjuarapik
• Coordinates
  • Lat. (^o): 55.275009
  • Long. (^o): -77.758484
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001880	Metagenome / Metatranscriptome	623	Y
F004655	Metagenome / Metatranscriptome	429	Y
F016391	Metagenome / Metatranscriptome	247	Y
F021667	Metagenome	218	Y
F030769	Metagenome / Metatranscriptome	184	Y
F035426	Metagenome / Metatranscriptome	172	N
F053953	Metagenome / Metatranscriptome	140	Y
F054807	Metagenome / Metatranscriptome	139	Y
F057960	Metagenome	135	Y
F087349	Metagenome / Metatranscriptome	110	Y
F093403	Metagenome / Metatranscriptome	106	N
F097376	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182827_10003114	All Organisms → cellular organisms → Bacteria → Proteobacteria	1247
Ga0182827_10009070	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	896
Ga0182827_10010790	Not Available	848
Ga0182827_10012256	Not Available	816
Ga0182827_10017704	Not Available	726
Ga0182827_10024605	Not Available	647
Ga0182827_10026628	Not Available	627
Ga0182827_10026703	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	626
Ga0182827_10038296	Not Available	543
Ga0182827_10044763	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182827_10000529	Ga0182827_100005292	F087349	MKGNATVALLEHVATDRGAFRRTPVASWDPFDVWLTRIKQPRDRAANSAPAGMSNGIAARRD*
Ga0182827_10003114	Ga0182827_100031142	F004655	MGTIDILSPVALGPTDVQPLSPRVGSLRGAVLGLRVDRAWPSWSLAADELARLARTELDVRDVVVFDPGSRIGRPEEESHKVVEFARTVDAAVVGLGT*
Ga0182827_10009070	Ga0182827_100090702	F057960	MVFGLFKKTPKLEVTFTPTIAVARELRKEVEVAGDLVIRNVGKDAELTDLETVLVAGGTRRIDLDLPATWRGARPSAAG*
Ga0182827_10010790	Ga0182827_100107902	F001880	VILWVLWRRGLLRRFDREKVGFFLGHGADRLDLSRRYPLWRRLGLWHMLCSPAYAAGVARWVEYRMNLFDGIEG*
Ga0182827_10012256	Ga0182827_100122562	F053953	MDEPTDAKECCRRTRERWERRIRAYYASFPVIKDVPCDGCREILEIRVFASPVA*
Ga0182827_10017704	Ga0182827_100177042	F054807	MGFASHLGPWLLGTNKYTTGTTAGTLQNMGATIVLQAGSY
Ga0182827_10017983	Ga0182827_100179832	F093403	TLAAIALVEMADRLNHGVWANEGSLSFIVGGFSGFLLNEAGADFAKHGWLAFALMIGCAVFVYAVFSLVL*
Ga0182827_10024605	Ga0182827_100246052	F097376	MKKAVAPKKSKTAADVVSQKKQAKSGPVELDLAELKKVSGGLPRGGGWVAAK*
Ga0182827_10026628	Ga0182827_100266283	F016391	YTDLATAIQLAKSHGLSTQEIVRLLSGSTPHHEALEVARKAAPLLDIGVKEFMRLRKNG*
Ga0182827_10026703	Ga0182827_100267031	F030769	VSAEFWRKDRNRREEMSMAYGASAETRSRYRDLDELIDYHEYEGEWTLGFEEKWLKPRLKALGYTHVRCFGGKTCEYDGSFRARICELARPGSGRTEFFVYG*
Ga0182827_10032843	Ga0182827_100328431	F035426	MLNQPIYAPVPMLAADVNCFWALEQDQESYNREVYLPDAYIEVLINVGAPLMLESEYGMLELPRAFVNPLQNKPLRIRAAGFCQMISMQLYPWAVKPILNIDADPSTVHVIGLDADWQRFADDLTQIVAHRGYGEAIDCYQEFVCKTAYRHKHDLMLIRTVGHLLHRSHGQIRMADLAA
Ga0182827_10033147	Ga0182827_100331471	F021667	SYLTLRLAFDRLLSNADPGSKPAMLEFLDVLAGTNLASEAAGKRYASQREKIESFIDAEYDEETLALINRTIDEIA*
Ga0182827_10038296	Ga0182827_100382961	F053953	VIEKDCCQRTRVRWAKRIAAYYTSFPVIKDVPCDECRER
Ga0182827_10044763	Ga0182827_100447632	F001880	VILLALWRRGLLGRAINAEKLRFFLGLEPDRLLLSRRYPLWRILHPVRLLVSRHHADGVARWLEYRMNLYDGIEG*