3300013867: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5-11 gowning area SPAdes reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300013867
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0095512 | Gp0111884 | Ga0181467
• Sample Name: Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5-11 gowning area SPAdes reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 72956651
• Sequencing Scaffolds: 11
• Novel Protein Genes: 13
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2
Not Available	5
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa
• Type: Engineered
• Taxonomy: Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room → Clean Room Microbial Communities From Nasa Spacecraft Assembly Facility At Jet Propulsion Laboratory, Pasadena, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: USA: Jet Propulsion Laboratory, Pasadena, California
• Coordinates
  • Lat. (^o): 34.1
  • Long. (^o): -118.1
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002654	Metagenome / Metatranscriptome	539	Y
F009488	Metagenome	317	Y
F021064	Metagenome / Metatranscriptome	220	Y
F025062	Metagenome	203	Y
F034461	Metagenome / Metatranscriptome	174	Y
F038404	Metagenome / Metatranscriptome	166	Y
F045048	Metagenome / Metatranscriptome	153	Y
F059667	Metagenome / Metatranscriptome	133	Y
F065766	Metagenome / Metatranscriptome	127	Y
F068786	Metagenome / Metatranscriptome	124	Y
F083218	Metagenome	113	Y
F085478	Metagenome / Metatranscriptome	111	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0181467_100613	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	17793
Ga0181467_101278	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	10856
Ga0181467_102408	Not Available	5600
Ga0181467_102719	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	4882
Ga0181467_102746	All Organisms → cellular organisms → Eukaryota → Opisthokonta	4807
Ga0181467_105548	All Organisms → cellular organisms → Archaea	1945
Ga0181467_105588	Not Available	1927
Ga0181467_116452	Not Available	668
Ga0181467_116881	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	654
Ga0181467_119086	Not Available	585
Ga0181467_121279	Not Available	533

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0181467_100613	Ga0181467_1006134	F083218	MLNVRKMHNKQAYNINKKYYDKCSCKFAFCESCYWFATILVNKFNNINHCDICKKKDIHIETILS*
Ga0181467_101278	Ga0181467_1012787	F038404	MKAKFILTNIIFMIVMIILLTSLNTTKLSYSQSNTDFLTFENPLSGVQFQYTDEWIQEGSSLFGAEAECSRLPCMKLPEISTSVYPIVTEDFILENHLKEQISYHNTSQGYTPIALNETKIGEKKALQYVYTTKPPFLMEEISNELMNYEIYTTEGINLYKISFTAIDDENLDKYLHSFKNIINTFTITK*
Ga0181467_102408	Ga0181467_1024081	F059667	LGLMRLTNGKTKCNEKNLFKVALLTEKPPQINSTISCPTHGIALIKLVITVAPHNDICP*
Ga0181467_102719	Ga0181467_1027196	F034461	VLGYDFEIIYKRWKKNVVADALSRKDDDVEALFCTISIIQPDWINEARDE*
Ga0181467_102746	Ga0181467_10274613	F002654	KGNSPEQEFKVPKLLLSEIKEVFFKYNQEIGLEAAIF*
Ga0181467_105548	Ga0181467_1055482	F085478	MAKSYSKFNDINKLSLVWGQVLLILFLMSFLYFHNYVYAQLETTEKAGSIQVIKDLNKEVPSLNVIFEDQEVEMDPFMYSQINFTNKLDESKSNESKNNVVTKIGPANLYETQSDIDTKLTLKHGDKITLSYEKQPLTIKAYLIDYDTEDETEIYPIKQIDLSTFSIPTNSPSGFKSLEIRSFFDNDEQITYTTPVFIESITPEITPQNVNEDNEQGNDDNENSGD*
Ga0181467_105588	Ga0181467_1055883	F009488	MAKKGSIKKVLKWVFRGFSLFFISMLFCMVFHDAMTGVSSTTGEYCAKYGFLASQDCWYY
Ga0181467_111044	Ga0181467_1110442	F045048	IGGQCAPNSTVGLNALWKYAQNMAKKKKASLTINNATPMFSPLCTANVWLPK*
Ga0181467_116452	Ga0181467_1164521	F065766	MADEKKDEGAGDPIKILLKEALEWQRNAMMDSFA*
Ga0181467_116881	Ga0181467_1168811	F068786	MSEKKSDLVNSSEVKVMTEKGKDFIDIDVNRLQEEKFYRVEYEGDVYAVEKLPDGKIVFYEVVE*
Ga0181467_119086	Ga0181467_1190861	F025062	VKKSLFTFGLLASSLVMLVIMPFLNQNNSFLNVMAQEYDKYGDSSYSQYPTDDKKYECRTGPFEGFFVSSVEFCKHIKFDDRKDNRDNRNNNQTGTQGPVGPQ
Ga0181467_121279	Ga0181467_1212791	F059667	MCIKTNAANIKGNTKCKAKNLFKVALLTEKPPQMNSTISCPTQGIALIRLVITVAPHKDI
Ga0181467_121279	Ga0181467_1212793	F021064	LLLKSVNGITNKIKIAENIAITPNNLLGIDLNIA*