Metagenome Family F083218

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083218
Family Type	Metagenome
Number of Sequences	113
Average Sequence Length	59 residues
Representative Sequence	MSNKQTIISLDKKYYDKYNCKFAFCESCYWIATILVNKFNNINHCYNCNKKDIHIETILI
Number of Associated Samples	81
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.11 %
% of genes near scaffold ends (potentially truncated)	28.32 %
% of genes from short scaffolds (< 2000 bps)	76.99 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.027 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (14.159 % of family members)
Environment Ontology (ENVO)	Unclassified (24.779 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.363 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.91% β-sheet: 20.45% Coil/Unstructured: 63.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF00072	Response_reg	5.31
PF14947	HTH_45	2.65
PF01544	CorA	2.65
PF00149	Metallophos	1.77
PF16177	ACAS_N	1.77
PF03729	DUF308	1.77
PF00005	ABC_tran	1.77
PF00067	p450	1.77
PF01638	HxlR	1.77
PF00561	Abhydrolase_1	0.88
PF01391	Collagen	0.88
PF13675	PilJ	0.88
PF00512	HisKA	0.88
PF01176	eIF-1a	0.88
PF03741	TerC	0.88
PF13384	HTH_23	0.88
PF01895	PhoU	0.88
PF07992	Pyr_redox_2	0.88
PF00353	HemolysinCabind	0.88
PF13412	HTH_24	0.88
PF00953	Glycos_transf_4	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	2.65
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.77
COG2124	Cytochrome P450	Defense mechanisms [V]	1.77
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	1.77
COG0361	Translation initiation factor IF-1	Translation, ribosomal structure and biogenesis [J]	0.88
COG0472	UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase	Cell wall/membrane/envelope biogenesis [M]	0.88
COG0861	Tellurite resistance membrane protein TerC	Inorganic ion transport and metabolism [P]	0.88

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
All Organisms	root	All Organisms	30.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
cellular organisms	root	All Organisms → cellular organisms	29.20 %
Viruses	superkingdom	All Organisms → Viruses	1.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	28.32 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	18.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	18.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	14.16 %
Nitrosopumilales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales	3.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	14.16 %
unclassified Nitrosopumilales	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales	1.77 %
Nitrosopumilaceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	14.16 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.77 %
Nitrosopumilus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
unclassified Nitrososphaeraceae	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae	5.31 %
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	3.54 %
unclassified Nitrosopumilus	no rank	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus	1.77 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	0.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.03 %
Nitrososphaeraceae archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	5.31 %
Candidatus Nitrosocosmicus franklandus	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus franklandus	2.65 %
Nitrosopumilus sp.	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1.77 %
Nitrosopumilales archaeon	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	1.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.77 %
Candidatus Nitrososphaera evergladensis	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	0.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.88 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11774804	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus franklandus	743	Open in IMG/M
3300000787\|JGI11643J11755_11776582	Not Available	547	Open in IMG/M
3300000787\|JGI11643J11755_11776931	Not Available	755	Open in IMG/M
3300000858\|JGI10213J12805_10334007	Not Available	557	Open in IMG/M
3300000890\|JGI11643J12802_11294052	Not Available	660	Open in IMG/M
3300003267\|soilL1_10167169	All Organisms → cellular organisms → Archaea	1136	Open in IMG/M
3300003987\|Ga0055471_10037409	Not Available	1265	Open in IMG/M
3300003987\|Ga0055471_10185399	Not Available	646	Open in IMG/M
3300003997\|Ga0055466_10053399	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	1006	Open in IMG/M
3300003998\|Ga0055472_10018915	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus franklandus	1478	Open in IMG/M
3300004013\|Ga0055465_10193691	Not Available	665	Open in IMG/M
3300004157\|Ga0062590_102290800	Not Available	568	Open in IMG/M
3300004463\|Ga0063356_100679113	Not Available	1411	Open in IMG/M
3300004480\|Ga0062592_101245243	Not Available	699	Open in IMG/M
3300005093\|Ga0062594_100248436	Not Available	1298	Open in IMG/M
3300005329\|Ga0070683_102004548	Not Available	556	Open in IMG/M
3300005366\|Ga0070659_100232975	Not Available	1522	Open in IMG/M
3300005616\|Ga0068852_101355088	Not Available	733	Open in IMG/M
3300006169\|Ga0082029_1286932	Not Available	597	Open in IMG/M
3300006845\|Ga0075421_100131592	All Organisms → cellular organisms → Archaea	3136	Open in IMG/M
3300006853\|Ga0075420_100060451	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	3362	Open in IMG/M
3300006876\|Ga0079217_10046642	Not Available	1717	Open in IMG/M
3300006876\|Ga0079217_10050026	Not Available	1673	Open in IMG/M
3300006876\|Ga0079217_10136839	Not Available	1164	Open in IMG/M
3300006876\|Ga0079217_10794917	Not Available	655	Open in IMG/M
3300006880\|Ga0075429_100031721	All Organisms → cellular organisms → Archaea	4592	Open in IMG/M
3300006894\|Ga0079215_11052236	Not Available	604	Open in IMG/M
3300006918\|Ga0079216_10080296	All Organisms → Viruses → Predicted Viral	1519	Open in IMG/M
3300006918\|Ga0079216_10292384	Not Available	958	Open in IMG/M
3300006918\|Ga0079216_10327269	Not Available	922	Open in IMG/M
3300006918\|Ga0079216_10705447	Not Available	720	Open in IMG/M
3300006918\|Ga0079216_11075845	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis	631	Open in IMG/M
3300007004\|Ga0079218_10503516	Not Available	1072	Open in IMG/M
3300007004\|Ga0079218_11026573	Not Available	830	Open in IMG/M
3300009094\|Ga0111539_10037816	Not Available	5824	Open in IMG/M
3300009146\|Ga0105091_10374583	Not Available	705	Open in IMG/M
3300009168\|Ga0105104_10039609	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2601	Open in IMG/M
3300009168\|Ga0105104_10086952	All Organisms → cellular organisms → Archaea	1683	Open in IMG/M
3300009545\|Ga0105237_12663497	Not Available	511	Open in IMG/M
3300009789\|Ga0126307_10003150	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	11219	Open in IMG/M
3300009789\|Ga0126307_10040280	All Organisms → cellular organisms → Archaea	3625	Open in IMG/M
3300009789\|Ga0126307_10167169	Not Available	1763	Open in IMG/M
3300009789\|Ga0126307_11404769	Not Available	566	Open in IMG/M
3300009840\|Ga0126313_10006040	Not Available	7286	Open in IMG/M
3300010038\|Ga0126315_10515286	Not Available	764	Open in IMG/M
3300010039\|Ga0126309_10335200	Not Available	885	Open in IMG/M
3300010039\|Ga0126309_10523771	Not Available	733	Open in IMG/M
3300010040\|Ga0126308_10002209	All Organisms → cellular organisms → Bacteria	8211	Open in IMG/M
3300010040\|Ga0126308_10019257	All Organisms → cellular organisms → Archaea	3650	Open in IMG/M
3300010040\|Ga0126308_10819465	Not Available	645	Open in IMG/M
3300010041\|Ga0126312_10773630	Not Available	695	Open in IMG/M
3300010042\|Ga0126314_10364118	Not Available	1038	Open in IMG/M
3300010044\|Ga0126310_10003555	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	6492	Open in IMG/M
3300010044\|Ga0126310_10041583	Not Available	2495	Open in IMG/M
3300010044\|Ga0126310_10045693	Not Available	2401	Open in IMG/M
3300010375\|Ga0105239_11523442	Not Available	773	Open in IMG/M
3300012908\|Ga0157286_10001736	Not Available	3380	Open in IMG/M
3300012911\|Ga0157301_10021471	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	1431	Open in IMG/M
3300013306\|Ga0163162_11111213	Not Available	896	Open in IMG/M
3300013306\|Ga0163162_12010683	Not Available	662	Open in IMG/M
3300013867\|Ga0181467_100613	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	17793	Open in IMG/M
3300014311\|Ga0075322_1076913	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus franklandus	757	Open in IMG/M
3300015371\|Ga0132258_10408567	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	3374	Open in IMG/M
3300015371\|Ga0132258_11252106	All Organisms → cellular organisms → Archaea	1875	Open in IMG/M
3300015371\|Ga0132258_12161374	Not Available	1398	Open in IMG/M
3300015371\|Ga0132258_13282118	Not Available	1114	Open in IMG/M
3300015372\|Ga0132256_102140401	Not Available	664	Open in IMG/M
3300015374\|Ga0132255_100141394	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	3342	Open in IMG/M
3300015374\|Ga0132255_100194017	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	2868	Open in IMG/M
3300017792\|Ga0163161_11438769	Not Available	603	Open in IMG/M
3300018067\|Ga0184611_1015769	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	2254	Open in IMG/M
3300018073\|Ga0184624_10154816	Not Available	1009	Open in IMG/M
3300018432\|Ga0190275_10154588	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2119	Open in IMG/M
3300018432\|Ga0190275_10243013	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1732	Open in IMG/M
3300018432\|Ga0190275_11835920	Not Available	684	Open in IMG/M
3300018465\|Ga0190269_10903245	Not Available	652	Open in IMG/M
3300018466\|Ga0190268_10088518	Not Available	1394	Open in IMG/M
3300018476\|Ga0190274_10343461	Not Available	1415	Open in IMG/M
3300018481\|Ga0190271_10182498	Not Available	2068	Open in IMG/M
3300018481\|Ga0190271_10510356	Not Available	1314	Open in IMG/M
3300018481\|Ga0190271_11797345	Not Available	725	Open in IMG/M
3300019356\|Ga0173481_10002066	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	5022	Open in IMG/M
3300019767\|Ga0190267_10137740	Not Available	1044	Open in IMG/M
3300024430\|Ga0196962_10084043	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon	978	Open in IMG/M
3300025160\|Ga0209109_10574305	Not Available	501	Open in IMG/M
3300025537\|Ga0210061_1066021	Not Available	624	Open in IMG/M
3300025567\|Ga0210076_1001016	All Organisms → cellular organisms → Archaea	6858	Open in IMG/M
3300025780\|Ga0210100_1007842	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	1217	Open in IMG/M
3300025901\|Ga0207688_10888054	Not Available	564	Open in IMG/M
3300025904\|Ga0207647_10414646	Not Available	758	Open in IMG/M
3300025938\|Ga0207704_10876846	Not Available	753	Open in IMG/M
3300027650\|Ga0256866_1180065	Not Available	571	Open in IMG/M
3300027691\|Ga0209485_1180235	Not Available	648	Open in IMG/M
3300027691\|Ga0209485_1230023	Not Available	589	Open in IMG/M
3300027717\|Ga0209998_10163572	Not Available	575	Open in IMG/M
3300027886\|Ga0209486_11232727	Not Available	514	Open in IMG/M
3300027907\|Ga0207428_10009614	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	8659	Open in IMG/M
3300027907\|Ga0207428_10369879	Not Available	1053	Open in IMG/M
3300027907\|Ga0207428_10457659	Not Available	930	Open in IMG/M
3300030006\|Ga0299907_10572438	Not Available	883	Open in IMG/M
3300030620\|Ga0302046_11338436	Not Available	559	Open in IMG/M
3300031228\|Ga0299914_10187279	All Organisms → Viruses → Predicted Viral	1836	Open in IMG/M
3300031548\|Ga0307408_100971637	Not Available	781	Open in IMG/M
3300031858\|Ga0310892_10185133	All Organisms → cellular organisms → Archaea	1239	Open in IMG/M
3300031903\|Ga0307407_11583351	Not Available	520	Open in IMG/M
3300031908\|Ga0310900_10699405	Not Available	811	Open in IMG/M
3300031911\|Ga0307412_11690379	Not Available	580	Open in IMG/M
3300031944\|Ga0310884_11004788	All Organisms → cellular organisms → Archaea	518	Open in IMG/M
3300032002\|Ga0307416_103516638	Not Available	524	Open in IMG/M
3300032003\|Ga0310897_10217403	Not Available	841	Open in IMG/M
3300032012\|Ga0310902_10032880	Not Available	2404	Open in IMG/M
3300032075\|Ga0310890_10026561	All Organisms → cellular organisms → Archaea	3055	Open in IMG/M
3300032126\|Ga0307415_101669907	Not Available	614	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.68%
Host-Associated	Host-Associated	27.43%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.18%
Plants	Host-Associated → Plants	27.43%
Aquatic	Environmental → Aquatic	11.50%
Built Environment	Engineered → Built Environment	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.16%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.27%
Marine	Environmental → Aquatic → Marine	7.08%
Freshwater	Environmental → Aquatic → Freshwater	2.65%
Sediment	Environmental → Aquatic → Sediment	1.77%
Unclassified	Engineered → Built Environment → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.39%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	7.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.31%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Loam	Environmental → Terrestrial → Soil → Loam	0.89%
Sand	Environmental → Terrestrial → Soil → Sand	0.89%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	16.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	7.08%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.42%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.77%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.89%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.89%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.16%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	14.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	13.27%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	7.08%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.42%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.42%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.65%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.77%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.77%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.89%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.89%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.89%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Clean Room	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Clean Room	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003987	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2	Environmental	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013867	Clean room microbial communities from NASA Spacecraft Assembly Facility at Jet Propulsion Laboratory, Pasadena, California, USA - InSight In5-11 gowning area SPAdes reassembly	Engineered	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025537	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1 (SPAdes)	Environmental	Open in IMG/M
3300025567	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025780	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027691	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_117748042	3300000787	Soil	MYNKQTISSVIKNYYDKYNCKFAFCESCYWFATILADKLNNGNRCYICNKKDIHIGKILI
JGI11643J11755_117765821	3300000787	Soil	MSNKQAIITHKKYYDKHNCKFAFCESCYWVATILINKFNINYCFICKKKNIHTETILI*
JGI11643J11755_117769311	3300000787	Soil	MSNNQTIIIDKNYYDKHNXKFALCESCYWFATILVNKFNINHCYICKKKDIHMETILI*
JGI10213J12805_103340072	3300000858	Soil	MSNNQTIIIDKNYYDKHNCKFALCESCYWFATILVNKFNINHCYICKKKDIHMETIL
JGI11643J12802_112940521	3300000890	Soil	MSNNQTIIIDKNYYDKHNCKFALCESCYWFATILVNKFNINHCYICKKKDIHMETILI*
soilL1_101671692	3300003267	Sugarcane Root And Bulk Soil	MLNVRKMHNKQAYNINKKYYDKYSCKFAFCESCYWFATILVKNKFNNTTHCYKCNKKDIHLETIVVSS*
Ga0055471_100374092	3300003987	Natural And Restored Wetlands	MSNNQIIVSINKKYYDKYNCKFAFCESCYWFATILVENKFNNTKHCYKCKTKDIHIQTIIA*
Ga0055471_101853992	3300003987	Natural And Restored Wetlands	MYNKQVISSTTKNYYNKYNCKFAFCESCSWFATILVDKFNNGNRCYICKKKDIHVETILF
Ga0055466_100533992	3300003997	Natural And Restored Wetlands	MSSKQINTSLNKNYYDKYNCKFAFCESCYWFATILVENKFNNGSNRCYKCNKKGIHIGILLISK*
Ga0055472_100189152	3300003998	Natural And Restored Wetlands	MYNKQTISSVIKNYYDKYNCKFAFCESCYWFATILADKLNNGNRCYICNKKDVHIGKILI
Ga0055465_101936911	3300004013	Natural And Restored Wetlands	MYNKQVISSITKNYYNKYNCKFAFCESCSWFATILVDKFNNGNRCYICKKKDIHVETILF
Ga0062590_1022908001	3300004157	Soil	MYDKQIIININKNYYDKHNCKFAFCESCYWVATILVKKFNNTNRCFNCNKKGILIETILT
Ga0063356_1006791131	3300004463	Arabidopsis Thaliana Rhizosphere	MSNKQTIITHKNYYDKQNCKFAFCESCYWVATILVNKFNINHCFICKKKNIHTETILI*
Ga0062592_1012452432	3300004480	Soil	MYKKQIISSVIKSYYYKHNCKFAFCESCYWFATILVDKFNNTNRCYNCKKKDIHLGTILF
Ga0062594_1002484362	3300005093	Soil	MYKKQIISSVIKSYYYKHNCKFAFCESCYWFATILVDKFNNGNRCYICKKKDIHIGTILF
Ga0070683_1020045481	3300005329	Corn Rhizosphere	MYDKQIIININKHYYDKYNCKFAFCESCYWVATILVNKFNNTNRCSNCNKKGIHIETILT
Ga0070659_1002329751	3300005366	Corn Rhizosphere	MYDKQIIININKNYYDKHNCKFAFCEACYWVTTILVNKFNNTNRCSNCNKKGIHIETILT
Ga0068852_1013550881	3300005616	Corn Rhizosphere	MYDKQIIININKHYYDKHNRKFAFCESCYWVATILVNKFNNTNRCSNCNKKGIHIETILT
Ga0082029_12869321	3300006169	Termite Nest	INKKYYDKNNCKFAFCESCYWFATILVINKFNNNTNRCYKCNKKDLHIGTILI*
Ga0075421_1001315924	3300006845	Populus Rhizosphere	MNDKQSIGSINKNYYDKYNCKFTFCESCYWVATILINKFNTNRCYNCNKKDIYIGTILK*
Ga0075420_1000604513	3300006853	Populus Rhizosphere	MNNKQIISCVTNSYYYKHNCKFAFCESCYWFATILVDKFNNGNRCYICKKKDIHIGTILF
Ga0079217_100466421	3300006876	Agricultural Soil	MSNNQTIIIDKNYYDKHNCKFALCESCYWFATILVNKFNINHCYICKKKDIHMETI
Ga0079217_100500263	3300006876	Agricultural Soil	MKKMSNKQTIISLDKKYYDKYNCKFAFCESCYWIATILVNKFNNINHCYNCNKKDIHIETILI*
Ga0079217_101368392	3300006876	Agricultural Soil	MYDKQIIININKNYYDKHNCKFVFCESCYWFATILVNKFNTNRCSNCNKKGIHIETIVT*
Ga0079217_107949172	3300006876	Agricultural Soil	MSNKQTIININKNYYDKYNCKFAFCESCYWVATILTNKFNNINHCYNCRKKNIHIEKILI
Ga0075429_1000317214	3300006880	Populus Rhizosphere	MSNKQTIIINKNYYDKHNCKFVFCESCYWVATILVNKFNMNHCYICKKKDIHMETILV*
Ga0079215_110522361	3300006894	Agricultural Soil	MSNKQTIININKNYYDKYNCKFAFCESCYWVATILTNKFDNINHCYNCRKKNIHIEKILI
Ga0079216_100802961	3300006918	Agricultural Soil	MSNNQTIIIDKNYYDKHNCKFALCESCYWFATILVNKFNINHCYICKKKDIHMETILF*
Ga0079216_102923841	3300006918	Agricultural Soil	MSNKQTIISLDKKYYDKYNCKFAFCESCYWIATILVNKFNNINHCYNCNKKDIHIETILI
Ga0079216_103272692	3300006918	Agricultural Soil	MSNKHTIININKNYYDKYNCKFAFCESCYWVATILTNKFNNINHCHNCRKKNI
Ga0079216_107054472	3300006918	Agricultural Soil	VSNKQTIISINKKNYYDKYNCKFAFCESCYWFATILVKNKFNNTNHCYICNKKDIHIGTI
Ga0079216_110758451	3300006918	Agricultural Soil	VSNKQTNMSINKKYYDKYNCKFAFCESCYWIATILVKNKFNNNNHCYNCRKKDIHMGKILI*
Ga0079218_105035162	3300007004	Agricultural Soil	VSNKQTNMSINKKYYDKYNCKFAFCESCYWIATILVKNKFNNIKHCYNCNKKDIHIETILI*
Ga0079218_110265732	3300007004	Agricultural Soil	MYDKQIIININKNYYDKHNCKFAFCESCYWVATILVNKFNTNRCSNCNKKGIHIETILT*
Ga0111539_100378165	3300009094	Populus Rhizosphere	MYDKQIKININKNYYEKHNYKFAFCESCYWVATILVNKFNNTNRCSNCNKKKVFI*
Ga0105091_103745831	3300009146	Freshwater Sediment	MSNKQTIITHKNYYDKHNCKFAFCESCYWVATILINKFNINHCYICKKKDIHTDT
Ga0105104_100396093	3300009168	Freshwater Sediment	MSNKQAIITHKNYYDKHNCKFAFCESCYWVATILINKFNINHCFICKKKNIHTETILI*
Ga0105104_100869523	3300009168	Freshwater Sediment	MNDKQSIGSINKNYYDKYNCKFTFCESCYWVATILVNKFNMNRCYNCNKKDIHIGTILR*
Ga0105237_126634971	3300009545	Corn Rhizosphere	MYNKQIIININKNYYDKHNCKFAFCESCYWVATILVNKFDNTNRCSNCNKKGIHIETILT
Ga0126307_100031502	3300009789	Serpentine Soil	MSNKQIIISIDKKYYYDKYNCKFAFCESCYWIATILVKNKINNINHCYNCRKKDIHIETILI*
Ga0126307_100402804	3300009789	Serpentine Soil	VSNKQIIIHKNKKYYDKHNCKFAFCESCYWFATILVKNKFNNNSNQCYKCKKKDIHIGTILVSK*
Ga0126307_101671691	3300009789	Serpentine Soil	LKKMYNNQTISVTKNYYDKHNCKFAFCESCYWFATILINKFNNGNRCYICNKKDIHIGTILI*
Ga0126307_114047691	3300009789	Serpentine Soil	MGLILKKMYNNQTISVTKNYYDKHNCKFAFCESCYWFATILVDKFNNGNRCYICKKKDIHIGTILF*
Ga0126313_100060404	3300009840	Serpentine Soil	MGLILKKMYNNQTISVTKNYYDKHNCKFAFCESCYWFATILVDKFNNGNRCYICNKEDIHIGTILF*
Ga0126315_105152861	3300010038	Serpentine Soil	MGLILKKMYNNQTISVTKNYYDKHNCKFAFCESCYWFATILVDKFNNGNRCYICNKEDIHIGTI*
Ga0126309_103352002	3300010039	Serpentine Soil	MGLILKKMYNNQTISVTKNYYDKHNCKFAFCESCYWFATILVDKFNNGNRCYICNKEDIHIG
Ga0126309_105237711	3300010039	Serpentine Soil	MSNKQTIISIDKNYYDKYNCKFAFCESCYWFATILVKNKFNNINNYYLCNKKDIHIGTILI*
Ga0126308_100022096	3300010040	Serpentine Soil	MSNKQTIISINKKDYYDKYNCKFAFCESCYWFATILVNKFNNINRCYICNKKDIHIGTKLI*
Ga0126308_100192574	3300010040	Serpentine Soil	VSNKEIIIHKNKKYYDKHNCKFAFCESCYWFATILVKNKFNNNSNQCYKCKKKDIHIGTILVSK*
Ga0126308_108194651	3300010040	Serpentine Soil	VVYFAYYTMGLILKKMYNNQTISVTKNYYDKHNCKFAFCESCYWFATILINKFNNGNRCYICNKKDIHIGTILF*
Ga0126312_107736301	3300010041	Serpentine Soil	MSNNQTIIIDKNYYDKHNCKFALCESCYWFATILVNKFNINHCYICKKKDIH
Ga0126314_103641184	3300010042	Serpentine Soil	SIDRKYYDKYNCKFAFCESCYWFATILENKFNNIHNCYRCNKKDIHIGTILI*
Ga0126310_100035551	3300010044	Serpentine Soil	NQTISVTKNYYDKHNCKFAFCESCYWFATILVNKFNNGNRCYICNKKDIHIGTILI*
Ga0126310_100415832	3300010044	Serpentine Soil	MSNKQTIISIDRKYYYDKYNCKFTLCDSCYWFATILVKNKINNINHCYNCRKKDIHIETILI*
Ga0126310_100456935	3300010044	Serpentine Soil	MSNKQTIISINKKDYYDKYNCKFAFCESCYWFATILVNKFNNINRCYICNKKDIHIGT
Ga0105239_115234421	3300010375	Corn Rhizosphere	MYNKQIISSLTKNYYDKYNCKFAFCESCYWFATILADKLNNDNRCSNCKKKDIHIGKILI
Ga0157286_100017362	3300012908	Soil	MYKKQIISIVIKSYYYKHNCKFAFCESCYWFATILVDKFNNTNRCYNCKKKDIHIGTILF
Ga0157301_100214711	3300012911	Soil	KMNDKQSIGSINKNYYDKYNCKFTFCESCYWVATILINKFNTNRCYNCNKKDIYIGTILK
Ga0163162_111112132	3300013306	Switchgrass Rhizosphere	MYNKQIIININKHYYDKHNRKFAFCESCYWVATILVNKFNNTNRCSNCNKKGIHIETILT
Ga0163162_120106831	3300013306	Switchgrass Rhizosphere	MYNKQIIININKNYYDKHNCKFAFCESCYWVATILVNKFNPNRCSNCNKKGIHVETILT*
Ga0181467_1006134	3300013867	Clean Room	MLNVRKMHNKQAYNINKKYYDKCSCKFAFCESCYWFATILVNKFNNINHCDICKKKDIHIETILS*
Ga0075322_10769132	3300014311	Natural And Restored Wetlands	MYDKQIIITIKKNYYDKYDCKFAFCESCYWVATILINKFNTNRCYNCNKKGIYLGTILR*
Ga0132258_104085673	3300015371	Arabidopsis Rhizosphere	MYDKQIQININKNYYEKHNYKFAFCESCYWVATLLVNKFNNTNQCSNCNKKKVFI*
Ga0132258_112521064	3300015371	Arabidopsis Rhizosphere	MYDRQIIININKHYYDKYNCKFAFCESCYWVATILVNKFNNTNRCSNCNKK
Ga0132258_121613742	3300015371	Arabidopsis Rhizosphere	MSNKQTIITHKNYYDKHNCKFAFCESCYWVATILVNKFNINHCFICKKKNVHTETILI*
Ga0132258_132821182	3300015371	Arabidopsis Rhizosphere	MYNKQIISNVTKNYYDKYNCKFAFCESCYWFATILADKLNNDNRCYICNKKDIHIGKILI
Ga0132256_1021404011	3300015372	Arabidopsis Rhizosphere	MHNKLTINIIIKNYYDKYNCKFAFCESCYWFATILADKLNNSNRCYNCNKKDIHIGKILI
Ga0132255_1001413944	3300015374	Arabidopsis Rhizosphere	MYDKQIQININKNYYEKHNYKFAFCESCYWVATILVNKFNNTNRCYNCNKKDIYIGTILK
Ga0132255_1001940171	3300015374	Arabidopsis Rhizosphere	ININKNYYEKHNYKFAFCESCYWVATLLVNKFNNTNQCSNCNKKKVFI*
Ga0163161_114387692	3300017792	Switchgrass Rhizosphere	MYDKQIIININKNYYDKHNCKFAFCESCYWVATILVNKFNNTNRCSNCKKKGIHI
Ga0184611_10157693	3300018067	Groundwater Sediment	MSNKQTVITHKNFYDKHNCKFVFCESCYWVATILINKFNINNCFICKKKNIHTETILI
Ga0184624_101548162	3300018073	Groundwater Sediment	MSNNQTIIIDKNYYDKHNCKFALCESCYWFATILVNKFNINHCYICKKKDIHMETILF
Ga0190275_101545882	3300018432	Soil	MSNKLTIITHKNYYDKHNCKFAFCESCYWVATILINKFNINHCYICKKKDIHTETILI
Ga0190275_102430132	3300018432	Soil	MYDKQTFGILNKNYYDKYDCKFTFCESCYWVATILVNKFNMNRCYNCNKKGIHIGTILR
Ga0190275_118359201	3300018432	Soil	IGVDIKKMSNKQTIISITKKNNYDKYNCKFAFCESCYWIATILVKNKFNNTNHCYNCNKKDIHIETILI
Ga0190269_109032452	3300018465	Soil	MYDKQIIININKNYYDKHNCKFAFCESCYWVATILVNKFNTNRCSNCNKKGIHIETILT
Ga0190268_100885181	3300018466	Soil	MSNNQTIIIDKNYYDKHNCKFALCESCYWFATILVNKFNINHCYICKKKDIHMETILI
Ga0190274_103434612	3300018476	Soil	MSNKLTIITHKNYYDKHNCKFAFCESCYWVATILINKFNINRCSNCNKKGIHVETILT
Ga0190271_101824981	3300018481	Soil	MYNKQIISSVTKNYYDKYNCKFAFCESCYWFATILADKLNNDNRCYICNKKDIHIGKILI
Ga0190271_105103562	3300018481	Soil	MSNKQTIITHKNYYDKQNCKFAFCESCYWVATILVNKFNINHCFICKK
Ga0190271_117973451	3300018481	Soil	MSNNQTIIIDKNYYDKHNCKFALCESCYWFATILVNKFNINHCYICKKKDIHIETILI
Ga0173481_100020665	3300019356	Soil	MYKKQIISSVIKSYYYKHNCKFAFCESCYWFATILVDKFNNTNRCYNCKKKDIHIGTILF
Ga0190267_101377401	3300019767	Soil	MSNNQTIIIDKNYYDKHNCKFALCESCYWFATILVNKFNINHCYICKKKDIHTETILI
Ga0196962_100840431	3300024430	Soil	VSSKQIITSINKNYYDKYNCKFAFCESCYWFATILVENKFNNNSNQCYKCNKKDIHIGTILI
Ga0209109_105743051	3300025160	Soil	IRMSNNQTIFINKNYYDKHNCKFAFCESCYWFATILVNKINFNHCYICKKKDIHMETILI
Ga0210061_10660211	3300025537	Natural And Restored Wetlands	VSNKQTIISIDKNNYYNKYDCKFAFCESCYWFATILLKNKFNNNTNRCYNCNKKDIHIGTILI
Ga0210076_10010163	3300025567	Natural And Restored Wetlands	MANKQTVSITKNYYDKYNCKFAFCESCNWFATILINKFNINHCYNCKKKDIHMKTILI
Ga0210100_10078421	3300025780	Natural And Restored Wetlands	MSNKLTIMTNKNYYDKHNCKFAFCESCYWVATILINKFNINHCYICNKKDIHT
Ga0207688_108880541	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MYNKQIIININKNYYDKHNCKFAFCEACYWVTTILVNKFNNTNRCSNCKKKGIHIETILT
Ga0207647_104146461	3300025904	Corn Rhizosphere	MYDKQIIININKNYYDKHNCKFAFCESCYWVATILVNKFNNTNRCSNCNKKGIHIETILT
Ga0207704_108768462	3300025938	Miscanthus Rhizosphere	MYDKQIIININKNYYDKHNCKFTFCESCYWVATILVNKFNNTNRCSNCNKKGIHIETILT
Ga0256866_11800651	3300027650	Soil	KNNYDKYNCKFAFCESCYWIATILVKNKFNNTNHCYNCNKKDIHIETILI
Ga0209485_11802352	3300027691	Agricultural Soil	MKKMSNKQTIISLDKKYYDKYNCKFAFCESCYWIATILVNKFNNINHCYNCNKKDIHIETILI
Ga0209485_12300231	3300027691	Agricultural Soil	VSNKQTNMSINKKYYDKYNCKFAFCESCYWIATILVKNKFNNNNHCYNCRKKDIHMGKIL
Ga0209998_101635721	3300027717	Arabidopsis Thaliana Rhizosphere	NIKMSNKQTIIINKNYYDKHNCKFVFCESCYWVATILVNKFNMNHCYICKKKDIHMETIL
Ga0209486_112327271	3300027886	Agricultural Soil	MSNKQTIISITKKNYYDKYNCKFAFCESCYWFATILIKNKFNNIKHCYNCNKKDIHIETILI
Ga0207428_100096147	3300027907	Populus Rhizosphere	MSNKQTIIINKNYYDKHNCKFVFCESCYWVATILVNKFNMNHCYICKKKDIHMETILV
Ga0207428_103698791	3300027907	Populus Rhizosphere	MYDKQIIININKHYYDKHNRKFAFCESCYWVATILVNKFNNTNRCSNCNKKGI
Ga0207428_104576591	3300027907	Populus Rhizosphere	YYKMYNKQIISSVIKSYYHKHNCKFAFCESCYWFATILVDKFNNGNRCYICKKKDIHIGTILF
Ga0299907_105724381	3300030006	Soil	MSNKQTIISITKKNYYDKYNCKFAFCESCYWLATILVKNKFNNANHCYNCNKKDIHIETILI
Ga0302046_113384361	3300030620	Soil	LKMSNNQTIFINKNYYDKHNCKFAFCESCYWFATILVNKINFNHCYICKKKDIHMETILI
Ga0299914_101872792	3300031228	Soil	MSNKQTIISITKKNNYDKYNCKFAFCESCYWIATILVKNKFNNTNHCYNCNKKDIHIETILI
Ga0307408_1009716372	3300031548	Rhizosphere	MGLILKKMYNNQTISVTKNYYDKHNCKFAFCESCYWFATILVNKFNNGNRCYICNKKDIHIGTILI
Ga0310892_101851331	3300031858	Soil	MSNKQTISITKNYYDKYNCKFAFCESCCWFATILINKFNINHCYNCKKKDIHMQTVLI
Ga0307407_115833511	3300031903	Rhizosphere	MGLILKKMYNNQTISVTKNYYDKHNCKFAFCESCYWFATILINKFNNGNRCYICNKKDIHIGTILF
Ga0310900_106994051	3300031908	Soil	MSNKQTIITHKNYYDKHNCKFAFCESCYWVATILVNKFNINHCFICKKKNIHTETILI
Ga0307412_116903791	3300031911	Rhizosphere	NNQTISVTKNYYDKHNCKFAFCESCYWFATILINKFNNGNRCYICNKKDIHIGTILI
Ga0310884_110047882	3300031944	Soil	MSNKQTISITKNYYDKYNCKFAFCESCCWFATILINKFNINHCYNCKKKD
Ga0307416_1035166382	3300032002	Rhizosphere	MSNKLAIITHKNYYDKHNCKFAFCESCYWVATILINKFNTNRCYNCNKKDI
Ga0310897_102174032	3300032003	Soil	SNKQTISITKNYYDKYNCKFAFCESCCWFATILINKFNINHCYNCKKKDIHMQTVLI
Ga0310902_100328803	3300032012	Soil	MSNKQTISITKNYYDKYNCKFAFCESCFWFVTILINKFNINHCYNCKKKDIHMQTVLI
Ga0310890_100265612	3300032075	Soil	MYEKQPIGSINKKYYDKYNCKFTFCESCYWVATILVNKFNMNRCYNCNKKDIHIGTILR
Ga0307415_1016699071	3300032126	Rhizosphere	TMGLILKKMYNNQTISVTKNYYDKHNCKFAFCESCYWFATILVNKFNNGNRCYICNKKDIHIGTILI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083218

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences