3300012980: Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCW15

Overview

Basic Information

• IMG/M Taxon OID: 3300012980
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0127468 | Gp0194004 | Ga0168315
• Sample Name: Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DCW15
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Minnesota - Twin Cities
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 45382623
• Sequencing Scaffolds: 47
• Novel Protein Genes: 55
• Associated Families: 54

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	9
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
Not Available	15
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings → Weathered Mine Tailings Microbial Communities From Hibbing, Minnesota, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → mine → mine tailing
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: Hibbing, MN, USA
• Coordinates
  • Lat. (^o): 47.432362
  • Long. (^o): -92.940835
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F000151	Metagenome / Metatranscriptome	1897	Y
F000231	Metagenome / Metatranscriptome	1516	Y
F000702	Metagenome / Metatranscriptome	929	Y
F000975	Metagenome / Metatranscriptome	816	Y
F001083	Metagenome / Metatranscriptome	783	Y
F001462	Metagenome / Metatranscriptome	690	Y
F001596	Metagenome / Metatranscriptome	666	Y
F001643	Metagenome / Metatranscriptome	659	Y
F002319	Metagenome / Metatranscriptome	571	Y
F002436	Metagenome / Metatranscriptome	559	Y
F003300	Metagenome	495	Y
F004823	Metagenome / Metatranscriptome	422	Y
F005465	Metagenome / Metatranscriptome	400	Y
F005939	Metagenome	386	Y
F006156	Metagenome / Metatranscriptome	380	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006443	Metagenome / Metatranscriptome	373	Y
F007158	Metagenome / Metatranscriptome	356	Y
F007372	Metagenome / Metatranscriptome	352	N
F007788	Metagenome / Metatranscriptome	345	Y
F008377	Metagenome / Metatranscriptome	334	Y
F008644	Metagenome / Metatranscriptome	330	Y
F010187	Metagenome / Metatranscriptome	307	Y
F010557	Metagenome / Metatranscriptome	302	Y
F013141	Metagenome / Metatranscriptome	274	Y
F014080	Metagenome / Metatranscriptome	266	Y
F014420	Metagenome / Metatranscriptome	263	Y
F015244	Metagenome / Metatranscriptome	256	Y
F015647	Metagenome / Metatranscriptome	253	Y
F022733	Metagenome / Metatranscriptome	213	Y
F023401	Metagenome / Metatranscriptome	210	Y
F023929	Metagenome / Metatranscriptome	208	Y
F025870	Metagenome / Metatranscriptome	200	Y
F026443	Metagenome	198	Y
F026622	Metagenome / Metatranscriptome	197	Y
F030867	Metagenome / Metatranscriptome	184	Y
F031237	Metagenome / Metatranscriptome	183	Y
F034659	Metagenome / Metatranscriptome	174	Y
F036905	Metagenome / Metatranscriptome	169	Y
F042590	Metagenome	158	Y
F044092	Metagenome / Metatranscriptome	155	Y
F046540	Metagenome	151	Y
F050641	Metagenome / Metatranscriptome	145	Y
F053654	Metagenome	141	Y
F056812	Metagenome / Metatranscriptome	137	Y
F063783	Metagenome / Metatranscriptome	129	Y
F071443	Metagenome / Metatranscriptome	122	Y
F071602	Metagenome / Metatranscriptome	122	Y
F075107	Metagenome / Metatranscriptome	119	Y
F083105	Metagenome / Metatranscriptome	113	Y
F083186	Metagenome / Metatranscriptome	113	N
F095831	Metagenome / Metatranscriptome	105	Y
F103958	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0168315_100661	All Organisms → cellular organisms → Bacteria	5337
Ga0168315_101445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2716
Ga0168315_101644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2519
Ga0168315_101690	All Organisms → cellular organisms → Bacteria → Acidobacteria	2482
Ga0168315_103233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1741
Ga0168315_103588	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1641
Ga0168315_104445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1464
Ga0168315_104474	All Organisms → cellular organisms → Bacteria	1459
Ga0168315_104694	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1427
Ga0168315_105188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1354
Ga0168315_105606	All Organisms → cellular organisms → Bacteria	1298
Ga0168315_106166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1234
Ga0168315_106482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1199
Ga0168315_107064	All Organisms → cellular organisms → Bacteria	1142
Ga0168315_107352	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1117
Ga0168315_107578	All Organisms → cellular organisms → Bacteria	1097
Ga0168315_107633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093
Ga0168315_107737	All Organisms → cellular organisms → Bacteria → Acidobacteria	1084
Ga0168315_108648	All Organisms → cellular organisms → Bacteria → Acidobacteria	1017
Ga0168315_108730	All Organisms → cellular organisms → Bacteria → Acidobacteria	1010
Ga0168315_108789	All Organisms → cellular organisms → Bacteria	1006
Ga0168315_109481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	962
Ga0168315_110421	Not Available	911
Ga0168315_111381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	865
Ga0168315_111897	Not Available	842
Ga0168315_111902	All Organisms → cellular organisms → Bacteria	842
Ga0168315_112655	Not Available	810
Ga0168315_113472	All Organisms → cellular organisms → Bacteria	781
Ga0168315_114518	Not Available	749
Ga0168315_117397	All Organisms → cellular organisms → Bacteria → Acidobacteria	672
Ga0168315_117536	All Organisms → cellular organisms → Bacteria → Acidobacteria	669
Ga0168315_118209	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653
Ga0168315_118259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652
Ga0168315_118959	Not Available	637
Ga0168315_119824	Not Available	620
Ga0168315_120366	All Organisms → cellular organisms → Bacteria → Acidobacteria	610
Ga0168315_121698	Not Available	588
Ga0168315_121715	Not Available	588
Ga0168315_122100	Not Available	582
Ga0168315_123615	All Organisms → cellular organisms → Bacteria	558
Ga0168315_123652	Not Available	558
Ga0168315_123710	Not Available	557
Ga0168315_124125	Not Available	551
Ga0168315_124494	Not Available	546
Ga0168315_124520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	546
Ga0168315_126309	Not Available	523
Ga0168315_127112	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0168315_100661	Ga0168315_1006616	F003300	MDGVDDEFRARVRDVLKRSGRSMRGLSAALGRDPGYVAALLDPSRPSRARPTPADLLRASDATGISFVELLEILWGIEPHRLADELVGLGVARSSDPRLDRLTDTERALVGDFIDFLAARHAPGSGRRPRTPWPALDHGA*
Ga0168315_101445	Ga0168315_1014453	F008377	MNEAEAQPWYQLYTSAIAELDPKRLIERVEATEAAIHGRLQDLQYDSDHHEERQRMADAQRTLAFLRRCF*
Ga0168315_101445	Ga0168315_1014457	F023929	LRLECKFWLEDDGWNAIIESLGITVHADSFETAKTDMELALGKHIESLLREHGAVGRGRAA*
Ga0168315_101445	Ga0168315_1014458	F083105	MAIFDEPYIVVDVESQRLTLQGMLSGEVITIVNTAPDSPLTQEDYPRGQLVALTDPSTALLN*
Ga0168315_101644	Ga0168315_1016442	F002436	VGLYNSRDRRPVAVVVTADGRRVHVPLTDASLVDVSFFGPLRSLLLGLDGLLGLITGSRRENGGSRRTER*
Ga0168315_101690	Ga0168315_1016902	F014420	MGESAETFRNWRGLYKAALFETDTGKIPSRIEEARKALVFRSRELFETSPNYDGETEAIETALYALQALENCLRSNTKDRRRAPRLA*
Ga0168315_103233	Ga0168315_1032333	F053654	MTNFETLTQAAIRVDEAERSVRIAAIRLNSLVVGVPLRYGVEATRRLRAADAELEAARVAYDAAQDLPAPED*
Ga0168315_103588	Ga0168315_1035884	F025870	MTATQIHLCERLKQLGFSRQSQIRLYGSQFELVGDPLVISEDVVLVDAVERKSGESCRVRIPLNIVKMATE
Ga0168315_104445	Ga0168315_1044452	F001596	MSWFHSSTAAVDARNYASPAEIVACFQDERNVLGRLAFLITGEQATADQSVINACEISLKGNSPFRDWLLEWAKTATISSAISRRAEAIRSYGAAYVDRRCTHVEHFSGGDVDERESSLARILRTDPWALIAELDPLCRAILVLRLAMRSSIQECVLRLNVSRAVVLGANCHAMTWLEERHVKAEEENHDASYAV*
Ga0168315_104445	Ga0168315_1044453	F006278	MFRAEIQWLANGPTLKLEGKLVADWAEQARFLVTKDVLPKGLIVDLTEVSYIDSVGEQLLKWLASVGAVFVAGNVYAIAICDRLSLSPVQKISERPKRRHGNYEKRSSIRHSHPVEAI*
Ga0168315_104474	Ga0168315_1044742	F008644	AILQQSAFNVGATTAGLAASGTTPAQGPFNVPGEGPGCSKALNSAAFAPCIFAPNGMTNATFTDSKGNSHFYSGYNYADLILNNQFDTGLRRLPINLLLELEDNLDAETHPLDSKGKVLKALGSQNKEYGVDFSLGQVKNKGDVQVGYAWLRQEQDSVIASFAESDQRAPTNILQNRFYALWRVRANTVGSFTWWHGRTLNTALENATKPTATAAGQQEPYLNRLQFDLIYTF*
Ga0168315_104694	Ga0168315_1046942	F071443	MVGIFFSLLVVMALLSICGEIVMRVRLTRRALRDKIAWWRRGGDEVASTYEEVFPDSYLPFLRRFVFWLVVTCAGALLVSMLLRTSN*
Ga0168315_105188	Ga0168315_1051882	F002319	MTSQIVSLQVTASIPIGCDFWSEDDGWKGLCRCASVTVSGNSFEDAKKNMAIELQVQIERILREHPEGSVRHIA*
Ga0168315_105606	Ga0168315_1056063	F063783	MTWADFYLVCFVIGFCFSLLSFLTGGLRWHLHMPHLPHGTA
Ga0168315_105608	Ga0168315_1056082	F000231	MTVSSSMAGSFYRCAGPNCGVLKGKTDHWWLMWTSFGELDVPVLYLCPWDETIARKEGTLHVCGELCAQKLQSQFLGNVRENLLKRSTNG*
Ga0168315_106166	Ga0168315_1061663	F000702	MGKVLRGYAKGKDGKLILRGTMPILHCKDKPNPSERRDKRHLVRQGATIFKKEAVD*
Ga0168315_106482	Ga0168315_1064821	F001083	MLFTVEFVMNMNERQIAISVLEGLREDLAYARLNNGSRVLDVADLRRYIYEQIGRIRTHAYVTEALYGNSDGYGQDIIQSTGNNGKAHP*
Ga0168315_107064	Ga0168315_1070642	F010557	VNKDRTNLNTALENYLKSGRQFGDGEKFYLLGFEAALHARNRCKEFDQIASEMTSDLEELQQQYPRVAVEEPFTRGFQQGREYYQRLCDESTVS*
Ga0168315_107352	Ga0168315_1073521	F006156	MKQIKCTALLSMLALLFPLGALARDKNQHSVVIPDSVQVGGAQLKPGNYKVAWQGTGPEVQVNFVRDGKTVATVPGTLKTNEAHAADDLVTDTTSANAKTLKEIDFSRDKESLIFDQNGM
Ga0168315_107578	Ga0168315_1075782	F000975	MESRIKSRQFKKINRRELLKLAPVVALGAFAVPKLQESLLKKGLGFSDWASAKLFRTGHLATTLSDSELTPFDRFPIN
Ga0168315_107633	Ga0168315_1076331	F103958	VTKPALNSRVQSLVTEYGVFWQFWPQFEQTHGERRLVGFEVELIGSHTSDLNHV
Ga0168315_107633	Ga0168315_1076334	F004823	MYATKAINGVPAIQRDGQSVLGVCDQNWEFANWLCALLNELGRKSELLLNEHEQEWLNANDHAFRRTAQHA*
Ga0168315_107737	Ga0168315_1077372	F034659	MEYFKGILSGVAAMLLAEFIPGSWSAFRGVFEQKATGLGAVAGGLTGSIFSPQFWLLAILFFALFFSASRLGNKLLRVFLFWIPTLLVSTLGIAIAALFTYAFSRMSHHSG*
Ga0168315_108073	Ga0168315_1080732	F000151	MPNSGDPHVQEVVKAAHEELRQLMKQRAEIMKRIGTVKQTIVGLANLFGDEILTEELLELVDRKSNGRQPGFTKACRLVLMESPRPLGAREVCEQIQQKIPPVLLRHKDPLASVTTVLNRLVDYGEARSVVKDNGRRAWQWVADPAESLDANTSGSAGIVS*
Ga0168315_108222	Ga0168315_1082222	F000065	MTQITNKPIPKLHKAPQPPLSYPGATPDSDRARKPRLDEPSATDQELNPGDRVEGLGNFGRPTGEFGTVQQANEDDAVVKWDDDGRMRVHQPWLKKL*
Ga0168315_108648	Ga0168315_1086481	F013141	QTAHRPYWARSASATFDNYGSTIGSDAGINLFHEFGPGIRQMVKGHTPKLVSRIEERITHDQNSSFRPQK*
Ga0168315_108730	Ga0168315_1087301	F006443	MSWVVKLEDDLGEHGEWVMLHGVIPSHDERDFPYLRSIDPFGKTVFNHLQAETFLEEWERVKDRAKDDSQ
Ga0168315_108789	Ga0168315_1087891	F001462	YKTTSFNSLDDLKAFKRVGALLLMASKPNLRTPAPGYTIY*
Ga0168315_109004	Ga0168315_1090042	F022733	ERPPDATGDTVNSAVIITAESASSYPGLKTAADYFGPLTELTTRKGFRVVSEPYTFASGAKQLVRGDFSKQLGSLTMQQSSLVLVEKSYVVSFTFIAGNDDEINSLSENLTFGAARSPEATKIPARK*
Ga0168315_109481	Ga0168315_1094811	F071602	RRAATTLNPSSQSTTATLTTPVVLDKTSALGQAVVACTQNAADQETFVLPGPKGEITLDRCYKGRAHLLCVFDALGTEAASLTKSYTKIVEAKYPELTSVEGICKISPETLATDIAGSEDFAKRFRELKSQYDAATKCAANVEQTFKDISLADMTQASEVLQSMTASMDSDVAKIAKVQEQIADLSTKMDLSNRAMKQLTKIHHAVCIRTEKSAN*
Ga0168315_110421	Ga0168315_1104211	F015647	MGEAGTITNEELAILCDIVSGWSMKWAENLSADKRVALDHLIAGGFVEPKDELSFTKYQHTAKTELLFAQLCVGISGG*
Ga0168315_111381	Ga0168315_1113811	F036905	NGTPAVAGVSVAGGSTINLPSFGASSNDPNLPGRSSTGGDRRALDITVVGTSRSGGAFNYYGALKGDKVYTKYINTGAGPAVMQFADPTSANHSYTEELTAPEPMRVELPSGLHKSRLVLACILDRSGQLRNVRVLEKGGPEMTNKILASLPNWKFQPALRGSQPIEVNAILGFNIDTR*
Ga0168315_111897	Ga0168315_1118972	F007788	VSRERPQIVVIRQGGDHGCLITILLLIVAWPLAIVYWILRLVVWVLGVTVDWLTGGPWRRRRG*
Ga0168315_111902	Ga0168315_1119023	F015244	VGWVMDAIYNYIIDSMNWRIALNVAGFAVWLALGLALLRVAGA*
Ga0168315_112655	Ga0168315_1126551	F007158	TVQRSQLAQTSRRTFRLSKRLTASLLSALYTFWGSQNGGLTPFAFYDPFDVASSQQIGSNYDPTGNNTQGRVTVVFRGNWAQATDVARTNMQGLELVEVA*
Ga0168315_113472	Ga0168315_1134721	F030867	MNDTLRAQIETYLGQLNDLIRRGCQVHDMLAADPSDISAVIATRAWQQDCGVTV
Ga0168315_114518	Ga0168315_1145181	F005465	MDQFVRSQNIERYRRLLERVTDESDRQQIINLLAEERQKQKNAGDSV*
Ga0168315_117397	Ga0168315_1173972	F023401	MAEKAATLHQPVISIRISEELRSRLESLKEVISLKTGQTVSTSEAAKQLLESARDDRLELANLLTEPTDSLLKIRGKAEAKLPLSLAEWTLVAYYCAR
Ga0168315_117536	Ga0168315_1175361	F056812	SQSGVLIHAPDGLPLNALVEMVFEMPEEISGQKNSSVLCQGRITRSKEARKTEDGLSLAATILDYKFLHQN*
Ga0168315_118209	Ga0168315_1182091	F031237	HFLFQRLGARDRNLGPADLGTNGPWGRYTVIGVRKYFGKRRE*
Ga0168315_118259	Ga0168315_1182591	F010187	MHPEDLLKPDLFSEMVLLGSGGLIFISVLLIVVSALTRA*
Ga0168315_118959	Ga0168315_1189591	F083186	MEIETMSPKVLLVLIAGLVLGTTVAASAQTQTYPSHLLTPVVERGMPYYYWTDPYYGTPFENVAPYTAGRMPDPYAGTVYDGIAPY*
Ga0168315_119824	Ga0168315_1198241	F095831	AAMPRLPPAIGYGIDAVLILVPLLGMTYFLFNPAAFNAFLAWLVRVL*
Ga0168315_120366	Ga0168315_1203662	F042590	SRVEFVWQGTRVPASLSALGAECHVTGDTVRAIVPEERQDATIDALRREGLRLVSVIPVRTSLEDYFVEKLKPTEKMAGATV*
Ga0168315_121698	Ga0168315_1216981	F046540	MSAKHRAKESAAWTRELNVILLDGIEDNRQGRALAHERVKALHPLPQGKDRYSKDFEKWLTKVFEKPSEDVAPWLSLEFWQHE
Ga0168315_121715	Ga0168315_1217151	F026443	MSYGPLRRWRAAARSSIVGGRDGPPRRTFRFTDIERGWLVRDSDDAPLGTVVSSSEILLTVSRGLLSSKLYLPPSAVAEVHEGVIRLNVTTRWVEAQGWDRAGSRRQQ*
Ga0168315_122100	Ga0168315_1221002	F005939	RVKAHPFLTLMAVVSAILILVGRVNHDLWWGDWAFVAGIAVVVVAGVLFLLETRK*
Ga0168315_123615	Ga0168315_1236151	F044092	AVGCRAMSQPFRLIAAKGMQNGVFRLWYGEADNDRSAFVLTLTPQYVAHALCKALPLTLEEIEEYAQQNGDRLRTIAHDARACGQNAKVLD*
Ga0168315_123652	Ga0168315_1236522	F000702	MFLPSGNTMRKVLRGYARDENGTLILIGSIPVPISKDKCSPVARRERRRLIRQGATIFKK
Ga0168315_123710	Ga0168315_1237101	F075107	MKGLKGLVAATLIGLTIAATVSTSASAFQCLARSTNGVAVWGYGIFFSRATHFALRHCRVAGGVGCHIAFCR*
Ga0168315_124125	Ga0168315_1241251	F026622	SLVYDETTLASVMRQTASNTVAVVLAELRRRPIIHPEWLSLQDAAIYTGYSEQQFSEFVKRGIAPPSVLFSRNARRFKRSDVDAWCAAGGPSKFLRQE*
Ga0168315_124494	Ga0168315_1244942	F001643	MLGELMNIPTDTLIDMLYIILAGAFSITANDAVEIEQIQRELQRRGEQQCWSFQAVN*
Ga0168315_124520	Ga0168315_1245202	F050641	GSLPRLHLKPGLSTMPLFIYHCPITGHRVQGFSAEDTSEDRHTYEPVTCPACHQVHHVNPATGAVLGEKVEVRR*
Ga0168315_126309	Ga0168315_1263091	F014080	LKFVTDQRAWNVDNPETLKGQEGHYVQAKAYIYPDKDSIHITEVKMPNASARAREA*
Ga0168315_127112	Ga0168315_1271122	F007372	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIVLLEILLGLFFIGCALAARARLRIQARSQVKEGPEGSTNAKAKWFDRYNVLMILTVIVIYSSMSGLLRHAGLSEGTVGILP