Sample 3300011314

Basic Information
IMG/M Taxon OID	3300011314 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114292 \| Gp0125895 \| Ga0138382
Sample Name	Marine microbial communities from the Southern Atlantic ocean - KN S15 Bottom_A metaT (Metagenome Metatranscriptome) (version 2)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Sample Name

Marine microbial communities from the Southern Atlantic ocean - KN S15 Bottom_A metaT (Metagenome Metatranscriptome) (version 2)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	92198004
Sequencing Scaffolds	27
Novel Protein Genes	31
Associated Families	28

Dataset Contents

Total Genome Size

92198004

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	19
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	2
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium

All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2

Ecosystem Assignment (GOLD)
Name	Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Ecosystem Assignment (GOLD)

Name

Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Type

Environmental

Taxonomy

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine biome → marine water body → sea water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Southern Atlantic Ocean
Coordinates	Lat. (^o)	-28.2362	Long. (^o)	-38.4949	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Southern Atlantic Ocean

Coordinates

Lat. (^o)

-28.2362

Long. (^o)

-38.4949

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000007	Metagenome / Metatranscriptome	8691	Y
F000060	Metagenome / Metatranscriptome	2944	Y
F001625	Metagenome / Metatranscriptome	661	Y
F003733	Metagenome / Metatranscriptome	471	Y
F006321	Metagenome / Metatranscriptome	376	Y
F006550	Metagenome / Metatranscriptome	370	N
F006551	Metagenome / Metatranscriptome	370	Y
F012639	Metagenome / Metatranscriptome	279	Y
F025846	Metagenome / Metatranscriptome	200	Y
F025971	Metagenome / Metatranscriptome	199	Y
F027996	Metagenome / Metatranscriptome	193	Y
F030135	Metagenome / Metatranscriptome	186	Y
F030349	Metatranscriptome	185	Y
F030551	Metagenome / Metatranscriptome	185	Y
F040684	Metagenome / Metatranscriptome	161	N
F041257	Metagenome / Metatranscriptome	160	N
F050311	Metagenome / Metatranscriptome	145	Y
F052865	Metagenome / Metatranscriptome	142	Y
F054097	Metagenome / Metatranscriptome	140	Y
F058220	Metagenome / Metatranscriptome	135	N
F060086	Metagenome / Metatranscriptome	133	Y
F063612	Metatranscriptome	129	Y
F065861	Metagenome / Metatranscriptome	127	Y
F074980	Metagenome / Metatranscriptome	119	N
F088935	Metagenome / Metatranscriptome	109	N
F090441	Metatranscriptome	108	N
F093997	Metagenome / Metatranscriptome	106	N
F105006	Metatranscriptome	100	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0138382_1004109	Not Available	608	Open in IMG/M
Ga0138382_1009932	Not Available	683	Open in IMG/M
Ga0138382_1013571	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
Ga0138382_1016256	Not Available	595	Open in IMG/M
Ga0138382_1017674	Not Available	1011	Open in IMG/M
Ga0138382_1017781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	708	Open in IMG/M
Ga0138382_1032432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → unclassified Pelagibacterales → Pelagibacterales bacterium	527	Open in IMG/M
Ga0138382_1033830	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161	861	Open in IMG/M
Ga0138382_1047812	Not Available	522	Open in IMG/M
Ga0138382_1049279	Not Available	731	Open in IMG/M
Ga0138382_1051833	Not Available	930	Open in IMG/M
Ga0138382_1054260	Not Available	630	Open in IMG/M
Ga0138382_1090741	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	589	Open in IMG/M
Ga0138382_1091684	All Organisms → Viruses → Predicted Viral	1456	Open in IMG/M
Ga0138382_1102135	Not Available	728	Open in IMG/M
Ga0138382_1102985	All Organisms → Viruses → Predicted Viral	2254	Open in IMG/M
Ga0138382_1107799	Not Available	530	Open in IMG/M
Ga0138382_1109179	Not Available	663	Open in IMG/M
Ga0138382_1111900	Not Available	603	Open in IMG/M
Ga0138382_1124642	Not Available	532	Open in IMG/M
Ga0138382_1125167	Not Available	877	Open in IMG/M
Ga0138382_1126358	Not Available	507	Open in IMG/M
Ga0138382_1134108	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium PRS2	502	Open in IMG/M
Ga0138382_1145285	Not Available	1004	Open in IMG/M
Ga0138382_1147581	Not Available	531	Open in IMG/M
Ga0138382_1152277	Not Available	562	Open in IMG/M
Ga0138382_1166006	Not Available	796	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0138382_1004109	Ga0138382_10041091	F006551	RDGNSGEFDCTVESASGTIGTDGVLTDDILRTFLRKIRIAAGKDPNVFLGSHEVYSEIQGLYMPSVRIPNPYGEALVQIDVNGIQTFKGTGVGIHVDSIYGIPFIPSKDAPSNSSDSSEIGRLFALDTSDAEGYGYPRIGISVAIPTEYYEATRRTPAYPFVNNAFVEKGVFRTMGETVCRHFKSQGKIRDIKL*
Ga0138382_1009932	Ga0138382_10099322	F088935	MQVVRTNVMCLAIAATGLANSTTVPKYILNTYKEALKGTVIEPDFLFIYEVADMTGSGFTTAAVANSLFNQDNSGDGTADVTALEVNGVLRAIAQCPLAVNSAFADTTAVHAAEGAAHTAHNYYDINGNLALESVISLSAFALD
Ga0138382_1013571	Ga0138382_10135712	F025846	MFLVTVPMVNLTVAMDLVYMVHGHVTVMVTVLTAQMKQIVLLHHVKTKVYGIVAMANVFQHHMYVMAQVNSVTQAGLQTVPM
Ga0138382_1016256	Ga0138382_10162561	F030551	MKNSIRNLIITAALVTGMFGIVNAQTEVSGEFSSDVTVGDATAFSTPYTGLSISGDGWELSTNLSDGDVIVEEAKYNWAISDAITATFGSQAEPYGIAWGSHRPSGNSFVSAPRDHSISSGVGISTSAYGVGASAFYGDDNYWAARASYDVSA
Ga0138382_1017674	Ga0138382_10176741	F052865	MSLKGYTSFVKKHMDLRNLGIVVLGLGLPSIAGWMTSTGVGSRVMSYVNMVPGMTTNVGKAVGAVALTAGVSYLAATWGIISATEALTANMIALGLVSVGVLQTMSLPVGGNFVSALPSAGISGLGASSYGYIGNYHGEGVG
Ga0138382_1017781	Ga0138382_10177811	F003733	MKALRTKICAYAIALLASIGFATSTLAGSSDFSGIFIAGHAELNVVAIDGTSRTGAGNDGSTGANSGGSDNIEVTSGTIGGFAPTAGWEIGFNLPLGDTFFVTLGFADGGGKTAAIAKSKSPDGNSDVTIHASNPSWYYIAPSISVFDNSAVYFKIGQSHANLKAIGDVTGVLSGIDGDMFGIGTTSIASNGLFIKTEAGAIQ
Ga0138382_1032432	Ga0138382_10324321	F050311	MKALRTKFCAYAIDLLASIGFATPTLAGSSDFSGIFIAGHAELNVVAIDGTHTDGQTHATDQLGVTQGTIGGFAPTGGLEIGFNLPLGDTFFVTLGYADGGGKSAAIARSKSPDGNSDVTIHASNPSWYYIAPSISVFDNSAVYFKIG
Ga0138382_1033830	Ga0138382_10338303	F025846	VNLTVVPMVVHMVSASMAHGHVMVQQTAMTDQMKPIVAILHHVKTKVCGIVAMASVFQHHMYVMAQVNSVTQDGLLTVPMVQMKA*
Ga0138382_1040812	Ga0138382_10408122	F058220	GIHPYGMRHGEPWHPNQPLVDALLETEHPVFVWSGGGAWYAEIIAGKLGLDFPCLDKDEITFELIQEGDVVIDDQELGDKRTHNPFQWPEPKA*
Ga0138382_1047812	Ga0138382_10478121	F074980	MSQSTIDEGPTDKQVAFLRGNTLKYTGEIPKTKRQASQLIQELSDKAGIPRKPNPSYTPKPTPVEDLSIVHEEATEEDLKYSEPLLKAAAKFHRLAVTAIKKRGEPLRGDIINAERNFLVKLEKLRSCNNG*
Ga0138382_1049279	Ga0138382_10492792	F030135	SSFTDIWHSTFAGCQFPDAILPGKEAFDLVAGPLN*
Ga0138382_1051833	Ga0138382_10518331	F093997	VPRDPYPQGVQAGLDDDRSGEDKPASDKGGLKMQKKSDGDTELIEKAEHTFSTETPRPNASIETVDKSIKDSSLILKDARAEGFEGLSTVARNILNGKYYVPSDDEVRGF*
Ga0138382_1054260	Ga0138382_10542601	F063612	APKSVAGGSPADEAASVAEESGLKIPRRGTGSKEDVYSPAL*
Ga0138382_1073418	Ga0138382_10734181	F030349	VETLHAGIDELTASISKLSQEIGDLSTEIADIDKAVAKSTEMRATEKADNEVTIKDSQQAQTAVAQAVQVLKEFYEKAGEATSLIQQQPESPEIFDAPYQGMGGESGGVVGMLEVIQSDFARLETDTKAAEAQAQSEFDKFSSESAVNRAEKAKDVEHKTTKKTNQESALTSKKADLEGTQKELDAALAYYDKLKPSCVDA
Ga0138382_1083808	Ga0138382_10838081	F000060	YRYQVIGDTPWERIKTLKSFLEGRIRALALEEVSKLKHQAKLSKLNYLKNGGEGLEHEILELKAEILEADSHQGSLDEAFELTHDEIKILKKLIKELYALAEPTRIKGYTDEQMFEANAANEFTVNMGREIQSEMIANGRPSAARIRNAMSNPHTWNALKQIGLIPKQTKILEGNVNPQLKIELKGVEDETIQNRIK*
Ga0138382_1090741	Ga0138382_10907411	F012639	MSSNNSGLVLQCSAAFAITAPVATVIAATMQTDPTVAVVTELQVPLTENWIATDVYILAATGAGTPTVINPVISMDKNRGRKLVQTPPLSSMLITNNTRPRFSPQPIGFE
Ga0138382_1091684	Ga0138382_10916841	F006550	MQAKINKREIDYEGQQLWLNPVDKTVYATDGAPTYSFSEVNGTPIYNYNSHFDAVKTAKDKLGTSYYHDAFVDQEFKSLAEDYVSDVKSGGRQRQAALRSSVNSAVDIVNVWETVLGKRDRVYAAKNLAKEIAVPNLLISIDTVTKFTGMEKLDEGMRARVKELPYTRATFTAAKYGLKFIIHEEARLKNVHNVLQDSIQVASTKIEQRQSFDVIDVVETNTAQAAIAVWDTFVAATDRSTGDPTIDIGIASLNIEGSGVGGRLNRVGMHQLTFAKFTGNSFLRGVASVGARDYNYEPGTSELVGIPGIGLVLDNGIKQGDVHCVDTELEPNCALFQGPQRVGSQHDEETGDDKYFIIDYHLAAKIQAETGRLITGAITPIDW
Ga0138382_1102135	Ga0138382_11021351	F060086	LLLSSGRHGEDRKRQYFLYDHETPLLDDLADLLY*
Ga0138382_1102985	Ga0138382_11029853	F006550	MTRIFNEKKADYNGMQLWLNPVDKTVYATDGKPTYSFHEAGGYPIYDFNAHFKGQKLAKDNFGNGAYQQDAFIDSEFKNLTEEYVSNVKAGGRQRTAALRSSTNAAVDIVNVWETVLGKQDRTYAGKNLAKEIAVPNLLISIDTATKFSGMTQLDEGQLGQLKELTYTRSTFEANKYGLKFVIHEEARLKNVHNVLQDSIQVASNKVEQRQSFDVVTLADASLTAKAAIGVWDTFVASADRSTNNPLLDLGIVQLLIEGSGVGGKLSRIGMHPLDFAKYTGNTFIRGVASTKPSEVTFEPGTRELPGFPNAGLVLDNAIRQGDVYCVDTEKEPTIALFQGPQRIGSAHDEETGDDKYFIIDYHLASIIQSETGRQITGISTPS
Ga0138382_1107799	Ga0138382_11077991	F025971	DALSSVSLSRGYLKITAGLTLDGSDGGVIHIADTDACAIVLPTITAALHGLEYRFIMAVDAGGSITITSGSDAVGDYYQGTLAVHSVDADDGFAANGSSNNIITMNAGTTGGLLGSEINLRAHYKVGWIVWGNVFGTDATGATPFSG*
Ga0138382_1109179	Ga0138382_11091791	F027996	MQLHFQLHTGLNISGDGWELSTNLSDGDVIVEEAKYNWAISDAITATFGSQAEPYGIAWGSHRPSGNSFVSAPRDHSISSGVGISTSAYGVGASAFYGDDNYWAARASYDVSAFGINSTIGLSVNSDDAQLIDVSKSGAILGIPFNSSFEYDLANDGAYWLRSDWS
Ga0138382_1111900	Ga0138382_11119002	F041257	PNYRPSGSEKDDVVDPWSEQPDGPFDHARFKTLTVLAHAAGRVMDRYTIKGFDGFTNRQADWACKLQSFFNLSNTFETLVLLLFTFQFSQNERFDLEMGKTEPIDRSHPLSQALMAWVWWDPSSETSRVDRFYPWEYGEERTIRMVAIASGLLPEPIDVTSPSDVPPSPPRTQ*
Ga0138382_1124642	Ga0138382_11246421	F006321	FVFSFVEAVGKAKKDGEMTWTDARYFIDPVKKLFDAVDEIEEVLPEMEDLSDEEYDELVEYVKGKWNYDEENLDWIVDTAIEAGRGILTLINMQKT*
Ga0138382_1125167	Ga0138382_11251671	F060086	PFELDSNLLLSSGRHGEDRKRQYFLYDHETPLLDDLADLLY*
Ga0138382_1126358	Ga0138382_11263581	F054097	ILTMFVFGTFLLASDYSQSETKPTPTITIAEDDSDKLYRKRRGGKGNKGRRRGGNGLR*
Ga0138382_1134108	Ga0138382_11341082	F065861	MGIIIVIRRKISLIYRENSITFDLPFRVVLFMIRGEIIGPNNNSAAIPTLEEGLLHKNKLVLNCLT*
Ga0138382_1145285	Ga0138382_11452851	F040684	KTMKRVIYLIILAMSLTLVFSQGKPCCKNKSGKGKVACKFNRANIDVNKDGTVIEDGTQIAAAGVQCPLSAQNSSINKKNCTNCTKSAWWKFWGKKERML*
Ga0138382_1146983	Ga0138382_11469831	F000007	GTGDAMRTVLLFVAAASRQFMQADPAPEDQLAKEMTHDLEMNFNKIAPFGKEDTAKELQDHAAKTQDTLVDAVENAEVAEIKRAVFRALTRLRAATIKEFDTIARLETQAIDAYNDAHHYRAENPLAHLHEDEAPVETDKLKSFH*
Ga0138382_1147581	Ga0138382_11475811	F001625	MALTISSSDWTNANVRKTLSWQAALVSKLRVYAIKVTFGSSDNYATNGVSADLKEGRISTLVAVIPTYSNISREVVYDKANEKIKILEVGGSTGSAMTELANASSQLTQRYSSF*
Ga0138382_1152277	Ga0138382_11522771	F105006	MNKFTLLNSNGVARPGFYIEITEFPQGNQPGKAIYVDGRAEDDTINFKYNPVTELLDAWHIGSPDSKFTMRPITVSGRVVGLDVQFSHIPNFTAHFALDLSTESEDIVYDILAPPVHLAEMNSVGF*
Ga0138382_1166006	Ga0138382_11660061	F090441	ELATLSFLDSLALGALITRRVIVGCQFPDAASYRKNDCDTFRSHSGT*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300011314: Marine microbial communities from the Southern Atlantic ocean - KN S15 Bottom_A metaT (Metagenome Metatranscriptome) (version 2)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences