| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300011196 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0121480 | Gp0155991 | Ga0137482 |
| Sample Name | Arctic soil microbial communities form glacier forefield, Midre Lovenbreen, Svalbard, Norway (Sample 17 - S13.2.60.2.a - transect 2, repeat 2, age 113 years, surface depth) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Bristol |
| Published? | Y |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 16687388 |
| Sequencing Scaffolds | 22 |
| Novel Protein Genes | 23 |
| Associated Families | 23 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 5 |
| All Organisms → cellular organisms → Bacteria | 9 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium calvum | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae | 1 |
| Not Available | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Metagenomes Of Arctic Soils |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | terrestrial biome → glacial feature → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Midre Lovenbreen, Svalbard, Norway | |||||||
| Coordinates | Lat. (o) | 78.99166667 | Long. (o) | 12.23 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001675 | Metagenome / Metatranscriptome | 654 | Y |
| F010995 | Metagenome | 296 | Y |
| F014266 | Metagenome | 264 | Y |
| F014312 | Metagenome / Metatranscriptome | 264 | Y |
| F014740 | Metagenome | 260 | Y |
| F015256 | Metagenome | 256 | Y |
| F024393 | Metagenome / Metatranscriptome | 206 | Y |
| F030046 | Metagenome | 186 | Y |
| F038916 | Metagenome | 165 | Y |
| F040574 | Metagenome / Metatranscriptome | 161 | Y |
| F045796 | Metagenome / Metatranscriptome | 152 | Y |
| F049665 | Metagenome | 146 | Y |
| F051096 | Metagenome | 144 | Y |
| F057767 | Metagenome / Metatranscriptome | 136 | Y |
| F059290 | Metagenome / Metatranscriptome | 134 | N |
| F063781 | Metagenome / Metatranscriptome | 129 | Y |
| F064034 | Metagenome / Metatranscriptome | 129 | Y |
| F064587 | Metagenome | 128 | Y |
| F065818 | Metagenome / Metatranscriptome | 127 | N |
| F073412 | Metagenome | 120 | Y |
| F074624 | Metagenome | 119 | Y |
| F089339 | Metagenome | 109 | Y |
| F091838 | Metagenome / Metatranscriptome | 107 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0137482_100030 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 19302 | Open in IMG/M |
| Ga0137482_100031 | All Organisms → cellular organisms → Bacteria | 19049 | Open in IMG/M |
| Ga0137482_100035 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 18305 | Open in IMG/M |
| Ga0137482_100053 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium calvum | 16894 | Open in IMG/M |
| Ga0137482_100056 | All Organisms → cellular organisms → Bacteria | 16681 | Open in IMG/M |
| Ga0137482_100058 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 16602 | Open in IMG/M |
| Ga0137482_100089 | All Organisms → cellular organisms → Bacteria | 14495 | Open in IMG/M |
| Ga0137482_100122 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 12862 | Open in IMG/M |
| Ga0137482_100181 | All Organisms → cellular organisms → Bacteria | 10623 | Open in IMG/M |
| Ga0137482_100221 | All Organisms → cellular organisms → Bacteria | 9540 | Open in IMG/M |
| Ga0137482_100334 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 8007 | Open in IMG/M |
| Ga0137482_100343 | All Organisms → cellular organisms → Bacteria | 7949 | Open in IMG/M |
| Ga0137482_100603 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. | 5674 | Open in IMG/M |
| Ga0137482_100677 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes | 5248 | Open in IMG/M |
| Ga0137482_100751 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas | 4855 | Open in IMG/M |
| Ga0137482_100908 | All Organisms → cellular organisms → Bacteria | 4107 | Open in IMG/M |
| Ga0137482_100951 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia | 3936 | Open in IMG/M |
| Ga0137482_101081 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae | 3506 | Open in IMG/M |
| Ga0137482_101144 | All Organisms → cellular organisms → Bacteria | 3325 | Open in IMG/M |
| Ga0137482_101208 | All Organisms → cellular organisms → Bacteria | 3159 | Open in IMG/M |
| Ga0137482_101686 | Not Available | 2022 | Open in IMG/M |
| Ga0137482_101879 | Not Available | 1700 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0137482_100030 | Ga0137482_1000302 | F073412 | METLNQLETQPIPIEEEEKRHTRRLLVGILCAVLLTGLVFGGYIFLRKRHERQLAAAAEVEIKKKVTKVEVSVDDPVVNGKTTVLSGTIHNISSEPLHNLGVELQLRRRVGSGVDLHAVTPEATDLAPGASTRYSLEIQTQDYLTATFLRVVGGSDRASIASKVQPGNPRPPMDSPESKTVVVDKPRTDRKDEFLNTPNNPGRVP* |
| Ga0137482_100031 | Ga0137482_1000315 | F064034 | MKEISIKIDDDLYRRASQKVSNLEAEVNQRVTEYLESVNGDADDVVATRARMAELFASTTNFGVGVRSSREEMHDR* |
| Ga0137482_100035 | Ga0137482_10003513 | F030046 | MDSETVAEIFTIVVVLFLIALIVSPVLAIWIYVFYQNRKRKRIRQRMLATRSDLIGNKNWFPARYASQPRFDALFKFFPWDGAGVFVVAPGSALFVGETLSGAPVTLQFAPGNARINWLGKCPWPNGMVSWIRFDTAAEKHYFSSETGVMIFGSHDTTKAIYDEANRNFGAPAAQNL* |
| Ga0137482_100053 | Ga0137482_10005310 | F010995 | MTIVQVAEEPMPSRRGTDVANEAQYHVVILYEHALLGEGIAKYLRAQAGVEATVASAYDAGAVISALALDPAVVIYELNDPLQQMGLAALAPNAVLIDVSTVITRGLGGAPCLAGLDQILQAVGDCGTVARPA* |
| Ga0137482_100056 | Ga0137482_1000565 | F065818 | MPEKGQQAKVYDIPEADLAKFEAVEGTKATYDEAKEKIAGGKELGMGVDLDKADVQAYSDICICYFWWRGVLYYRYQYCWQDCP* |
| Ga0137482_100056 | Ga0137482_1000566 | F091838 | MALVTTIAKKGEQSKVYDVPEAELAKYEAAEANQTSYEEGKDKLAEGEELAGLEFDKGDVQAYGNICICWIRMGHRWYYRYQYCWQSCP* |
| Ga0137482_100058 | Ga0137482_1000589 | F049665 | MSVRLKAIYKDGAFVPITNGDKLNVPENSEVELTVHNPYIIPPKAKSEEERQRALRELFASWDAHPLRADAPRLTRDEMHERR* |
| Ga0137482_100089 | Ga0137482_10008911 | F059290 | MNINGLRIYTNLLNAEVRNGLGVFYSRRDNGPFYRWSYEEKRWLAARVSSSNFSPKTLNPTSWKVVPAALQRSIVEHYQE* |
| Ga0137482_100122 | Ga0137482_10012210 | F040574 | MSFLARFRRPKEDPEVARRALLLQQGRIGDATVLSVEPDSEGIVMLAYTYTIGGVDYEAFQRLDAQQLLREYDYLPGARVPLRYDPRRPVNSFVV* |
| Ga0137482_100181 | Ga0137482_1001818 | F015256 | MKRNIFIGMVGLVLLFGSAASSAAQVKRVQMHIAGYLCGN* |
| Ga0137482_100221 | Ga0137482_1002211 | F014740 | MSNSFFNLLKPSRSIGLIGEKMRKLILVSLSLLLFCCAAPTQLQAQQPTPTPGPLTFFYDYSVFPGKELEVNTLINTVGGPVRDKLMAEGVVMAWGVETPILRYPGGTTHLIWFTVANWAGVEKVLNAMEARLAKVAADEALAAR |
| Ga0137482_100334 | Ga0137482_1003345 | F045796 | MTLSYSNLQQLAVSLIGAIVASSLFISAAVGPVPIV* |
| Ga0137482_100343 | Ga0137482_1003435 | F024393 | MMPVNESSATALVRFTGLGIICFNKERQRGEIGAIRDNKHELTIKIQKPVFQDGIDNDIIVYQDVATYEKLPKTDVQIEIKAAGKPAIEGYETYQSGDFDRLASADVNDFRWIVNMNALHGETALSPTANGKHPLAKIYIGNGLFYVHKLDRNLFFERVEKDAEGTAMQRETFGNVAETIGVKIEGDEVNFTIRIGGREETHSLRRIDGLPYRIEIKNIDPDGDAIVSDMPDYYQYLSSSTGNQFDLMPIVEDEGNDTATQPAVDFKVFCHPIGSDDLSSIDDL* |
| Ga0137482_100603 | Ga0137482_1006033 | F057767 | MNHPAVLAVAGRLDADQQKVADLVQRTTMAVSTLGQNWFGKDSTQFASDWAAHSKQLHLAADGIAAMAKQARTQASDQQATSTA* |
| Ga0137482_100677 | Ga0137482_1006773 | F089339 | MGRSPEDLTGKWADLSERRLLQYQGKLTGLYGHDGDQAAYDFLPRDKQEALALLADRLASLDLWQYVDRIVNVYGQGGVGMYFSESSGLEPVLDTRRDFTRKFARHRDNSGGFIEKHRKRASLHFLYIDPKEGEREWHVHLDLYGPMGSMFSAALHLYYERWKKFRPDWRIMKLWG* |
| Ga0137482_100751 | Ga0137482_1007513 | F063781 | MDVSVEIHCESCGSANYSLPEGAGEDAPILCNDCGADQGSVAELRAALAARALEQSAESLRRDLERLRGNDP* |
| Ga0137482_100908 | Ga0137482_1009085 | F014266 | MNFQQVENVLIRFRGETVHIKTMSGGIYEGAITDVTNDFVTLKVHGAAGEIDQVMVLLHSIESILPRSRT* |
| Ga0137482_100951 | Ga0137482_1009511 | F074624 | KTSMTNEQFERKMEFIVETLAQVAVNDQRHDARLDRLERIAKLMVRAGRRERRFRREQNARFDEQFGKVNIALAELAEAQKRTEASIAHTDSKLDALVDIIRKQQNGGS* |
| Ga0137482_101081 | Ga0137482_1010814 | F051096 | MTYHPTPRSTTAGTTCEDTVTQACVHIDAAARQLQAAADGDVFSPLLALAGQLALIRGGIDPSIRAAVDPNDCLGAIAHLDRALSLLDAVPPSAGPTDLLVWTLRLADARDSLLAARAGQP* |
| Ga0137482_101144 | Ga0137482_1011443 | F001675 | MWDTKRQIIWLVAGISFGTFIVFMDAHDEAGNFDKTVFVFWEIVLLAIIVTLFYIYSRKKT* |
| Ga0137482_101208 | Ga0137482_1012082 | F014312 | MKNKTDRSLTREFVFGIRLNVTKVTAIETDEGTANGVVRLWERAKAERFAIAMTPLVEAERLARKIERFSGRPDKNG* |
| Ga0137482_101686 | Ga0137482_1016861 | F064587 | IPLVKKGELVGSISVFDIITYLAECYPKATMNLPPLSAQVMDTVDGG* |
| Ga0137482_101879 | Ga0137482_1018791 | F038916 | LKDAAPADPRRCIHQTIVVAAPTTAPTETMNHISINPSDARDVLDYHNPDGDFEGGDFKRNLITAIICAGPEDRARLALGFPSLVAAIRSQTFNPAGIEYLEGIARSYERPSGQGR* |
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