NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F037758

Metagenome / Metatranscriptome Family F037758

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F037758
Family Type Metagenome / Metatranscriptome
Number of Sequences 167
Average Sequence Length 45 residues
Representative Sequence MASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPKVP
Number of Associated Samples 149
Number of Associated Scaffolds 167

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 97.60 %
% of genes from short scaffolds (< 2000 bps) 95.81 %
Associated GOLD sequencing projects 145
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (71.856 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(17.365 % of family members)
Environment Ontology (ENVO) Unclassified
(13.772 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(52.695 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.
1JGI26341J46601_101819722
2JGI26341J46601_101990431
3Ga0006840J48914_1000932
4Ga0006841J48915_1020252
5JGIcombinedJ51221_103965061
6Ga0062385_102887672
7Ga0058904_13880411
8Ga0068977_10642752
9Ga0068967_10318731
10Ga0068967_10410062
11Ga0068965_10473192
12Ga0068965_10582671
13Ga0068960_12351672
14Ga0058860_122336431
15Ga0066672_105539961
16Ga0066388_1078270963
17Ga0066388_1086002102
18Ga0068868_1014209271
19Ga0008090_101639521
20Ga0070714_1021581771
21Ga0070700_1008366841
22Ga0070708_1010178762
23Ga0070706_1004801143
24Ga0070699_1011665422
25Ga0070738_100517244
26Ga0070735_105668081
27Ga0075035_16098951
28Ga0075029_1003925313
29Ga0075021_106142611
30Ga0079220_119847982
31Ga0079219_116673882
32Ga0105244_105599842
33Ga0099827_116064152
34Ga0105241_107835961
35Ga0103862_10702092
36Ga0105238_104535683
37Ga0127471_10694322
38Ga0127485_11003713
39Ga0127440_10340931
40Ga0126316_10866093
41Ga0127458_10757762
42Ga0127465_11571782
43Ga0127498_11023762
44Ga0127464_10622801
45Ga0127464_11787251
46Ga0063827_1884932
47Ga0134064_103886702
48Ga0136449_1014556371
49Ga0136449_1017792651
50Ga0126351_12988973
51Ga0126346_13339072
52Ga0126361_100599451
53Ga0126350_105212742
54Ga0138589_1098852
55Ga0138551_1137941
56Ga0138592_10792262
57Ga0138584_11011941
58Ga0138584_11171861
59Ga0150983_155302652
60Ga0134042_12317351
61Ga0134058_12278062
62Ga0134026_12702002
63Ga0134052_12521361
64Ga0150984_1079794363
65Ga0157336_10174061
66Ga0157320_10108703
67Ga0157337_10064773
68Ga0164304_114780652
69Ga0157378_110099681
70Ga0157378_120613963
71Ga0182030_109218652
72Ga0134072_102746501
73Ga0182035_104848261
74Ga0187812_11944142
75Ga0187780_111882942
76Ga0187780_114279811
77Ga0187815_101211601
78Ga0187871_104835832
79Ga0187784_101799443
80Ga0179592_102381693
81Ga0210395_102917812
82Ga0210395_110146462
83Ga0213874_102676092
84Ga0210385_112807182
85Ga0210389_109076581
86Ga0182009_105881741
87Ga0210402_103432011
88Ga0213852_11368932
89Ga0213852_15490842
90Ga0242643_1248902
91Ga0222729_10501651
92Ga0242658_12241692
93Ga0212123_108664812
94Ga0242677_10710191
95Ga0242661_11212441
96Ga0208848_10722351
97Ga0207692_106784521
98Ga0207684_115623551
99Ga0207646_102645643
100Ga0207675_1024128782
101Ga0209621_10015454
102Ga0209325_10049571
103Ga0208324_10362131
104Ga0209178_14049801
105Ga0209073_101001451
106Ga0209274_102497642
107Ga0302220_100579351
108Ga0302220_103324962
109Ga0307280_103105931
110Ga0302234_103705122
111Ga0302226_100338651
112Ga0302228_105104831
113Ga0311368_110319061
114Ga0311368_110468982
115Ga0311369_110839061
116Ga0311340_107788151
117Ga0311371_107405963
118Ga0311339_109469141
119Ga0311338_107601661
120Ga0311338_113946322
121Ga0302181_101065702
122Ga0302184_102477182
123Ga0302317_104303242
124Ga0310038_102303721
125Ga0307482_12516952
126Ga0265743_1157072
127Ga0302314_100708261
128Ga0138301_12629741
129Ga0308201_102025193
130Ga0302325_122376212
131Ga0302324_1004786661
132Ga0302326_102414805
133Ga0318571_100250691
134Ga0318515_106181721
135Ga0307483_10326282
136Ga0318555_104911343
137Ga0318572_108269651
138Ga0310686_1029075593
139Ga0310686_1169856802
140Ga0318493_106544333
141Ga0306918_104530451
142Ga0318494_101256821
143Ga0318529_104860432
144Ga0318565_102678351
145Ga0307478_116987472
146Ga0318499_103638321
147Ga0318517_105883102
148Ga0318512_101140591
149Ga0318512_105988291
150Ga0306921_108630861
151Ga0308174_112623452
152Ga0318562_107230682
153Ga0318563_103902481
154Ga0318507_102402842
155Ga0318556_107618742
156Ga0318575_105711751
157Ga0318553_105767722
158Ga0311301_117690691
159Ga0307472_1020551932
160Ga0335082_100284827
161Ga0335078_127291332
162Ga0370515_0086732_2_115
163Ga0314792_109744_560_697
164Ga0314792_177431_454_585
165Ga0314797_106604_465_581
166Ga0314797_128871_3_146
167Ga0373948_0105479_1_162
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 47.89%    β-sheet: 0.00%    Coil/Unstructured: 52.11%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

510152025303540MASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPKVPSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
71.9%28.1%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Watersheds
Peatland
Bog Forest Soil
Freshwater Sediment
Soil
River Water
Iron-Sulfur Acid Spring
Watersheds
Soil
Soil
Vadose Zone Soil
Grasslands Soil
Surface Soil
Peatlands Soil
Agricultural Soil
Arctic Peat Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Soil
Untreated Peat Soil
Tropical Peatland
Permafrost Soil
Bog
Tropical Forest Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Palsa
Host-Associated
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Plant Roots
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Rhizosphere Soil
Avena Fatua Rhizosphere
Boreal Forest Soil
Tropical Rainforest Soil
3.6%8.4%11.4%17.4%3.0%3.0%4.2%12.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI26341J46601_1018197223300003219Bog Forest SoilMASNPTQDLQDEFLSTIRKSQETVIDAIRSWVETVQSITPKIPSVQVPGA
JGI26341J46601_1019904313300003219Bog Forest SoilMASTPTQDLQDEFLSTIRKSQETVIDAIRSWVEAVQSVTPKIP
Ga0006840J48914_10009323300003296Peatlands SoilMASTPTQDLQDEFLNTIRKSQETVIDAIKSWVETIQSVTPKIPSVQ
Ga0006841J48915_10202523300003298Peatlands SoilMASTPTQDLQDEFLNTIRKSQETVIDAIKSWVETIQSVTPKIP
JGIcombinedJ51221_1039650613300003505Forest SoilMPSTQQEVQDEVLSTVRKSQETVIEAIKSWVEAVQSVTPKLPSMN
Ga0062385_1028876723300004080Bog Forest SoilMPSTQQEVQDEILNTVRKSQETVIETIKSWVETVQSVTPKLPS
Ga0058904_138804113300004100Forest SoilMASTPTQDLQNEVLNTVRKSQETVIDAIKTWVETVQSITPKIPSVQVPG
Ga0068977_106427523300004468Peatlands SoilMASTPTQDIQDEFLNTIRKSQETVIDAIKSWVESVQSITP
Ga0068967_103187313300004470Peatlands SoilMASTPTQDIQDEFLNTIRKSQETVIDAIKSWVESVQSITPKIPS
Ga0068967_104100623300004470Peatlands SoilMASTPTQDLQDEFLNTIRKSQETVIDAIKSWVETVQSVTPKIPSVQVPGA
Ga0068965_104731923300004471Peatlands SoilMASNLPTQQLQDEFLSTIRKSQETVIDAIKTWVGTVQSVVPQMPSVPV
Ga0068965_105826713300004471Peatlands SoilMASTPTQDIQDEFLNTIRKSQETVIDAIKSWVESVQSITPKIP
Ga0068960_123516723300004602Peatlands SoilMTSYPTTQVQDEFLKAIRKSQETVLQAIRTWADTAQSMTPK
Ga0058860_1223364313300004801Host-AssociatedMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITPKIP
Ga0066672_1055399613300005167SoilMASTPTQDLQNEVLNTVRKSQETVIDAIKTWVETIQSITPKIPAVDLPFADKL
Ga0066388_10782709633300005332Tropical Forest SoilMVSTTQEVQDEFLNTVRKSQETVIEAIKSWVDAVQSVTPKLPSVSVPLADKL
Ga0066388_10860021023300005332Tropical Forest SoilMASTATQDLQDEVLTTVRKSQESVIDAIRTWVETVQSITPK
Ga0068868_10142092713300005338Miscanthus RhizosphereMASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPK
Ga0008090_1016395213300005363Tropical Rainforest SoilMPSTPTQDLQNDILTTVRKSQESVIDAIKTWVETVQSITPKVPAMDMP
Ga0070714_10215817713300005435Agricultural SoilMASTPTQGLQDEVLNTVRKSQEAVIDAIRTWSETVQSITPKLPSVPVPGADKL
Ga0070700_10083668413300005441Corn, Switchgrass And Miscanthus RhizosphereMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITP
Ga0070708_10101787623300005445Corn, Switchgrass And Miscanthus RhizosphereMASNPAQDLQDEFLSTVRKSQETVIDAIKTWVETVQSITPKVPSV
Ga0070706_10048011433300005467Corn, Switchgrass And Miscanthus RhizosphereMASTPTQDLQNEILNTVRKSQETVIDALKTWVETVQSITPK
Ga0070699_10116654223300005518Corn, Switchgrass And Miscanthus RhizosphereMASNPAQDLQDEFLSTVRKSQETVIDAIKTWVETVQSITP
Ga0070738_1005172443300005531Surface SoilMASYPAKELQDEFLSAIRKSQETVIEAVRTWAETVRSVTPKVPSVRVPLAER
Ga0070735_1056680813300005534Surface SoilMTTTAQDVQDEILNTVRKSQETVVEAIKSWVETVQSITPKLPSV
Ga0075035_160989513300005640Permafrost SoilMAHNPTQQLQDEFLSTIRKSQETVIDAIRTWAETVQS
Ga0075029_10039253133300006052WatershedsMANSPTQDLQEEFLSTIRKSQETVIDAIKTWVETVQSITPKIPSVQVPGADKLP
Ga0075021_1061426113300006354WatershedsMANSPTQDLQEEFLSTIRKSQETVIDAIKTWVETVQ
Ga0079220_1198479823300006806Agricultural SoilMASTPTQDLQNEVLSTVRKSQESVIDAIKTWVETVQS
Ga0079219_1166738823300006954Agricultural SoilMASTPTQDLQNEVLSTVRKSQETVIDALKTWVETV
Ga0105244_1055998423300009036Miscanthus RhizosphereMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSIT
Ga0099827_1160641523300009090Vadose Zone SoilMANNPTQDLQDQFLNTIRKGQESVVDAIKTWVETVQ
Ga0105241_1078359613300009174Corn RhizosphereMASTTTTQGLQDEVLNTVRRGQEAVIDALRTWSETVQSITPKLPV
Ga0103862_107020923300009249River WaterMADNPTQDLQKEVLDAVRKSQETVIDAIKSWAETLQSITPK
Ga0105238_1045356833300009551Corn RhizosphereMASTPTQDLQNEVLITVRKSQESVIDALKTWVETV
Ga0127471_106943223300010090Grasslands SoilMASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPKVPAVDMPFADKLP
Ga0127485_110037133300010091Grasslands SoilMASNPTQDLQNEVLTTVRKSQEAVIDAIKTWVETVQSITPKVPA
Ga0127440_103409313300010100Grasslands SoilMASTPTQDLQNEVLTTVRKSQESVIDAIKTWVETVQSI
Ga0126316_108660933300010110SoilMASTPTQDLQNEVLNTVRKSQESVIDALKTWVETVQSITPKIPA
Ga0127458_107577623300010112Grasslands SoilMASNPTQDLQNEILNTVRKSQESVIDAIKTWVETVQSI
Ga0127465_115717823300010118Grasslands SoilMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITPKVP
Ga0127498_110237623300010124Grasslands SoilMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITPKVPAVDMPFA
Ga0127464_106228013300010139Grasslands SoilMANNPTQDLQNEVLNTVRKSQETVIDAIRTMVDTVQTITPK
Ga0127464_117872513300010139Grasslands SoilMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITPKVPAVDMPFADK
Ga0063827_18849323300010164Peatlands SoilMASTPTQDIQDEFLNTIRKSQETVIDAIKSWVESVQSITPKIPSVQVPG
Ga0134064_1038867023300010325Grasslands SoilMATTPTQDLQNEVLNTVRKSQETVIDALKTWVETV
Ga0136449_10145563713300010379Peatlands SoilMASSPTQDIQDEFLNTIRKSQETVIDAIKSWVESVQSITPKIPS
Ga0136449_10177926513300010379Peatlands SoilMASTPTQDLQDEFLNTIRKSQETVIDAIKSWVETVQSVTPKIPSVQ
Ga0126351_129889733300010860Boreal Forest SoilMASTPTQGLQDELLNTVRKSQETVIDALKTWAETVQSITPKLPSVPVPG
Ga0126346_133390723300010865Boreal Forest SoilMASTPTQDLQNEVLNTVRKSQESVIDAIKTWVETVQSLTPKVPAVDMPFA
Ga0126361_1005994513300010876Boreal Forest SoilMASNPTQELQEEFLSTIRKSQDTVLDAVKTWAETVQSFVPQ
Ga0126350_1052127423300010880Boreal Forest SoilMPSTPQEVQDEILSTVRKSQETVVEAIKAWVETVQSVTPKLPS
Ga0138589_10988523300011016Peatlands SoilMASTPTQDIQDEFLNTIRKSQETVIDAIKSWVESVQSITPKIPSVQVPGAEKLPKPLDVV
Ga0138551_11379413300011029Peatlands SoilMASTPTQDLQDEFLNTIRKSQETVIDAIKSWVETIQS
Ga0138592_107922623300011069Peatlands SoilMASTPTQELQDEFLSTIRKSHETVIDAIRSWVETVQSITPKIPAVQV
Ga0138584_110119413300011073Peatlands SoilMASTPTQDLQDEFLSTIRKSQETVIDAIRSWVETVQSVTPKI
Ga0138584_111718613300011073Peatlands SoilMASNLPTQQLQDEFLSTIRKSQETVIDAIKTWVGTVQSVVPQMPSVPVP
Ga0150983_1553026523300011120Forest SoilMASTPTQDLQDEFLNTVRKSQDTVIDAIKSWVDTVQSISPKIPS
Ga0134042_123173513300012373Grasslands SoilMANTPTQDLQNEVLNTVRKSQESVIDAIKTWVETVQSITPKVPAVD
Ga0134058_122780623300012379Grasslands SoilMASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSIT
Ga0134026_127020023300012381Grasslands SoilMANTPTQDLQNEVLNTVRKSQESVIDAIKTWVETVQSITPKVPAVDMPFADKLP
Ga0134052_125213613300012393Grasslands SoilMASIPTQDLQNEVLTTVRKSQESVIDAIKTWVETVQSITPKVP
Ga0150984_10797943633300012469Avena Fatua RhizosphereMASTNTPVQGMQDELLNAVRKSQETVIDAIRTWSETIQSITPKLPSVPGA
Ga0157336_101740613300012477Arabidopsis RhizosphereMASTPTQDLQNEVLITVRKSQESVIEAIKTWVETIQSITPKVPAV
Ga0157320_101087033300012481Arabidopsis RhizosphereMASTPTQDLQNEVLITVRKSQESVIEAIKTWVETIQSITPKVPAVDMPLAD
Ga0157337_100647733300012483Arabidopsis RhizosphereMASTPTQDLQNEVLIAVRKSQESVIDALKTWVETIQSITPKVPVV
Ga0164304_1147806523300012986SoilMASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPKVPA
Ga0157378_1100996813300013297Miscanthus RhizosphereMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQ
Ga0157378_1206139633300013297Miscanthus RhizosphereMASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPKVP
Ga0182030_1092186523300014838BogMASNPTQDLQNEFLSTIRKSQETVIDAIRTWAETVQ
Ga0134072_1027465013300015357Grasslands SoilMASTPTQDLQNEVLTTVRKSQESVIDALKTWVETVQSITPK
Ga0182035_1048482613300016341SoilMVSTTQEVQDEILNTVRKSQETVIEAVKAWVEAIQSVTPKLPSVSLPLA
Ga0187812_119441423300017821Freshwater SedimentMASYPTKEIQDEFLNAIRKSQETVIEAVRTWVDTVQ
Ga0187780_1118829423300017973Tropical PeatlandMVSTPQEVQDEFLNTIRKSQETVIEAIKSWVETVQSITPKLPSVSVPLADRLPK
Ga0187780_1142798113300017973Tropical PeatlandMPSTPQEVQEEILNTIRKSQETVVEAIKSWVETVQS
Ga0187815_1012116013300018001Freshwater SedimentMVSTPQQVQDEFLNTIRKSQETVIEAIKSWVEAVQSITPKLPSMNVPLADK
Ga0187871_1048358323300018042PeatlandMASNPTQELSEEFLSTLRKSQDTVLDAIKTWADAVQS
Ga0187784_1017994433300018062Tropical PeatlandMASNPAQDLQEEFLKTIRKSQETVVEAIKTWVETVQS
Ga0179592_1023816933300020199Vadose Zone SoilMASNPTQDLQNEVLNTVRKSQESVIDAIKTWVETVQSITPKVPAVDLP
Ga0210395_1029178123300020582SoilMPNTPQQLQDELINTVRKSQETVLDAIKSWVETVQSITPKMPSVQVPFSDKL
Ga0210395_1101464623300020582SoilMASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPKIPAVDLPFADKLP
Ga0213874_1026760923300021377Plant RootsMTSNPAQDMQQEFLNNIRRSQEAVIDALKTWVEGVQSMTPKVPAVQVPGVENLPR
Ga0210385_1128071823300021402SoilMASTPTQDLQNEVLNTVRKSQETVIDAIKTWVETVQSITPKIPAVDMPFA
Ga0210389_1090765813300021404SoilMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITPKVPAVDMPFAD
Ga0182009_1058817413300021445SoilMASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPKV
Ga0210402_1034320113300021478SoilMASTPTQDLQDEFLSTVRKSQETVIDAIKTWVETVQSI
Ga0213852_113689323300021858WatershedsMASTPTQDVQNEILSTVRKSQESVIDAIKTWVETVQSITPKV
Ga0213852_154908423300021858WatershedsMASSPTQDIQDEFLNTIRKSQETVIDAIKSWVESVQSIT
Ga0242643_12489023300022500SoilMANTPAQDVQNEVLNTVRKSQETVLDALRTWVETVQSLTPKVPSVEIPYSD
Ga0222729_105016513300022507SoilMASTPTQDLQNEVLIAVRKSQESVIDALKTWVETVQSLTPKVP
Ga0242658_122416923300022530SoilMASTPTQDVQNEILSTVRKSQESVIDAIKTWVETVQSITPKLPSVDVPFAGKLPK
Ga0212123_1086648123300022557Iron-Sulfur Acid SpringMPNTPQELQEEIINTVRKSQETVLDAIKSWVETVQSITPKM
Ga0242677_107101913300022713SoilMASTPTQDVQNEILSTVRKSQESVIDAIKTWVETVQSITPK
Ga0242661_112124413300022717SoilMASTPTQDLQNEVLNTVRKSQESVIDAIKTWVETVQSITPKVPAVDMPFADKLP
Ga0208848_107223513300025509Arctic Peat SoilMASTPTQGLQDELLNAVRKSQETVIDALKTWAETVQSITPKLPSVPVPGADKLP
Ga0207692_1067845213300025898Corn, Switchgrass And Miscanthus RhizosphereMANNPTQDLQNEVLNTVRKSQETVVDALKTWVETVQSMTPKVPAVDL
Ga0207684_1156235513300025910Corn, Switchgrass And Miscanthus RhizosphereMASTPTQDLQNEVLNTVRKSQESVIDAIKTWVETVQSITPKIPAVDMPFADKLP
Ga0207646_1026456433300025922Corn, Switchgrass And Miscanthus RhizosphereMASNPAQDLQDEFLSTVRKSQETVIDAIKTWVETVQSITPKVPSVQVPG
Ga0207675_10241287823300026118Switchgrass RhizosphereMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITPKIPAVDMP
Ga0209621_100154543300026864Forest SoilMANTATQDLQNELLSTVRKGQESVIDAIRTWVETVQSIT
Ga0209325_100495713300027050Forest SoilMANTATQDLQNELLSTVRKGQESVIDAIRTWVETVQSITPK
Ga0208324_103621313300027604Peatlands SoilMASTPTQDLQDEFLNTIRKSQETVIDAIKSWVETIQSVTP
Ga0209178_140498013300027725Agricultural SoilMASTTTTQGLQDEVLNTVRRGQEAVIDAIRTWSETVQSITPKLPVVP
Ga0209073_1010014513300027765Agricultural SoilMANTTTTQGLQDEVLNTVRKSQEAVIDAIRTWSETVQSITPK
Ga0209274_1024976423300027853SoilMPNTPQQLQEELINTVRKSQETVLDAIKSWVETVQSIT
Ga0302220_1005793513300028742PalsaMASKPTQEVQDEFLSTIRKSQETVIDAIRTWVETVQSAVPQVPSVQLPLADKLPDPEE
Ga0302220_1033249623300028742PalsaMASKPTQDLQDEFLSTIRKSQETVIDAIRSWVETVQSAVPQVSSV
Ga0307280_1031059313300028768SoilMASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPKVPAVDM
Ga0302234_1037051223300028773PalsaMASKPTQEVQDEFLSTIRKSQETVIDAIRTWVETVQSAVPQVPSVQLPLADKLP
Ga0302226_1003386513300028801PalsaMASKPTQEVQDEFLSTIRKSQETVIDAIRTWVETVQSAVPR
Ga0302228_1051048313300028808PalsaMASNPTQELQEEFLSTIRKSQDTVLDAIKTWAEAVPSLAPQLSSVQLPLA
Ga0311368_1103190613300029882PalsaMASNITQDVQEQFLSTIRKSQEMTIDALKTWVETVQS
Ga0311368_1104689823300029882PalsaMASKPTQDLQDEFLSTIRKSQETVIDAIRTWVETVQSAVPQVPAVQLPLA
Ga0311369_1108390613300029910PalsaMASKPTQEVQDEFLSTIRKSQETVIDAIRTWVETVQSAVPQVPSVQLPLADKLPDPEEVVATAYDFAEQLL
Ga0311340_1077881513300029943PalsaMASKPTQDLQDEFLSTIRKSQETVIDAIRTWVETVQSAVPQ
Ga0311371_1074059633300029951PalsaMTSPQQVQDEILNTVRKSQETVVEAIKTWVETVQS
Ga0311339_1094691413300029999PalsaMTSPQQVQDEILNTVRKSQETVVEAIKTWVETVQSITP
Ga0311338_1076016613300030007PalsaMTSPQQVQDEILNTVRKSQETVVEAIKTWVETVQSITPKLPSV
Ga0311338_1139463223300030007PalsaMASKPTQEVQDEFLSTIRKSQETVIDAIRTWVETVQS
Ga0302181_1010657023300030056PalsaMTSPQQVQDEILNTVRKSQETVVEAIKTWVETVQSITSK
Ga0302184_1024771823300030490PalsaMASKPTQDVQDEFLSTIRKSQETVIDAIRTWVETVQSAVPQVPSVQLPLADKLPDPE
Ga0302317_1043032423300030677PalsaMASKPTQEVQDEFLSTIRKSQETVIDAIRTWVETVQSAVPQVPSV
Ga0310038_1023037213300030707Peatlands SoilMASTPTQDLQNEFLNTIRKSQETVIDAIKTWAEAVQS
Ga0307482_125169523300030730Hardwood Forest SoilMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITPK
Ga0265743_11570723300030885SoilMANAPTQDLQNEILTTVRKSQETVIDAIRTWVETVQSITPKVP
Ga0302314_1007082613300030906PalsaMASKPTQDLQDEFLSTIRKSQETVIDAIRTWVETVQSAVPQVPAV
Ga0138301_126297413300031022SoilMASTPTQDLQNEVLNTVRKSQESVIDAIKTWVETVQSMTPK
Ga0308201_1020251933300031091SoilMASTPTQDLQNEVLNTVRKSQETVIDALKTWVETVQSITPKVPAVD
Ga0302325_1223762123300031234PalsaMASKPTQEVQDEFLSTIRKSQETVIDAIRTWVETVQSAVPQVPSVQLPLADKLPDPEEVVATAY
Ga0302324_10047866613300031236PalsaMTSPQQVQDEILNTVRKSQETVVEAIKTWVETVQSITPKLPSVNVPLADKLP
Ga0302326_1024148053300031525PalsaMTSPQQVQDEILNTVRKSQETVVEAIKTWVETVQSITPKLPSVNVPLA
Ga0318571_1002506913300031549SoilMASNPTQDLQNEILNTVRKSQETVIDAIKTWVETIQSLTPKVPAVDLPF
Ga0318515_1061817213300031572SoilMASNPTQDLQNEILNTVRKSQETVIDAIKTWVETIQSLTPKVPAVDLPFADK
Ga0307483_103262823300031590Hardwood Forest SoilMASTPTQDVQNEILTTVRKSQESVIDAIKTWVETVQSITPKL
Ga0318555_1049113433300031640SoilMASNPTQDLQNEILNTVRKSQETVIDAIKTWVETIQSLTPKVPAVD
Ga0318572_1082696513300031681SoilMASTPTQDLQNEILTTVRKSQESVIDAIKAWVETIQSLTPKVP
Ga0310686_10290755933300031708SoilMASTPTQDIQDEFLNTVRKSQEAVIDAIKSWVETVQSVTPKLPSMNVPLAD
Ga0310686_11698568023300031708SoilMPSTPQEMQEEILNTVRKSQETVIDAIKSWVETVQS
Ga0318493_1065443333300031723SoilMASNPTQDLQNEILNTVRKSQETVIDAIKTWVETI
Ga0306918_1045304513300031744SoilMASNPTQDLQNEILNTVRKSQETVIDAIKTWVETIQSLTPKVPAV
Ga0318494_1012568213300031751SoilMVSTTQEVQDEILNTVRKSQETVIEAVKAWVEAIQSVTPKLPSVSVPLAD
Ga0318529_1048604323300031792SoilMASNPTQDLQNEILNTVRKSQETVIDAIKTWVETIQSLTPKVPAVDLP
Ga0318565_1026783513300031799SoilMASTPTQDLQNEILTTVRKSQESVIDAIKAWVETIQSLTPKVPAVDLPFAGQLPKPE
Ga0307478_1169874723300031823Hardwood Forest SoilMPSTQQEVQDEILNTVRKSQETVVEAIKSWVETVQSVTPKL
Ga0318499_1036383213300031832SoilMVSTTQEVQDEILNTVRKSQETVIEAVKAWVEAIQSV
Ga0318517_1058831023300031835SoilMASNPTQDLQNEILNTVRKSQETVIDAIKTWVETIQSLTPKV
Ga0318512_1011405913300031846SoilMASNPTQDLQNEILNTIRKSQETVIDAIKTWVETIQSL
Ga0318512_1059882913300031846SoilMVSSTQEVQDEILNTVRKSQETVLEAVKAWIEAVQSVTPKLPSVSMPLADRLPKPE
Ga0306921_1086308613300031912SoilMASNPTQAVQNEVLNTVSKSQEAVVDAIKTWVETVQSITPKIP
Ga0308174_1126234523300031939SoilMASTPTQSVQDDVLNTVRKSQEAVIDAIRTWSETIQSITPKLP
Ga0318562_1072306823300032008SoilMANNPGRDMQEEFLNAVRKSEETVIDAIKSWVETVQS
Ga0318563_1039024813300032009SoilMVSTPQEVQDEILNAVRKSQETVIEAIKSWVETVQSITPKLPSM
Ga0318507_1024028423300032025SoilMVSTPQEVQDEFLNTVRKSQETVLEAIKAWVEAVQSITPKLPSVSVPLADRLPK
Ga0318556_1076187423300032043SoilMASTPTQDLQNEILTTVRKSQESVIDAIKAWVETIQSLTPKVPAVD
Ga0318575_1057117513300032055SoilMASNPTQAVQNEVLNTVSKSQEAVVDAIKTWVETVQSITPKI
Ga0318553_1057677223300032068SoilMANTATQDLQDEILTTVRKGQESVIDAIKTWVETVQAITPK
Ga0311301_1176906913300032160Peatlands SoilMASTPTQDIQDEFLNTIRKSQETVIDAIKSWVESVQSITPK
Ga0307472_10205519323300032205Hardwood Forest SoilMASTPTQDLQNEVLSTVRKSQESVIDALKTWVETVQSITPKVPAVDMPFAHKQPKPEEDLASAY
Ga0335082_1002848273300032782SoilMASNPVQDMQQEFLNALRKSEETVVDAIKTWVETVQSITPKIPSVQVPGA
Ga0335078_1272913323300032805SoilMATNPTQQIQDEILNTIRKSQETVIDALQTWVETVQSITPKIPS
Ga0370515_0086732_2_1153300034163Untreated Peat SoilMASNSTQDMQEQFLSTIRKGQEMTIDALKTWVETVQSL
Ga0314792_109744_560_6973300034667SoilMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITPKIPAVD
Ga0314792_177431_454_5853300034667SoilMASTPTQDLQNEVLNTVRKSQESVIDAIKTWVETVQSITPKVPA
Ga0314797_106604_465_5813300034672SoilMASTPTQDLQNEVLNTVRKSQETVIDAIKTWVETVQSIT
Ga0314797_128871_3_1463300034672SoilMASTPTQDVQNEILSTVRKSQESVIDALKTWVETVQSITPKIPAVDMP
Ga0373948_0105479_1_1623300034817Rhizosphere SoilMASTPTQDLQNEVLITVRKSQESVIDALKTWVETVQSITPKIPAVDMPFADKLP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.