3300010996: ELM11109_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)

Overview

Basic Information

• IMG/M Taxon OID: 3300010996
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0121658 | Gp0160591 | Ga0139308
• Sample Name: ELM11109_Aassembled -- Sediment microbial communities from coastal marsh in Port Sulphur, LA sequencing method A (2X250bp)
• Sequencing Status: Permanent Draft
• Sequencing Center: Molecular Research LP (MR DNA)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71183183
• Sequencing Scaffolds: 32
• Novel Protein Genes: 36
• Associated Families: 35

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	10
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
All Organisms → cellular organisms → Archaea	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Cwc Coastal Marshes
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment → Cwc Coastal Marshes

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → freshwater marsh → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Louisiana, Port Sulphur, Bay Sansbois east
• Coordinates
  • Lat. (^o): 29.4542
  • Long. (^o): -89.76993
  • Alt. (m): N/A
  • Depth (m): 0 to .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000325	Metagenome / Metatranscriptome	1296	Y
F001971	Metagenome / Metatranscriptome	609	Y
F002876	Metagenome / Metatranscriptome	524	Y
F004898	Metagenome / Metatranscriptome	419	Y
F008236	Metagenome / Metatranscriptome	336	Y
F008812	Metagenome / Metatranscriptome	327	Y
F011355	Metagenome / Metatranscriptome	292	N
F012735	Metagenome / Metatranscriptome	278	Y
F018364	Metagenome / Metatranscriptome	235	Y
F019679	Metagenome / Metatranscriptome	228	Y
F021974	Metagenome / Metatranscriptome	216	Y
F025178	Metagenome / Metatranscriptome	203	Y
F025653	Metagenome / Metatranscriptome	200	Y
F030408	Metagenome	185	Y
F032870	Metagenome / Metatranscriptome	179	N
F034849	Metagenome / Metatranscriptome	173	Y
F036104	Metagenome / Metatranscriptome	170	Y
F037495	Metagenome	168	Y
F038920	Metagenome / Metatranscriptome	165	Y
F043481	Metagenome / Metatranscriptome	156	Y
F043981	Metagenome	155	N
F047392	Metagenome / Metatranscriptome	150	Y
F050784	Metagenome	145	Y
F050864	Metagenome	144	Y
F053661	Metagenome	141	Y
F061370	Metagenome / Metatranscriptome	132	Y
F078220	Metagenome	116	Y
F081276	Metagenome	114	N
F087210	Metagenome / Metatranscriptome	110	Y
F088437	Metagenome	109	Y
F094833	Metagenome	105	N
F098566	Metagenome	103	Y
F098703	Metagenome	103	Y
F100587	Metagenome	102	Y
F101032	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0139308_100529	Not Available	2771
Ga0139308_101502	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanocellales → Methanocellaceae → Methanocella → Methanocella paludicola	2084
Ga0139308_101562	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	2064
Ga0139308_102739	All Organisms → cellular organisms → Bacteria	1758
Ga0139308_105726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1403
Ga0139308_109990	Not Available	1184
Ga0139308_110893	All Organisms → cellular organisms → Archaea	1152
Ga0139308_112651	All Organisms → Viruses → Predicted Viral	1099
Ga0139308_115102	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	1037
Ga0139308_115177	All Organisms → cellular organisms → Archaea	1036
Ga0139308_116424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1010
Ga0139308_121086	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	930
Ga0139308_122217	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium	914
Ga0139308_122281	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	914
Ga0139308_122990	Not Available	904
Ga0139308_124910	Not Available	881
Ga0139308_126202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	867
Ga0139308_126214	Not Available	867
Ga0139308_131765	All Organisms → cellular organisms → Bacteria	815
Ga0139308_133572	All Organisms → Viruses	800
Ga0139308_138887	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	765
Ga0139308_140121	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	758
Ga0139308_142643	Not Available	744
Ga0139308_143588	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739
Ga0139308_153443	Not Available	695
Ga0139308_154529	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	691
Ga0139308_155331	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	688
Ga0139308_157671	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	680
Ga0139308_159894	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	672
Ga0139308_172625	Not Available	635
Ga0139308_175143	Not Available	628
Ga0139308_176013	Not Available	626

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0139308_100529	Ga0139308_10052910	F025178	MNIKNTTIELDEYQKHWIHTRPYGHDIVIWSEPNKKITIKCKWPDKVRSKDGRVYDSRR*
Ga0139308_100529	Ga0139308_1005294	F011355	MKSLVVIVVLLAGPDNLEKNYYPVDTEDNCAVVGQRIIEQIAKYKDNIGEQQGWYTLDDKLIVGHYCTVK*
Ga0139308_100529	Ga0139308_1005299	F032870	MSHRDAEELAAEIAYMQDDPSFHPRYNPKGKKDTDDLEARIERLEFRNEKLHKFNSKLIDEVRKLRRQLKIVVDQYRNKGAL*
Ga0139308_101502	Ga0139308_1015023	F025653	MSDPVKYFETKLKAMSLAELQAYKKRLDESIKQKISTNKPNEQIAPLILYRGILEHEIKTRTNQR*
Ga0139308_101562	Ga0139308_1015621	F094833	MTKEEKILNDGLEKVPEKKDNMDWRSSLAFFNSIGCSPFWAKVKLALSLAYYRITAFLIPISKSARLQLMT*
Ga0139308_102739	Ga0139308_1027393	F034849	MFPLILASIFTATPLGPGKVPYFMRQCDRIRIYDKSNDTHWILCINGVYQYPKNGKPQDRSLPQHKQSII*
Ga0139308_105726	Ga0139308_1057262	F050784	MKELWTGPEFTRRNRGRMGIMGSIATLLGVAFAIVGIISEASLTLLGLYPTSWYLLAIASLIFSLGCWLGWAVGIYLHAKETESKE*
Ga0139308_109990	Ga0139308_1099904	F025653	MSDPIKYFETKLKEMSLNELHAYKKRLDESIQQKIMKTAPNEQISPLILYRGILE
Ga0139308_110893	Ga0139308_1108931	F038920	LLTEILTDEQLINLYTTPGYLVAVDYPKKEVTLHTVDCMLADPISSVGVKPSKVRENKTGEFWFSESRDEANSKAEEIAKNNGYTYTICPICDR*
Ga0139308_112651	Ga0139308_1126512	F101032	MTDYITISFGPSEDVARFGWWNRKERFYDLEEAKQNGRQQLSNPGTFGYVVIEEGEDFWEVVDELGAAGASIEAKRFTYNVSPVPQLILV*
Ga0139308_112651	Ga0139308_1126515	F021974	MSTNIVSEIYSYHTDWKEGKVNQMWIEQFGDEYKGYSYVAVAHNPRNGKTMEMSKPRTSYQETLKWVRGWCGTSCT
Ga0139308_113763	Ga0139308_1137632	F087210	MRFLIGALALAGAEAALAHTPDTGFLSNFGHQLTSLHHSPAAMLLGVLVLALLLVAIRGLKAR*
Ga0139308_115102	Ga0139308_1151021	F000325	MKVANGNDKLGKGCIVVSRPVGDTCPSDCDYLNNGCYAEQTEKQYKNARNAGFANIVTEKHKIRAMILDAKKRKKSIRWHERGDWFLNGELDLDYVANVTWACESILADGDSLPDMWFYTHIYDDRLVSLEKYMNVYASVHDDNDMGEAMAQGFKLFAWCDSDMKIAPKRPKSKVKAQAWRKSLPKLVVLNGTRFVTCPEIRRGRSEITCTGTKDSISCDLCVRGLANVLFPAH*
Ga0139308_115177	Ga0139308_1151772	F098703	MIKKAHIVINLLPEASKASTIQIEERIRNEAKIPWCNQIEEVSIEDTEASYMKLKKHGVSSNVARNLVDLYTE*
Ga0139308_116424	Ga0139308_1164242	F036104	MNQEGIPLSIGIIVAASVLGAAFIAGMVLLAVLFA*
Ga0139308_121086	Ga0139308_1210861	F047392	LIASLGFAASAGQVAAVEANGSGQPANQIGLVHDHEPVKYAGYVLYFVEGKLAGHDQLTQTWSIVPREEAEFEHAFKIETHAIHSDADAAQPSFNMRNSWKEGYENSVRYELFHQDEDRGLVLDAIQGPDGKPQEIDHETEHYIFPGSLKIGTKWLSEPVTSSLPGTCELEVIGSEIYNGTNCWVVSSTRQPKKDPLMKNSETMRKTARFLFDPLTLSVLRIDAVTEGVGPLGRAFKFVYHMEVAE*
Ga0139308_122217	Ga0139308_1222172	F008236	SKYMNVYASIHNADDYKSAKSAGFELFAWCDSDMKIAPKRPRSKAKADAWRQALPKLVVLEGEKYVTCPEIRRGRGVVTCTPTKGSVSCDLCVRGLANVLFPSH*
Ga0139308_122281	Ga0139308_1222813	F008812	MAAKRGIRSMLQWIGPIVAIIGLLWTGVKDYQKGDIKLPKLPQKQVLTKPVYPIQYCLMAYDPNNDKVWYQHEDGRWYEYAPPQRRYAATPQYNQNQNQATVGTAYGTSTGSVGHYVR*
Ga0139308_122990	Ga0139308_1229901	F037495	MNNTDDSASDEDQLASVPMDYSALLAMTRPLVITEYALRSLRGEEVFRLGSGSSPGPADRRAEFALRIGEILCPGGECDAAWESIFASGKTGSNLKLRIHLGMS*
Ga0139308_124910	Ga0139308_1249101	F081276	MKTIEQLTRECDNLASRYYRLDSGSRERAARDWLKQVKKTAKMINNRFKKPIMNEKKGKFSQSF*
Ga0139308_126202	Ga0139308_1262021	F088437	CVGESGSGCHFSYIVVGLGTMAWTTIACPIELALGVEPPTHIIEDEKHMKECSEKVYVPIVYAPKEALIWWIDYIDSVSEGALLSSLERFKAISERLAHIVGANVDGWDPAQQALQKAFPGITLTECHLHAMIKFGQHLATFKRQRKAMGQSVSEQEEAQIRAAFARVLQAPTPAAYQKALNDLPNVFDNEPLVSRKDSLVTKQALFQAWTTDAKLAVVSTPLDQCMKFLNRKQDNMQTLHGPKSGLATVNAWAITRNCWRFLKGALRAGLSPLELAGANFLGIPWMQL
Ga0139308_126214	Ga0139308_1262142	F004898	MNSVELSELIEEFREIDLYETNPQDWMGYLESDDYWVPDSELAY*
Ga0139308_131765	Ga0139308_1317652	F098566	MTRNHFDLGLTEEDRRALREARLRPFEVDREVALRLIAEWGPLVDAAVRRRPLLRGAPFTLPGHEEGTGS*
Ga0139308_133572	Ga0139308_1335723	F001971	LTYEEFIHKGTEFYMEMVRLVDTKLKYRMEFTEQETEIKDHIMEFQHQVKLNELRDKFEKCLDIDKT*
Ga0139308_138887	Ga0139308_1388872	F078220	MFEAVVDVVHGKKREKLMFAKCPKCGRLNSFRPKSKGMQLTAMRCSKCGTIICFGVRGMNSHFSELAEIFCENCEDDCRKCPINKLVNEQTFSRKRYIK*
Ga0139308_140121	Ga0139308_1401212	F012735	MRKSNKQLETTIRILHEEWALNQGLRHKHQAASIKRQAASLKHVPRYVASDYKATSIK
Ga0139308_142643	Ga0139308_1426432	F061370	MKYTEDYGKMTDEQLVQTYNAVMANAYPGDESAIETEMEKRGIDLEYMDQPEQWG*
Ga0139308_143588	Ga0139308_1435881	F019679	VLTANPVLPVFLIVGGVFGALAAVSAYLISYHEYRQRMLRPDQKPRRMALQTAVVTFVVFLAGSLLLSIL
Ga0139308_153443	Ga0139308_1534431	F050864	MKQNTFTVNSKRIRPALRKGKTFLCSGILILLALALFSGCSLSEKTSAEPVMPEPLEFTYSVSVSAVPIQISSGNLHWHKELPNNSYTLEDIALEIYNFGDFDIPVAQLEITVDEDVSLFNIKQIIAGGTKENIALQPMMEGYDGGIHRVYVALLDNNGGVL
Ga0139308_154529	Ga0139308_1545291	F053661	VGKVVDMKDYYQTNKGRLLGIGGILIIVGLVLYFARGHEVVLVLPIVGMVLFIAGVIYKPRKKKTENVASEAQ*
Ga0139308_155331	Ga0139308_1553312	F002876	MACKKSELISAINSFGAARATGDGNLVGFSANLIGQLIDTLEFAPEEPEEPNKETAE*
Ga0139308_157671	Ga0139308_1576713	F018364	VQAICHIMCKEESEGTSHRGLMDALGIYPAGFWIDNLMDTHNALWSYYHDQKREQELKDDLDSLDEFIK*
Ga0139308_159894	Ga0139308_1598941	F043481	MSIDIKLERGVKGHNIVRKKCPNCGAEFVFKIHKNAVHDVGGDALYYPEENVVRCKVCMSTFKYEYKPKG*
Ga0139308_172625	Ga0139308_1726251	F043981	MKKETTVEKTKAMLVQEVEQKFRLSKGTLDSLERANKETIVKLLAL*
Ga0139308_175143	Ga0139308_1751433	F030408	LTMSIRIALITDRTGRYAHVWGEPITWNAFVDQLEDAGCEVIEEQTDDWEGSTREEIMEDCVSVHQLLTDTDFVPH*
Ga0139308_176013	Ga0139308_1760131	F100587	YYCGELQALLGNDSAARDHWRRAAAGRDFRQAAFAYRAAQRLGEASDAEWRPRLQAALDEADTYLFRGGHYPALATCSRGMLLLALGRVTEGDEALRQVFVLPDKGMPHHIARLALEER*