Metagenome / Metatranscriptome Family F072488

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072488
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	59 residues
Representative Sequence	MKTSATVLDPQLAWALWHGLTKLSLLLWDCYQEDFLKLAEEERVRRGKDSEEDLEIEIPF
Number of Associated Samples	76
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.64 %
% of genes near scaffold ends (potentially truncated)	26.45 %
% of genes from short scaffolds (< 2000 bps)	88.43 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.298 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (19.008 % of family members)
Environment Ontology (ENVO)	Unclassified (34.711 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (47.107 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.14% β-sheet: 0.00% Coil/Unstructured: 48.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF02371	Transposase_20	52.89
PF02954	HTH_8	0.83
PF00753	Lactamase_B	0.83
PF03480	DctP	0.83
PF00395	SLH	0.83
PF01425	Amidase	0.83
PF00126	HTH_1	0.83
PF07687	M20_dimer	0.83
PF13401	AAA_22	0.83
PF01527	HTH_Tnp_1	0.83
PF08530	PepX_C	0.83
PF03358	FMN_red	0.83
PF03400	DDE_Tnp_IS1	0.83
PF02730	AFOR_N	0.83
PF00497	SBP_bac_3	0.83
PF02615	Ldh_2	0.83
PF00106	adh_short	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	52.89
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.83
COG1662	Transposase and inactivated derivatives, IS1 family	Mobilome: prophages, transposons [X]	0.83
COG2055	Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family	Energy production and conversion [C]	0.83
COG2414	Aldehyde:ferredoxin oxidoreductase	Energy production and conversion [C]	0.83
COG2936	Predicted acyl esterase	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.30 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.31 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	16.53 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	16.53 %
Unclassified	root	N/A	15.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.70 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	9.09 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	2.48 %
Desulfarculales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.70 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.09 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2.48 %
Desulfarculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.70 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.09 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2.48 %
Desulfarculus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Desulfarculus	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.70 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.09 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2.48 %
unclassified Desulfarculus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Desulfarculus → unclassified Desulfarculus	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.70 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	9.09 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2.48 %
Desulfarculus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Desulfarculus → unclassified Desulfarculus → Desulfarculus sp.	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003859\|Ga0031653_10096598	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300003860\|Ga0031658_1020204	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300004481\|Ga0069718_10067684	Not Available	636	Open in IMG/M
3300004481\|Ga0069718_14687899	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300006224\|Ga0079037_100062118	All Organisms → cellular organisms → Bacteria	2981	Open in IMG/M
3300006224\|Ga0079037_100339637	All Organisms → cellular organisms → Bacteria → Proteobacteria	1405	Open in IMG/M
3300006224\|Ga0079037_100579026	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300006224\|Ga0079037_100828290	Not Available	910	Open in IMG/M
3300006930\|Ga0079303_10063322	All Organisms → cellular organisms → Bacteria → Proteobacteria	1333	Open in IMG/M
3300009009\|Ga0105105_10130629	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300009037\|Ga0105093_10829118	Not Available	539	Open in IMG/M
3300009053\|Ga0105095_10269249	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300009053\|Ga0105095_10486731	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300009053\|Ga0105095_10589509	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300009078\|Ga0105106_10008691	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7326	Open in IMG/M
3300009078\|Ga0105106_11182222	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300009082\|Ga0105099_10429106	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300009091\|Ga0102851_12864627	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300009091\|Ga0102851_12885029	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300009091\|Ga0102851_13436856	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300009111\|Ga0115026_10242390	All Organisms → cellular organisms → Bacteria	1230	Open in IMG/M
3300009131\|Ga0115027_10881121	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300009166\|Ga0105100_10114537	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1589	Open in IMG/M
3300009167\|Ga0113563_13048682	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300009167\|Ga0113563_13083828	Not Available	564	Open in IMG/M
3300009179\|Ga0115028_10307612	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1069	Open in IMG/M
3300009179\|Ga0115028_10314090	Not Available	1060	Open in IMG/M
3300009179\|Ga0115028_11792604	Not Available	533	Open in IMG/M
3300009388\|Ga0103809_1024899	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300009538\|Ga0129287_10313340	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300010284\|Ga0129301_1014074	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2227	Open in IMG/M
3300011408\|Ga0137460_1020973	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300012152\|Ga0137347_1047292	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300012931\|Ga0153915_13244010	Not Available	528	Open in IMG/M
3300012964\|Ga0153916_10554706	All Organisms → cellular organisms → Bacteria → Proteobacteria	1223	Open in IMG/M
3300012964\|Ga0153916_12221357	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300012964\|Ga0153916_12730080	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300013088\|Ga0163200_1079752	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300017929\|Ga0187849_1097915	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300018059\|Ga0184615_10213250	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300018068\|Ga0184636_1084534	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300018070\|Ga0184631_10071710	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300022548\|Ga0212092_1332237	Not Available	521	Open in IMG/M
3300024056\|Ga0124853_1083556	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300024056\|Ga0124853_1279718	All Organisms → cellular organisms → Bacteria	2853	Open in IMG/M
3300025951\|Ga0210066_1045132	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300026353\|Ga0256818_1001946	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1315	Open in IMG/M
3300027713\|Ga0209286_1075682	All Organisms → cellular organisms → Bacteria	1259	Open in IMG/M
3300027713\|Ga0209286_1190918	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300027715\|Ga0208665_10015437	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1954	Open in IMG/M
3300027715\|Ga0208665_10046501	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300027723\|Ga0209703_1118763	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300027723\|Ga0209703_1177183	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300027740\|Ga0214474_1218308	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300027792\|Ga0209287_10100018	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300027811\|Ga0256868_10099638	All Organisms → cellular organisms → Bacteria	1294	Open in IMG/M
3300027871\|Ga0209397_10095692	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300027877\|Ga0209293_10143029	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300027877\|Ga0209293_10676956	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300027887\|Ga0208980_10156053	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300027900\|Ga0209253_10540142	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	864	Open in IMG/M
3300027900\|Ga0209253_10813234	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300027900\|Ga0209253_11054251	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300027979\|Ga0209705_10479161	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300031707\|Ga0315291_10690718	Not Available	908	Open in IMG/M
3300031873\|Ga0315297_10591004	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	932	Open in IMG/M
3300031952\|Ga0315294_10812281	Not Available	804	Open in IMG/M
3300031997\|Ga0315278_11960395	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031999\|Ga0315274_10014884	All Organisms → cellular organisms → Bacteria	11029	Open in IMG/M
3300031999\|Ga0315274_10046662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	5859	Open in IMG/M
3300031999\|Ga0315274_11263743	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300031999\|Ga0315274_11391534	Not Available	676	Open in IMG/M
3300031999\|Ga0315274_11417256	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300032053\|Ga0315284_12280125	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300032069\|Ga0315282_10061398	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	3859	Open in IMG/M
3300032069\|Ga0315282_10142590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1920	Open in IMG/M
3300032069\|Ga0315282_10146406	All Organisms → cellular organisms → Bacteria	1880	Open in IMG/M
3300032069\|Ga0315282_10197368	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1473	Open in IMG/M
3300032069\|Ga0315282_10202538	Not Available	1442	Open in IMG/M
3300032070\|Ga0315279_10055789	All Organisms → cellular organisms → Bacteria → Proteobacteria	3698	Open in IMG/M
3300032118\|Ga0315277_10501322	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1217	Open in IMG/M
3300032177\|Ga0315276_10797812	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1010	Open in IMG/M
3300032342\|Ga0315286_10185994	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfarculales → Desulfarculaceae → Desulfarculus → unclassified Desulfarculus → Desulfarculus sp.	2224	Open in IMG/M
3300032342\|Ga0315286_10627200	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300032397\|Ga0315287_10781917	Not Available	1123	Open in IMG/M
3300032892\|Ga0335081_10730015	All Organisms → cellular organisms → Bacteria → Proteobacteria	1196	Open in IMG/M
3300032892\|Ga0335081_10826689	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300033402\|Ga0326728_10184995	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2142	Open in IMG/M
3300033413\|Ga0316603_11041716	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300033413\|Ga0316603_11120148	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300033413\|Ga0316603_11675338	Not Available	602	Open in IMG/M
3300033416\|Ga0316622_100952078	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300033416\|Ga0316622_101406131	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300033416\|Ga0316622_103324492	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300033418\|Ga0316625_100072348	All Organisms → cellular organisms → Bacteria	1805	Open in IMG/M
3300033419\|Ga0316601_101008182	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300033419\|Ga0316601_102535132	Not Available	515	Open in IMG/M
3300033433\|Ga0326726_10113900	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2434	Open in IMG/M
3300033433\|Ga0326726_11092704	Not Available	775	Open in IMG/M
3300033480\|Ga0316620_10026600	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3586	Open in IMG/M
3300033480\|Ga0316620_11270073	Not Available	723	Open in IMG/M
3300033480\|Ga0316620_11461964	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300033480\|Ga0316620_12538123	Not Available	510	Open in IMG/M
3300033485\|Ga0316626_11756361	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300033486\|Ga0316624_10275029	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1351	Open in IMG/M
3300033487\|Ga0316630_10522218	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300033489\|Ga0299912_10030387	All Organisms → cellular organisms → Bacteria → Proteobacteria	4687	Open in IMG/M
3300033489\|Ga0299912_10549044	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300033489\|Ga0299912_11079353	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300033493\|Ga0316631_10264290	Not Available	680	Open in IMG/M
3300033513\|Ga0316628_100492151	All Organisms → cellular organisms → Bacteria → Proteobacteria	1580	Open in IMG/M
3300033513\|Ga0316628_100734122	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1298	Open in IMG/M
3300033513\|Ga0316628_101942550	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300033513\|Ga0316628_104174103	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300033991\|Ga0334965_0000395	All Organisms → cellular organisms → Bacteria	34991	Open in IMG/M
3300034078\|Ga0373900_049465	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300034090\|Ga0326723_0112178	All Organisms → cellular organisms → Bacteria	1184	Open in IMG/M
3300034099\|Ga0373902_082449	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300034100\|Ga0373910_0210670	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300034191\|Ga0373909_0162908	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300034419\|Ga0373914_0041480	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.04%
Engineered	Engineered	4.96%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	66.12%
Terrestrial	Environmental → Terrestrial	28.93%
Bioremediation	Engineered → Bioremediation	4.13%
Lab Enrichment	Engineered → Lab Enrichment	0.83%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	57.85%
Soil	Environmental → Terrestrial → Soil	23.14%
Sediment	Environmental → Aquatic → Sediment	4.13%
Metal	Engineered → Bioremediation → Metal	4.13%
Peat	Environmental → Terrestrial → Peat	3.31%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.48%
Marine	Environmental → Aquatic → Marine	1.65%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.65%
Unclassified	Environmental → Aquatic → Unclassified	0.83%
Defined Media	Engineered → Lab Enrichment → Defined Media	0.83%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Sediment	20.66%
Lake	Environmental → Aquatic → Freshwater → Lake	19.01%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	19.01%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.05%
Lentic	Environmental → Aquatic → Freshwater → Lentic	4.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	4.13%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	4.13%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.31%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.48%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.65%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.65%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified	0.83%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	20.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	19.01%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	18.18%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	12.40%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	4.13%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.13%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	4.13%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	3.31%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.31%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.48%
Microbial Mats	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.83%
Unclassified	Environmental → Aquatic → Unclassified → Unclassified → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.83%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	19.01%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	18.18%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	12.40%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	9.09%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	6.61%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	4.13%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	4.13%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	3.31%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	3.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.48%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	1.65%
Hot Spring Microbial Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Microbial Mats → Hot Spring Microbial Mat	1.65%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.65%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.83%
Beach Aquifer Porewater	Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Beach Aquifer Porewater	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003859	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR	Environmental	Open in IMG/M
3300003860	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL	Environmental	Open in IMG/M
3300004481	Combined Assembly of Gp0112041, Gp0112042, Gp0112043	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009388	Metatranscriptome sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia from University of California, San Diego, USA - Hexadecane	Engineered	Open in IMG/M
3300009538	Microbial community of beach aquifer porewater from Cape Shores, Lewes, Delaware, USA - H-2W	Environmental	Open in IMG/M
3300010284	Hot spring microbial mat communities from California, USA to study Microbial Dark Matter (Phase II) - Cone Pool mat layer H metaG	Environmental	Open in IMG/M
3300011408	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT723_2	Environmental	Open in IMG/M
3300012152	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT590_2	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013088	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018068	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b2	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300022548	Cone Pool_combined assembly	Environmental	Open in IMG/M
3300024056	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300025951	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2 (SPAdes)	Environmental	Open in IMG/M
3300026353	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 PR4	Environmental	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027723	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027740	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214 HiSeq	Environmental	Open in IMG/M
3300027792	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027811	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227 HiSeq	Environmental	Open in IMG/M
3300027871	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027979	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032069	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20	Environmental	Open in IMG/M
3300032070	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_20	Environmental	Open in IMG/M
3300032118	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_15	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033489	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT95D214	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033991	Sediment microbial communities from Lake Vrana, Zadar, Croatia - 4 bact	Environmental	Open in IMG/M
3300034078	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.1	Engineered	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034099	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A0.3	Engineered	Open in IMG/M
3300034100	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.2	Engineered	Open in IMG/M
3300034191	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B4A4.1	Engineered	Open in IMG/M
3300034419	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B5A4.3	Engineered	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0031653_100965981	3300003859	Freshwater Lake Sediment	MKTSAPGLDPQLAWALWYELAKLSFFLWDCYREDFLKLAEEERVCRGKDSEEDLEIEIPF
Ga0031658_10202042	3300003860	Freshwater Lake Sediment	MKTSATGLDPQLAWALWYELAKLSFFLWDCYREDFLKLAEEERVHRGKDSEEDLEIEIPF
Ga0069718_100676841	3300004481	Sediment	SATGLDPQLAWALWYELAKLSFFLWACYQEDFLKLAEEERVCRGTDSEEDLEIEIPF*
Ga0069718_146878991	3300004481	Sediment	MKTSKRGLHPELAWALCQGLTKLSLLLWDCYEEEFLKLAEEEKVRRGSVSEEDRESETPLQRLYK*
Ga0079037_1000621182	3300006224	Freshwater Wetlands	MKTSATVLEPQLAWAIWHGLAKLSDLLWERYPEEFAKFAKEERVRLGMNSEEDRETETPF
Ga0079037_1003396372	3300006224	Freshwater Wetlands	LAKWSFLLWECYQEDFLRLAEEEKAKRGKDPEEELEIEIPF*
Ga0079037_1005790262	3300006224	Freshwater Wetlands	MKTSATVLEPELAWAIWHGLAKLSDLLWERYEKEFSKFTQEERINGGQMSQEDIEIEIPF
Ga0079037_1008282901	3300006224	Freshwater Wetlands	MKTSKTGLNPELAWALCRGLTKLSLLLWDCYEEEFLKLAEEEKVRRGSVSEEDREIETPF
Ga0079303_100633222	3300006930	Deep Subsurface	MKSPALDPQLAWDLWYELAKWSFLLWECYHEDFLRLAEEEKARRGKDPEEEFEIEIPF*
Ga0105105_101306292	3300009009	Freshwater Sediment	MKSPALDPQLAWALWYDLAKWSFLLWEYYHEDFLRLAEEEKAKRGKDPEEELKIEIPF*
Ga0105093_108291181	3300009037	Freshwater Sediment	LAWALWYELAELSFFLWDCYQEDFLKLAEEERVRGKDAEEDLEIEIPF*
Ga0105095_102692492	3300009053	Freshwater Sediment	MKSPALDPQLAWALWYELAKWSFVLWECYQEDFLRLAEEEKAKRGKDPEEELEIEIPF*
Ga0105095_104867312	3300009053	Freshwater Sediment	MKTSATGLDPQLAWALWYELAKLSFFLWDCYREDFLKLAEEERVHRGKDAEGDLEIEIPF
Ga0105095_105895092	3300009053	Freshwater Sediment	MKTLATGLDPQLAWALWYELAKLSLFLWACYREDFLKLAEEERARRGTDSEEESG*
Ga0105106_100086919	3300009078	Freshwater Sediment	MKTLATGLDPQLAWALWYELAKLSFFLWDCYQEDFLKLAEEERVRGKDAEEDLEIEIPF*
Ga0105106_111822222	3300009078	Freshwater Sediment	MKSPALDPQLAWALWYELAKWSFVLWECYQEDFLRLAEEEKAKRGKDPEEELEIKIPF*
Ga0105099_104291061	3300009082	Freshwater Sediment	MKTLATGLDPQLAWALWYELAKLSFFLWGCYREDFLKLAEEERARRGTDSEEELEIEIPF
Ga0102851_128646271	3300009091	Freshwater Wetlands	MKSPALDPQLAWALWYELAKWSFFLWECYQEDFLRLAEEEKARRGKDPEEELEIEIPF*
Ga0102851_128850292	3300009091	Freshwater Wetlands	MKTSRTGLNPELAWALCRGLTQLSLLLWDCYEEEFLKLAEEEKVRRGSVSEEDREIETPF
Ga0102851_134368561	3300009091	Freshwater Wetlands	MKTSATVLEPELAWAIWHGLAKLSDLLWERYEKEFSKFTQEERINGGQMSQEDIEIE
Ga0115026_102423902	3300009111	Wetland	MKSPTLDPQLAWDLWYELAKWSFLLWECYHEDFLRLAEEEKAKRGKDPEEEFEIEIPF*
Ga0115027_108811211	3300009131	Wetland	MKSSNFVLDPRLAWTLCRELTKMRLLLWDCYEEEFLKLAKEERARWGTDSK
Ga0105100_101145372	3300009166	Freshwater Sediment	MKSPALDPQLAWALWYDLAKWSFLLWECYHEDFLRLAEEEKAKRGKDPEEELKIEIPF*
Ga0113563_130486821	3300009167	Freshwater Wetlands	MKSSNPVLDPRLAWALCRELTKVRLLLWDCYEEDFLKLAKEERGNRGTDSEEDPEIIF*
Ga0113563_130838281	3300009167	Freshwater Wetlands	EAGKMKTSRTGLNPELAWALCRGLTQLSLLLWDCYEEEFLKLAEEEKVRRGSVSEEDREIETPF*
Ga0115028_103076124	3300009179	Wetland	ELPTGCRPGFFCGREEGEMKSSNFVLDPRLAWTLCRELTKMRLLLWDCYEEEFLKLAKEERARWGTDSKEELEAETPF*
Ga0115028_103140901	3300009179	Wetland	SPTLDPQLAWDLWYELAKWSFLLWECYHEDFLRLAEEEKARRGKDPEEEFEIEIPF*
Ga0115028_117926041	3300009179	Wetland	EGEMKSSNFVLDPRLAWTLCRELTKMRLLLWDCYEEEFLKLAKEERARWGTDSKEELEAETPF*
Ga0103809_10248992	3300009388	Enrichment Culture	MKSPALDPQLAWALWYELAKWSFLLWECYQEDFLRLAEEEKAKRGKDPEEEFEIEIPF*
Ga0129287_103133401	3300009538	Beach Aquifer Porewater	MKTSATGLDPQLAWVLWHGLTKLSLLLWDCYEKDFLELAKEEGVERAKDSEEEIEIPF*
Ga0129301_10140742	3300010284	Hot Spring Microbial Mat	MKSSATVLDPQLAWALWHGLTKLSLLLWDCYEEDFLKLAEEERVRLGKDSEEDLEIPF*
Ga0137460_10209732	3300011408	Soil	MRSSAPVLEPQLAWALWHGLAKLSNLLWERYEEDFSKLAEEERRALAKDSEEDLEIPF*
Ga0137347_10472921	3300012152	Soil	MKSSATVLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERAGLAKDSEEDLEIPF*
Ga0153915_132440101	3300012931	Freshwater Wetlands	MKSSNPVLDPRLAWALCRELTKVRLLLWDCYEEDFLKLAKEERGNRSTDSEEDPEIIF*
Ga0153916_105547063	3300012964	Freshwater Wetlands	CMPVFFCWSWEGEMKTSATVLEPRLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERVRRGKDSEEDLEIEIPF*
Ga0153916_122213571	3300012964	Freshwater Wetlands	MKSSTSVLDPRLAWALCRELTKVRLLLWDCYEEDFLKLAKEERVRRGTDSEEDPEIIF*
Ga0153916_127300802	3300012964	Freshwater Wetlands	LRGGTPVPFFWSREGEMKTSATLLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERVRLGKDSEEDLEIEIPF*
Ga0163200_10797522	3300013088	Freshwater	MRSSAPVLEPQLAWALWHGLAKLSNLLWERYEEDFSKLAEEERGALAKDSEEDLEIPF*
Ga0187849_10979151	3300017929	Peatland	MKTSATVLEPQLAWAIWHGLAKLSDLLWERYEEEFLKLAEEERVRRGPVSEEELEIEIPF
Ga0184615_102132501	3300018059	Groundwater Sediment	MRSSAPVLEPQLAWALWHGLAKLSNLLWERYEEDFSKLAEEERGALAKDSEEDLE
Ga0184636_10845341	3300018068	Groundwater Sediment	MKSSATVLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERAGLAKDSEEDLEIPF
Ga0184631_100717102	3300018070	Groundwater Sediment	MRSSAPVLEPQLAWALWHGLAKLSNLLWERYEEDFSKLAEEERGALAKDSEEDLEIPF
Ga0212092_13322371	3300022548	Hot Spring Microbial Mat	LGVLDPQLAWALWHGLTKLSLLLWDCYEEDFLKLAEEERVRLGKDSEEDLEIPF
Ga0124853_10835562	3300024056	Freshwater Wetlands	MKTSAKLPDPQLAWALWHGLTKLSLLLWDCYQKEFLKLAEEERVSRGQASQEDREIEMPF
Ga0124853_12797186	3300024056	Freshwater Wetlands	MKSPTLDPQLAWDLWYELAKWSFLLWECYHEDFLRLAEEEKAKRGKDPEEEFEIEIPF
Ga0210066_10451321	3300025951	Natural And Restored Wetlands	MKTSATGLDPQLAWALWYELAKLSFFLWDCYQEDFLKLAEEERVRRGKDAEEDLEIEIPF
Ga0256818_10019462	3300026353	Sediment	MKSSHSVLDPRLAWALCRELTKLRLFLWDCYEEDFLKLAKEERARQGSVSEEELEAETP
Ga0209286_10756822	3300027713	Freshwater Sediment	MKSPALDPQLAWALWYDLAKWSFLLWEYYHEDFLRLAEEEKAKRGKDPEEELKIEIPF
Ga0209286_11909181	3300027713	Freshwater Sediment	MKTSATGLDPQLAWALWYELAKLSFFLWDCYREDFLKLAEEERVCRGTDSEEDLEIEIPF
Ga0208665_100154372	3300027715	Deep Subsurface	MKSSNFVLDPRLAWTLCRELTKMRLLLWDCYEEEFLKLAKEERARWGTDSKEELEAETPF
Ga0208665_100465011	3300027715	Deep Subsurface	MKSPTLDPQLAWDLWYELAKWSFLLWECYHEDFLRLAEEEKARRGKDPEEEFEIEIPF
Ga0209703_11187632	3300027723	Freshwater Sediment	MKTLATGLDPQLAWALWYELAKLSFFLWDCYQEDFLKLAEEERVRGKDAEEDLEIEIPF
Ga0209703_11771831	3300027723	Freshwater Sediment	MKSPALDPQLAWALWYELAKWSFVLWECYQEDFLRLAEEEKAKRGKDPEEELEIEIPF
Ga0214474_12183082	3300027740	Soil	MKTSATVLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERVRRGKDSEEDLEIEIPF
Ga0209287_101000181	3300027792	Freshwater Sediment	MKSPALDPQLAWALWYDLAKWSFLLWECYHEDFLRLAEEEKAKRGKDPEEELEIEIPF
Ga0256868_100996381	3300027811	Soil	MKTSATVLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERVRRGKHSEEDLEIEIPF
Ga0209397_100956922	3300027871	Wetland	MKSPALDPQLAWDLWYELAKWSFLLWECYHEDFLRLAEEEKARRGKDPEEEFEIEIPF
Ga0209293_101430292	3300027877	Wetland	MKSSNFVLDPRLAWTLCRELTKVRLLLWDCYEEEFLKLAKEERARWGTDSKEELEAETPF
Ga0209293_106769561	3300027877	Wetland	MKTSATVLEPQLAWAIWHGLAKLSTLLWDHYEEEFLKLAEEERASRGTASEEELEIEIPF
Ga0208980_101560531	3300027887	Wetland	MKTSATVLEPELAWAIWHGLAKLSDLLWERYREEFLKLAEEERVRRGPVSEEELEIEIPF
Ga0209253_105401423	3300027900	Freshwater Lake Sediment	SATGLDPQLAWALWYELAKLSFFLWDCYREDFLKLAEEERVHRGTDSEEDLEIEIPF
Ga0209253_108132341	3300027900	Freshwater Lake Sediment	MKTSATVLEPQLAWALWHGLTKLSLLLWDCYEEEFLKLAEEERANRGTGSEEDLEIEIPF
Ga0209253_110542512	3300027900	Freshwater Lake Sediment	MKSSNSVLDPRLAWALCRELTKVRLLLWDCYEEDFLKSAKEERVGRGTDSEEDPEIIF
Ga0209705_104791611	3300027979	Freshwater Sediment	MKSPALDPQLAWALWYDLAKWSFLLWECYHEDFLRLAEEEKAKRGKDPEEELKIEIPF
Ga0315291_106907181	3300031707	Sediment	MRSSAPVLEPQLAWALWHGLAKLSNLLWERYEEDFSKLVEEERGALAKDSEEDLEIPF
Ga0315297_105910041	3300031873	Sediment	SCRPVCFYGRREGEMKTSATGLDPQLAWALWYELAKLSFFLWDCYREDFLKLAEEERVCRGTDSEEDLEIEIPF
Ga0315294_108122811	3300031952	Sediment	CRPVCFYGRREGEMKTSATGLDPQLAWALWYELAKLSFFLWDCYREDFLKLAEEERVCRGTDSEEDLEIEIPF
Ga0315278_119603951	3300031997	Sediment	MKSSAPVLEPQLAWALWHGLAKLSNLLWERYEEDFSKLAEEERGALAKDSEEDLEIPF
Ga0315274_100148842	3300031999	Sediment	MPVFFYWSREGEMKTSATVLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERVRRGKDSEEDLEIEIPF
Ga0315274_100466626	3300031999	Sediment	VLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERVRLGKDSEEDLEIPF
Ga0315274_112637432	3300031999	Sediment	MRSSAPVLEPQLAWALWHGLAKLSNLLWERDEEDFSKLAEEERGALAKDSEGDLEIPF
Ga0315274_113915342	3300031999	Sediment	WSRKGEMKTSATVLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERVRRGKDSEEDLEIEIPF
Ga0315274_114172561	3300031999	Sediment	MKTSATVLDPQLAWALWHGLTKLSLLLWDCYQEDFLKLAEEERVRRGKDSEEDLEIEIPF
Ga0315284_122801251	3300032053	Sediment	MKTSATGLDPQLAWALWYELAKLSFSLWACYREDFLKLAEEERVRRGKDAE
Ga0315282_100613982	3300032069	Sediment	MKTSATVLEPQLAWAIWHGLAKLSDLLWDCYQEDFLKFAKEERVRRGAVSEEELEVEIPF
Ga0315282_101425902	3300032069	Sediment	MKTSATGLDPQLAWALWHGLTKLSLLLWNCYQEEFLKLAEEERVSRGTDSEEDREIETPF
Ga0315282_101464062	3300032069	Sediment	MKTSATVLEPQLAWALWHGLAKLSTLLWERYEEDFLKFTEEERARRGSVSEEELEAEIPF
Ga0315282_101973682	3300032069	Sediment	MKTSATVLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERVGLAKDSEEDLEIEIPF
Ga0315282_102025382	3300032069	Sediment	MKTSATGLDPQLAWALWHGLTKLSLLLWDCYEEEFLKLAEEERARRGAVSEEDREIETPF
Ga0315279_100557893	3300032070	Sediment	MKTSATVLDPQLAWALWHGLTKLSLLLWDCYQEDFLKLAEEERVRRGTDSEEDLEIEIPF
Ga0315277_105013222	3300032118	Sediment	MRSSAPVLEPQLAWALWHGLAKLSNLLWERYEEDFSKLVEEERGALAKDSEED
Ga0315276_107978121	3300032177	Sediment	RSSAPVLEPQLAWALWHGLAKLSNLLWERYEEDFSKLVEEERGALAKDSEEDLEIPF
Ga0315286_101859943	3300032342	Sediment	LAWALWYELAKLSFFLWACYREDFLKLAEEERVCRGTDSEEDLEIEIPF
Ga0315286_106272002	3300032342	Sediment	MKTSATGLDPQLAWALWYELAKLSFFLWACYREDFLKLAEEERVCRGTDSEEDLEIEIPF
Ga0315287_107819171	3300032397	Sediment	REGEMKTSATGLDPQLAWALWYELAKLSFFLWACYREDFLKLAEEERVCRGTDSEEDLEIEIPF
Ga0335081_107300151	3300032892	Soil	MKTSATVLEPQLAWAIWHGLAKLSDLLWDRYPEEFAKFAKEERVRRGEDSKEDLDIEIPF
Ga0335081_108266891	3300032892	Soil	MKTLATVLEPELAWAIWHGLAKLSDLLWERYPEEFTKFAKEERVRLGMNSEEDRETETPF
Ga0326728_101849952	3300033402	Peat Soil	MKTSATVLEPQLAWAIWHGLAKLSDLLWERYEEEFLKMAEEERVRRGTVSEEELEIEIPF
Ga0316603_110417162	3300033413	Soil	MKSPALDPQLAWALWYELAKWSFFLWECYQEDFLRLAEEEKAKRGKDTEEELEIEIPF
Ga0316603_111201482	3300033413	Soil	MKTSATVLEPQLAWAIWHGLAKLSTLLWDHYEEEFLKLAEEERASRGPASEEELEIEIPF
Ga0316603_116753382	3300033413	Soil	AWDLWYELAKWSFLLWECYHEDFLRLAEEEKAKRGKDPEEEFEIEIPF
Ga0316622_1009520782	3300033416	Soil	MKSSNFVLDPRLAWTLCRELTKMRLLLWDCYEEEFLQLAKEERARWGTDSKEELEAETPF
Ga0316622_1014061312	3300033416	Soil	MKSPALDPQLAWDLWYELAKWSFLLWECYQEDFLRLAEEEKARRGKDPEEEFEIEIPF
Ga0316622_1033244922	3300033416	Soil	MKSSNFVLHPQLAWTLCRELTKVRLLLWDCYEEEFLKLAKEERARWGTDSKEELEAETPF
Ga0316625_1000723481	3300033418	Soil	MKSPTLDPQLAWDLWYELAKWSFLLWECYHEDFLRLAEEEKARRGKNPEEEFEIEIPF
Ga0316601_1010081822	3300033419	Soil	MKSPALDPQLAWALWYELAKWSFFLWECYQEDFLRLAEEEKARRGKDPEEELEIEIPF
Ga0316601_1025351321	3300033419	Soil	EMKSPALDPQLAWALWYDLAKWSFLLWECYQEDFLRLAEEEKAKRGKDPEEELEIEIPF
Ga0326726_101139001	3300033433	Peat Soil	MKSSNSVLDPQLAWALWHGLTKLSLLLWDCYEKDFLKLAKEERDRRGTDSEEDREIETPF
Ga0326726_110927042	3300033433	Peat Soil	MKSSNSVLDPRLAWALCRELTKVRLLLWDCYEEDFLKWAKEERVRRSTDSEEDPEIIF
Ga0316620_100266002	3300033480	Soil	MKTSRTGLNPELAWALCRGLTKLSLLLWDCYEEEFLKLAEEEKVRRGSVSEEDREIETPF
Ga0316620_112700732	3300033480	Soil	MKTSRTRLNPELAWALCRGLTQLSLLLWDCYEEEFLKLAEEEKVRRGSVSEEDREIETPF
Ga0316620_114619641	3300033480	Soil	MKSPALDPQLAWALWYELAKWSFLLWECYQVDFLRLAEEEKAKRCKDTEEELE
Ga0316620_125381232	3300033480	Soil	DPQLAWDLWYELAKWSFLLWECYQEDFLRLAEEEKAKRGKDTEEELEIEIPF
Ga0316626_117563612	3300033485	Soil	MKSSNFVLDPRLAWTLCRELTKVRLLLWDCYEEEFLKLAKEERARWGTDSKEELE
Ga0316624_102750291	3300033486	Soil	MKTSRTGLNPELAWALCRGLTKLSLLLWDCYEEEFLKLAEEEKVRRGSASEEDREIETPL
Ga0316630_105222182	3300033487	Soil	MKTSATVLEPQLAWAIWHGLAKLSTLLWDHYEEEFLKLAEEERASRGPASEEELEIEIP
Ga0299912_100303879	3300033489	Soil	MKTPATVLEPQLAWAIWHGLAKLSDLLWERYEEDFLKLTEEERVRRGTDPEEDLEIEIPF
Ga0299912_105490441	3300033489	Soil	MKSSTPVLDPQLAWALWHGLTKLSLLLWDCYKEDFLKLAEEERVRRGKHSEEDLEIEIPF
Ga0299912_110793531	3300033489	Soil	MKSSNSVLDPRLAWALCRELTKVRLLLWDCYEEDFLKLAKEERVRWGTDSEEDPEIIF
Ga0316631_102642901	3300033493	Soil	RSLVFGWEEGREMKSPTLDPQLAWDLWYELAKWSFLLWECYHEDFLRLAEEEKARRGKDPEEEFEIEIPF
Ga0316628_1004921512	3300033513	Soil	MKTSKTGPNPELAWALCRGLTKLSLLLWDCYEEDFLKLAEEEKVRRGAVSEEDREIETPL
Ga0316628_1007341222	3300033513	Soil	MKSPTLDPQLAWALWYELAKWSFLLWECYHEDFLRLAEEEKAKRGKDPEEELEIEIPF
Ga0316628_1019425501	3300033513	Soil	MKTSKTGLNPELAWALCRGLTKLSLLLWDCYEEEFLKLAKEERVRRGTDSEEDPDLGSSPYRVGGF
Ga0316628_1041741031	3300033513	Soil	MKTSATGLDPQLAWALWHGLTKLSLLLWDCYQEEFLKLAEEERVNRGTASEEDREIEIPF
Ga0334965_0000395_298_480	3300033991	Sediment	MKSSHSVLDPRLAWALCRELTKLRLFLWDCYEEEFLKWAKEERARQGSGSEEELEAETPF
Ga0373900_049465_578_754	3300034078	Sediment Slurry	MKSSNPALDPRLAWALCRGLTKLSLLLWDCYEEDFLKLAKEERGNRGTASEEDPEIIF
Ga0326723_0112178_841_1017	3300034090	Peat Soil	MKTSTTGLNPELAWALCRELTKLRLLLWDCYEEDFLKWAKEERVRRSTDSEEDPEIIF
Ga0373902_082449_84_260	3300034099	Sediment Slurry	MKSSNSVLDPRLAWALCRELTKVRLLLWDCYEEDFLKLAKEERGNRGTASEEDPEIIF
Ga0373910_0210670_1_156	3300034100	Sediment Slurry	MKSSNPVLDPRLAWALCRELTKLRLFLWDCYEEDFLKWAKEERARQGSVSEE
Ga0373909_0162908_374_550	3300034191	Sediment Slurry	MKSSNPVLDPRLAWALCRGLTKLSLLLWDCYEEDFLKLAKEERVHRSTDSEEDPEIIF
Ga0373914_0041480_459_641	3300034419	Sediment Slurry	MKTSATVLEPQLAWAIWHGLAKLSDLLWERYEEEFLKFAKEERIRRGAVSEEDREIETPF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072488

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences