3300009040: Agave microbial communities from Guanajuato, Mexico - Mg.Ma.e

Overview

Basic Information

• IMG/M Taxon OID: 3300009040
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0053055 | Gp0104155 | Ga0058703
• Sample Name: Agave microbial communities from Guanajuato, Mexico - Mg.Ma.e
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 543108034
• Sequencing Scaffolds: 17
• Novel Protein Genes: 71
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	2
Not Available	9
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rhamnaceae → Paliureae → Ziziphus → Ziziphus jujuba	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Agave Microbial Communities From California, Usa, And Mexico
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant surface

Location Information

• Location: Guanajuato, Mexico
• Coordinates
  • Lat. (^o): 21.7658
  • Long. (^o): -100.163
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002238	Metagenome / Metatranscriptome	579	Y
F002328	Metagenome	570	Y
F009290	Metagenome / Metatranscriptome	320	Y
F029033	Metagenome / Metatranscriptome	189	Y
F033294	Metagenome	177	Y
F034817	Metagenome	173	Y
F034980	Metagenome / Metatranscriptome	173	Y
F035162	Metagenome	172	Y
F039456	Metagenome	163	Y
F045048	Metagenome / Metatranscriptome	153	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0058703_1118953	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha	870
Ga0058703_1129722	Not Available	839
Ga0058703_1157940	Not Available	772
Ga0058703_1225347	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa	661
Ga0058703_1229149	Not Available	656
Ga0058703_1248143	All Organisms → cellular organisms → Bacteria	633
Ga0058703_1259736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	621
Ga0058703_1265026	Not Available	615
Ga0058703_1279913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	600
Ga0058703_1299276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	583

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0058703_1032252	Ga0058703_10322522	F102441	MALESPIVFGGITSQGCPIGRRGVLGVMLGFDPIYMKFGMEVEIDELNDFPKIRYNQLISYPVRSRTIKFS*
Ga0058703_1053889	Ga0058703_10538892	F102441	MRLIFGQSVDKLGLESPIVFNGIKLHRCPVGGQGLLRVMSDFSRIDMKFGMYVEFDALNDYLKMGCDELISYHIEARTKNQSTLFTCEYDNGRCN*
Ga0058703_1054935	Ga0058703_10549352	F102440	MGRNTGRGKVAYNWISPDPAKAGPTLGVVVVVVDSRIQYTE*
Ga0058703_1066368	Ga0058703_10663683	F102441	MAFGAIKFQECPIGGRGVLEVMSDFSPIDMKFGMEVKFDVLNGYPKFGYDQLISGSVGGRAKNSANAYPVSDR*
Ga0058703_1078336	Ga0058703_10783361	F102441	VESPIVFGGIKWHGCLIRGRGVLGVMSDFGPINMKFGTMVEIDRLNDCPKLSFHQLISCPVKGRTKKFS*
Ga0058703_1078336	Ga0058703_10783362	F102441	MKLILGQPVDQIAVESPIVFGGIKWHGCLIGGRGVLGVMSDFGPIDMKFGTEVEIDGLNDHPKFGRHQLISCSVRGRIKKFNCPFWG*
Ga0058703_1113760	Ga0058703_11137601	F102441	LISGESVDEIAVESPIVFGGIKLHRCPVGG*GVLGVMSDFGSIDMKFSMEVEFDASNNYPKFGFDQLISCPEGALQTNSANPLPLCPR*
Ga0058703_1113760	Ga0058703_11137602	F102441	MKLIFDQSVDKITVESPIVFGGIKLHRCPLEG*GVLGVRSDFGPIDMKFSIEVEFDASNDYPKFGFDQLISCPVGALTKKFS*
Ga0058703_1115365	Ga0058703_11153652	F102441	MKLIFGQPVDKMVVESPIVFGGIKSHGYSVGGRGVLGVMLDFYPIYMKSSIEVEIDVLNDYPKFGCDQLISCLVGGHTKKFSKYFSLVRSIKVDVIVK*
Ga0058703_1115365	Ga0058703_11153653	F102441	PVDKMVVESPIVFGGIKSHGCSVEGRGVLGVMLDFYPIYMKFGMEVEFDEINDFLKFGCNQLITHPVRARTKKFR*
Ga0058703_1117579	Ga0058703_11175791	F102441	MKLIFGQPVDKIVVKSPIVFGSIKSHRCPVGGRGVFGVMLDFDLIYMKFNMCVEFYELNDFPKFGYNQLISCAVRARTKKFS*
Ga0058703_1117579	Ga0058703_11175792	F102441	MKLIFGQPVDKMAVESPIVFGSLNSHGCPVGGRGILGVMLDFDPIYMKFSMVVEFDELNDFPKFGYNQLISCAVTARTKKFS*
Ga0058703_1118953	Ga0058703_11189532	F039456	ENTTFAYSNEFKDYIKVDRAESEDIFYYLFDVGAEKFLSEEGKKYLLELFEEYDPEHLNQINEEFDEYLNNDGLEDNWR*
Ga0058703_1119440	Ga0058703_11194402	F102441	MRLIFGQSVDKIAVEIPIVLGDIKLQRCHIGGRGVLGVMPDFDPIDMESGMEIEFDELNHYPKFGSDQLISCPVRAPAKKFS*
Ga0058703_1122967	Ga0058703_11229671	F102441	MRLILGQSIDKMAVENPFVFGGLKSHRCPVGGRGVLGVVSDFDPIDMKFSMEVEFDALNDYPKFGCNKLIRCPVRARTKKFS*
Ga0058703_1122967	Ga0058703_11229672	F102441	MRLILGQSVDKMAVGSPIVFGGLKSHRCPVGGRGVLEVMSDFGPIDMKFGVEVEFNELNDYPKFDSDQLISYPVRAWTKKFS*
Ga0058703_1129722	Ga0058703_11297222	F063057	EKGMFRRRRGNHHEEAQEKKGSHEPGVVSWQEAAFRLLVFELVSVGIPLLLLRLIYKLLTRSS*
Ga0058703_1134860	Ga0058703_11348602	F102441	MKLIFGQPVDKIAVESPIVFGGITLHECLEGRRGVLVVMSDFDLIYMKFGVEVDFDELNDFPKFGDVQLISCPLLARTKKFS*
Ga0058703_1145205	Ga0058703_11452051	F102441	MRLIIGQPVDKIVVESPIVFGGIRSHKYPVGGSGVLGVMLDFDPIYLKFGMAKEFDILNDFQKFGRIQLISCLVGARTKKFS*
Ga0058703_1157940	Ga0058703_11579401	F088163	VNVIPIYDHSMYYWFVRANIEPSLVVGWLEVELLSGLRFLWSVLREEGDRVVNCHNHVDCEAVGGLMSCDMKCMNVLCVNPFSPICYMTLCD*
Ga0058703_1161407	Ga0058703_11614072	F102441	MTLIFGQPVDKIAVESPIVFGGIKLHECPIGGRGILGVMSDFGPIDMKFGIEVEFDELSENPKFGCDQLISCPVGAQTNKFS*
Ga0058703_1173810	Ga0058703_11738101	F102441	LIFGQPIEKIAFKSPIVFGGIKLHECSIGGRGVLGVMLDFDLIYTKFGMEVEYDVLKDFPKFGCNQLITCLVGARTKKFS*
Ga0058703_1176480	Ga0058703_11764802	F102441	MKLIFGQPVDKMAVESPIVFGSIKSHECPVEGRGILGVMLDFDRIYMKFSMEVDFDELNDFPKFGYNQLIRCPVRACTKKFS*
Ga0058703_1176480	Ga0058703_11764803	F102441	MKLIFGQSVDKMAVESPIVFGGIKLHRCLVGGRGVLGVMSDFCPIDMKFGMDVEFDALKDYPKFGCDQLIRCLVRARTKKFS*
Ga0058703_1186342	Ga0058703_11863421	F102441	MILIFGQSVDKMAGENPIVFCGIKSHRCPVGGQGVLGVMSDYGPIDMKFGIEVEFDALKDYPKFGCDKLISCPVMARTKKFS*
Ga0058703_1186342	Ga0058703_11863422	F102441	MRLIFGQSVDKMAGKNPIVFGGIKSHRCPVGERGVLGVMPDFDQIDMKFGMEVEFDALRDYPKFGCDKFISCLVGAPAKKFS*
Ga0058703_1189459	Ga0058703_11894592	F102441	MRLIFGQSVDKMAGENPIIFGVIKSHRCPVGGRGVLGVMSDFGPIDMKFDREVEFDALKDYPKFGSDQLICCPVRARTKKFS*
Ga0058703_1196721	Ga0058703_11967211	F102441	MKLILGQPVDKIAIKSPIVFGGLKSHGFPIGG*GVLGVMSDFNLIDMKFGMKVRIDALNDYPKFGYDQLISCVVRAPAKNSANP*
Ga0058703_1204185	Ga0058703_12041852	F102441	MRLISDQSIDKIEVENPIVFGGIKSHRCPIGCRVVLGVVSGFGPIDVEFSMDVEFDALKDYPKFGCDQLIGCLVRAQTKNFPNPLPFDTR*
Ga0058703_1209111	Ga0058703_12091112	F102441	MRLIFGQSVDKMAVESPIVFGGIKLYGCSFGRQGVLGVMLDFYLIYMKFSMEVEIDVLNDYPKFGCDQLISCLVGGHTK*
Ga0058703_1215017	Ga0058703_12150171	F102441	MKLIFGQPVDKIAVESPIVFGGIKSHGCSVGGRGVLGVMLDFNPIYMKFSMEVYFDELNDFPKFGYNQLSSCVVRARTKKFN*
Ga0058703_1215017	Ga0058703_12150172	F102441	MKLIFGQPVDKMAVESPIVFGGIKSHGCSVGGRGVLGVMLDFDPIYIKFSMEVDFDELNDLPKFGYNQLISCPVRARTNKFS*
Ga0058703_1220346	Ga0058703_12203461	F102441	MKLIFGQPVDKIGIKSPIVFSGIKSHECPVGGRGILGIMFDFNLIYMKFGMGVAFDRFNNVPKFGCDQLINFPIRAPTKKFS*
Ga0058703_1225347	Ga0058703_12253472	F035162	MRYLENYIAEFSEYYYKIGHNEANLGMFYDKLPYPINCIINEKYMVWFERTDVVDSLGSRISY
Ga0058703_1226683	Ga0058703_12266832	F102441	MKLIFGQLVDKMAIESPIVFCGIKSHGCAVGGRGVLGVMFGFDPIYTKFGMEVEFDELNDFPKYGYN*
Ga0058703_1229149	Ga0058703_12291491	F045048	VFNNGSSKALIASIPNGGHCAPNSTVGDNALWKYAQNIAKKNNPSDTINRATPMLRPLCTASV*
Ga0058703_1231466	Ga0058703_12314661	F102441	MKFILGQPVDKMAVESPIVFGSIKSHGFPVRGRGVLGVMLDFDSIHMKFSMEVDSDEFNDFSKFGYNQLISCPVRARTKKFS*
Ga0058703_1248143	Ga0058703_12481432	F104066	MFGFGAAASTAEDHQQALDDVVPAVLAQVGERPDLVVCFLSMEHAEAAAGIA
Ga0058703_1257244	Ga0058703_12572442	F102441	MKLIFGQPVDKMAVKSPIVFGGIKLHWCSVGGRGVLGVMLDFYLIYMKFSTDVEFDELNDFPKFGCDQIITRPVSARTKKFS*
Ga0058703_1259736	Ga0058703_12597362	F002328	MDKASVAYVLCRIEDDSSLTPVSRHGDILTGIAAAGYAVEVEDPDFSYALYSGDPANGSATRVASFREGRIGYRLWALRTGRISPSVEDRYDHDV
Ga0058703_1265026	Ga0058703_12650261	F057856	MGLAQLNYKISNLGPNKYLDYFHVQILAILPTHTRQLTYPLSISQLPIKTDESSFEHFIEHLAGVKENSKF*
Ga0058703_1279913	Ga0058703_12799131	F029033	MDPEERWGHDPKLEALLGAQGATALRAMLDCFPEPVGLLWAIRDDEGRLVDFSFGYGNPVIMRLFRLPASMRDRYTLLEALPQMRGSEAMDAYVRAVDGGEAFVADVSY
Ga0058703_1291367	Ga0058703_12913671	F054614	MSLTLTLTGKSTVLAVNYFPPIDLSDDDYELGLMDFETYYTIPNVNASNNKFYFGDDVEITIPEGSYELQAIN
Ga0058703_1292732	Ga0058703_12927321	F102441	MKLIFGQPVDKMAVESPIVFGSLKPHRCPVGGRGVLRVILDFDPIFMKFSMDVDVDELNDFPKFDYNQLISCPVRARTKKFS*
Ga0058703_1292732	Ga0058703_12927322	F102441	MKLIFGQPIDKMAIESSIVFGSIKWRGCPVAGQGVLGVMLDFDPIYMKFTMEVDFDELNDLPKFGYNQLISCPVRACTKKFS*
Ga0058703_1299276	Ga0058703_12992761	F009290	MAEAQRDSFEAVAENLAAAQRRSIGLAEGGLEFMKLQEQNARAAQEFFASGVRLLQHQQKNAEFVQGWMGEALEVVREQTEHNARTAEAFARSVSSQQESIRTLTRDWVGAYRDFFSPFAYFQEGMRTFQRATQQGLEATEQVARQGLRASEEAARQGLRVAEEATERTDKVLRQTEKVTREAELRTAVL
Ga0058703_1318460	Ga0058703_13184601	F102441	MKLIFGQPVDKMAVETPIVFKGIRSHGCSVGRRGILEVMLDFYPIYMKFSMDEEFDELNDFPKFGCNQLITRPVRARTKKFS*
Ga0058703_1321972	Ga0058703_13219721	F102441	MAVGSPIVFGSIKPRRFPVGGRGVLGVMLDFDLIYVKFSMEVDFDELNDFPKFGYNQLISCLVRARTKKFN*
Ga0058703_1325893	Ga0058703_13258931	F060565	NLLMVIIKVELLPENEEIQYEMTLPLERVTPSSKVLIDNLKFHIKSISCFGLLSSAYLIAQRFFPSRVTS*
Ga0058703_1336916	Ga0058703_13369162	F102441	MKLIFSKPVNEIAVESPIVFGSIKLHDCPVGGRGVLGVMSDFDPIYTKFGVEVEFDVLNDYSKFDSDQLISCPVGAP
Ga0058703_1340640	Ga0058703_13406401	F102441	MRLIFGQPVDKIAVESPIVFGGIRLHEYLEGRRGVLVVMSDFDLIYMKFGVEVDFDELNDFPKFGDGQLISCPLLAHTKKFS*
Ga0058703_1341304	Ga0058703_13413041	F102441	MRLILDQSVDKIAVENPIVFGGLKSHWCPVGGRGVLGALSDFDPIDMKFDMEVEFDALKDYPKFGCNKLISCPVGAPAKNSANPLPLRAR*
Ga0058703_1347325	Ga0058703_13473252	F102441	MKLIFGQSVDKMAVESPIVFGGIKLHRCPVGGRGVLGVMSDFGPIDMKFGMEVEFDALKDYPKFGCDQLIRCPVRARTKKFS*
Ga0058703_1350583	Ga0058703_13505832	F102441	MRLIFGQPIEKMAIESPIVFGGIKLHGCSVGGQGVLGVMLDFYPIYMKFGMEVEFDELNDFPKFGSYLLITCLVRAHKKNQLTLYPCMRDNS*
Ga0058703_1358416	Ga0058703_13584161	F102441	PVDKIAVESPIVFGGIKSHGCSVGGRGVLGVMLDFNTIYMKFSMEVDFDELNDFPKFGYNQLSSCAVRAHTKKFS*
Ga0058703_1361848	Ga0058703_13618482	F075613	AIEMICQFNKLKPPKFGGGTDPIVYEEWLRRMENLFEIMECPERFKVRLPTYQFEKEAELW*
Ga0058703_1372877	Ga0058703_13728772	F102441	MKFIFGQPIDKMAVESPIVFGGIKLHGCPVGGRGVLEVMLGFDPIYMKFGMEVEFDELNDFPKFGYNQLISYPVGARTKKFS*
Ga0058703_1378799	Ga0058703_13787992	F102441	MRLIFGQPVDKIEVESPIVFGGIQSHRFLVRRRGVLGVMSDFGRIDMKFSMEVEFYKLNDYPKFGCDELISYPVRDHTKKFRERFSLVPAITVDVIVP*
Ga0058703_1380344	Ga0058703_13803441	F102441	MRLIFGQPVDKIAVESPIVFGGTKLHRCPIGGRRVLGIMTDFGPIDMKCGMEVEFDILNDNPKFGCDQLISCLVGARTKNSANAFLVSDR*
Ga0058703_1381298	Ga0058703_13812981	F102441	SPIVFGGIKSHGCSVGGRGVLGVMLDFYLTYMTFGMEVEFDEVNDFPKFGCNQLITRPVRARTKKFS*
Ga0058703_1381298	Ga0058703_13812982	F102441	MKLNFGQPVDKMAVESPIVFDGIKLHGCSLGGRGVLGVMLDFYPIYKKFGTEVEFVELNDFPKFSCVRVISYPVGARTKKFS*
Ga0058703_1389578	Ga0058703_13895782	F075613	AMEMICQFNRLKPPKFEGGTDPMVYEEWLRRMENSFEIMECPERVKVHIAAYQFEKEVEFWCGTMKPRVGEPVT*
Ga0058703_1393190	Ga0058703_13931901	F088163	MYDCFVYCWFVHVNIEPRLVVGWFEVELLSCSRFLWSVLCEEGDRVVNCCNRVNYEAMCGLMSCDAKCMNVLCVNPFS
Ga0058703_1395159	Ga0058703_13951592	F033294	MNSVLNLNTIWTASNFLNYIEHSFSGTVADWYDSLSEDGKNTLRTMKTPAAMFRSLCKEIETEFIETKVDSEEKAREWQRKIN
Ga0058703_1399155	Ga0058703_13991551	F002238	LTGCLPRGTTLRMTDKAAEITPEFLRGWNAALLAARQWHESQAKKTLIQAGRSRFPKTLEREAEVHQLSAERIVLLGPDDA*
Ga0058703_1399720	Ga0058703_13997201	F034980	VKQISKLDKTSLAIDRQKVARARQILGTRTMASTVDAALDEVINLARRRRVMERIRRSKSDGVGPSPAELRRLREP*
Ga0058703_1412476	Ga0058703_14124761	F102441	MRLIFGQSVDKMAVENPIVFGGIKSHRCPVGGRGVLGVMSDSGPIDMKFDIEVKFDALKDYPKFSCDKLISCPVKARTKNSANPLPIRA*
Ga0058703_1413168	Ga0058703_14131681	F102441	MKLIFDQPVDKMGVESPIVFGGIKSHRCPVGGRGVLGVILDFESIYMKFGMELEYDELNNFPKFGYNQ
Ga0058703_1415290	Ga0058703_14152901	F102441	MRLIFVQSVDKIAVKSPIVFGGIKLHRCPVGGRGIFGVMSDFGSIDMKFSMGVEFDALNDYPKFGSDQLISCLVGASAKKFS*
Ga0058703_1415944	Ga0058703_14159441	F102441	MKLIFGQPVDKIAVESPIVFGGIKSHGCSVGRQGFLGVILDFHPIYMRFSMDIEFDELNDFPKFGCDQLIILPVRARTKKFS*
Ga0058703_1416671	Ga0058703_14166711	F034817	VQRFPEQQIVLTCEECAEKLIILGPEEDWRSRRAVFVCEEGHKLTLDGHADDEVLAAS*