NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300009040

3300009040: Agave microbial communities from Guanajuato, Mexico - Mg.Ma.e



Overview

Basic Information
IMG/M Taxon OID3300009040 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053055 | Gp0104155 | Ga0058703
Sample NameAgave microbial communities from Guanajuato, Mexico - Mg.Ma.e
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size543108034
Sequencing Scaffolds17
Novel Protein Genes71
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha2
Not Available9
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa1
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rhamnaceae → Paliureae → Ziziphus → Ziziphus jujuba1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAgave Microbial Communities From California, Usa, And Mexico
TypeHost-Associated
TaxonomyHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave → Agave Microbial Communities From California, Usa, And Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant surface

Location Information
LocationGuanajuato, Mexico
CoordinatesLat. (o)21.7658Long. (o)-100.163Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002238Metagenome / Metatranscriptome579Y
F002328Metagenome570Y
F009290Metagenome / Metatranscriptome320Y
F029033Metagenome / Metatranscriptome189Y
F033294Metagenome177Y
F034817Metagenome173Y
F034980Metagenome / Metatranscriptome173Y
F035162Metagenome172Y
F039456Metagenome163Y
F045048Metagenome / Metatranscriptome153Y
F054614Metagenome / Metatranscriptome139Y
F057856Metagenome135Y
F060565Metagenome132Y
F063057Metagenome130Y
F075613Metagenome118Y
F088163Metagenome109Y
F102440Metagenome101Y
F102441Metagenome101Y
F104066Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0058703_1118953All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha870Open in IMG/M
Ga0058703_1129722Not Available839Open in IMG/M
Ga0058703_1157940Not Available772Open in IMG/M
Ga0058703_1225347All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Chenopodiaceae → Chenopodioideae → Atripliceae → Chenopodium → Chenopodium quinoa661Open in IMG/M
Ga0058703_1229149Not Available656Open in IMG/M
Ga0058703_1248143All Organisms → cellular organisms → Bacteria633Open in IMG/M
Ga0058703_1259736All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae621Open in IMG/M
Ga0058703_1265026Not Available615Open in IMG/M
Ga0058703_1279913All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia600Open in IMG/M
Ga0058703_1299276All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans583Open in IMG/M
Ga0058703_1325893Not Available561Open in IMG/M
Ga0058703_1361848All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → Caryophyllales → Cactineae → Cactaceae → Opuntioideae → Opuntia → Opuntia streptacantha535Open in IMG/M
Ga0058703_1389578All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Rosales → Rhamnaceae → Paliureae → Ziziphus → Ziziphus jujuba517Open in IMG/M
Ga0058703_1393190Not Available515Open in IMG/M
Ga0058703_1395159Not Available514Open in IMG/M
Ga0058703_1399155Not Available511Open in IMG/M
Ga0058703_1416671Not Available501Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0058703_1032252Ga0058703_10322522F102441MALESPIVFGGITSQGCPIGRRGVLGVMLGFDPIYMKFGMEVEIDELNDFPKIRYNQLISYPVRSRTIKFS*
Ga0058703_1053889Ga0058703_10538892F102441MRLIFGQSVDKLGLESPIVFNGIKLHRCPVGGQGLLRVMSDFSRIDMKFGMYVEFDALNDYLKMGCDELISYHIEARTKNQSTLFTCEYDNGRCN*
Ga0058703_1054935Ga0058703_10549352F102440MGRNTGRGKVAYNWISPDPAKAGPTLGVVVVVVDSRIQYTE*
Ga0058703_1066368Ga0058703_10663683F102441MAFGAIKFQECPIGGRGVLEVMSDFSPIDMKFGMEVKFDVLNGYPKFGYDQLISGSVGGRAKNSANAYPVSDR*
Ga0058703_1078336Ga0058703_10783361F102441VESPIVFGGIKWHGCLIRGRGVLGVMSDFGPINMKFGTMVEIDRLNDCPKLSFHQLISCPVKGRTKKFS*
Ga0058703_1078336Ga0058703_10783362F102441MKLILGQPVDQIAVESPIVFGGIKWHGCLIGGRGVLGVMSDFGPIDMKFGTEVEIDGLNDHPKFGRHQLISCSVRGRIKKFNCPFWG*
Ga0058703_1113760Ga0058703_11137601F102441LISGESVDEIAVESPIVFGGIKLHRCPVGG*GVLGVMSDFGSIDMKFSMEVEFDASNNYPKFGFDQLISCPEGALQTNSANPLPLCPR*
Ga0058703_1113760Ga0058703_11137602F102441MKLIFDQSVDKITVESPIVFGGIKLHRCPLEG*GVLGVRSDFGPIDMKFSIEVEFDASNDYPKFGFDQLISCPVGALTKKFS*
Ga0058703_1115365Ga0058703_11153652F102441MKLIFGQPVDKMVVESPIVFGGIKSHGYSVGGRGVLGVMLDFYPIYMKSSIEVEIDVLNDYPKFGCDQLISCLVGGHTKKFSKYFSLVRSIKVDVIVK*
Ga0058703_1115365Ga0058703_11153653F102441PVDKMVVESPIVFGGIKSHGCSVEGRGVLGVMLDFYPIYMKFGMEVEFDEINDFLKFGCNQLITHPVRARTKKFR*
Ga0058703_1117579Ga0058703_11175791F102441MKLIFGQPVDKIVVKSPIVFGSIKSHRCPVGGRGVFGVMLDFDLIYMKFNMCVEFYELNDFPKFGYNQLISCAVRARTKKFS*
Ga0058703_1117579Ga0058703_11175792F102441MKLIFGQPVDKMAVESPIVFGSLNSHGCPVGGRGILGVMLDFDPIYMKFSMVVEFDELNDFPKFGYNQLISCAVTARTKKFS*
Ga0058703_1118953Ga0058703_11189532F039456ENTTFAYSNEFKDYIKVDRAESEDIFYYLFDVGAEKFLSEEGKKYLLELFEEYDPEHLNQINEEFDEYLNNDGLEDNWR*
Ga0058703_1119440Ga0058703_11194402F102441MRLIFGQSVDKIAVEIPIVLGDIKLQRCHIGGRGVLGVMPDFDPIDMESGMEIEFDELNHYPKFGSDQLISCPVRAPAKKFS*
Ga0058703_1122967Ga0058703_11229671F102441MRLILGQSIDKMAVENPFVFGGLKSHRCPVGGRGVLGVVSDFDPIDMKFSMEVEFDALNDYPKFGCNKLIRCPVRARTKKFS*
Ga0058703_1122967Ga0058703_11229672F102441MRLILGQSVDKMAVGSPIVFGGLKSHRCPVGGRGVLEVMSDFGPIDMKFGVEVEFNELNDYPKFDSDQLISYPVRAWTKKFS*
Ga0058703_1129722Ga0058703_11297222F063057EKGMFRRRRGNHHEEAQEKKGSHEPGVVSWQEAAFRLLVFELVSVGIPLLLLRLIYKLLTRSS*
Ga0058703_1134860Ga0058703_11348602F102441MKLIFGQPVDKIAVESPIVFGGITLHECLEGRRGVLVVMSDFDLIYMKFGVEVDFDELNDFPKFGDVQLISCPLLARTKKFS*
Ga0058703_1145205Ga0058703_11452051F102441MRLIIGQPVDKIVVESPIVFGGIRSHKYPVGGSGVLGVMLDFDPIYLKFGMAKEFDILNDFQKFGRIQLISCLVGARTKKFS*
Ga0058703_1157940Ga0058703_11579401F088163VNVIPIYDHSMYYWFVRANIEPSLVVGWLEVELLSGLRFLWSVLREEGDRVVNCHNHVDCEAVGGLMSCDMKCMNVLCVNPFSPICYMTLCD*
Ga0058703_1161407Ga0058703_11614072F102441MTLIFGQPVDKIAVESPIVFGGIKLHECPIGGRGILGVMSDFGPIDMKFGIEVEFDELSENPKFGCDQLISCPVGAQTNKFS*
Ga0058703_1173810Ga0058703_11738101F102441LIFGQPIEKIAFKSPIVFGGIKLHECSIGGRGVLGVMLDFDLIYTKFGMEVEYDVLKDFPKFGCNQLITCLVGARTKKFS*
Ga0058703_1176480Ga0058703_11764802F102441MKLIFGQPVDKMAVESPIVFGSIKSHECPVEGRGILGVMLDFDRIYMKFSMEVDFDELNDFPKFGYNQLIRCPVRACTKKFS*
Ga0058703_1176480Ga0058703_11764803F102441MKLIFGQSVDKMAVESPIVFGGIKLHRCLVGGRGVLGVMSDFCPIDMKFGMDVEFDALKDYPKFGCDQLIRCLVRARTKKFS*
Ga0058703_1186342Ga0058703_11863421F102441MILIFGQSVDKMAGENPIVFCGIKSHRCPVGGQGVLGVMSDYGPIDMKFGIEVEFDALKDYPKFGCDKLISCPVMARTKKFS*
Ga0058703_1186342Ga0058703_11863422F102441MRLIFGQSVDKMAGKNPIVFGGIKSHRCPVGERGVLGVMPDFDQIDMKFGMEVEFDALRDYPKFGCDKFISCLVGAPAKKFS*
Ga0058703_1189459Ga0058703_11894592F102441MRLIFGQSVDKMAGENPIIFGVIKSHRCPVGGRGVLGVMSDFGPIDMKFDREVEFDALKDYPKFGSDQLICCPVRARTKKFS*
Ga0058703_1196721Ga0058703_11967211F102441MKLILGQPVDKIAIKSPIVFGGLKSHGFPIGG*GVLGVMSDFNLIDMKFGMKVRIDALNDYPKFGYDQLISCVVRAPAKNSANP*
Ga0058703_1204185Ga0058703_12041852F102441MRLISDQSIDKIEVENPIVFGGIKSHRCPIGCRVVLGVVSGFGPIDVEFSMDVEFDALKDYPKFGCDQLIGCLVRAQTKNFPNPLPFDTR*
Ga0058703_1209111Ga0058703_12091112F102441MRLIFGQSVDKMAVESPIVFGGIKLYGCSFGRQGVLGVMLDFYLIYMKFSMEVEIDVLNDYPKFGCDQLISCLVGGHTK*
Ga0058703_1215017Ga0058703_12150171F102441MKLIFGQPVDKIAVESPIVFGGIKSHGCSVGGRGVLGVMLDFNPIYMKFSMEVYFDELNDFPKFGYNQLSSCVVRARTKKFN*
Ga0058703_1215017Ga0058703_12150172F102441MKLIFGQPVDKMAVESPIVFGGIKSHGCSVGGRGVLGVMLDFDPIYIKFSMEVDFDELNDLPKFGYNQLISCPVRARTNKFS*
Ga0058703_1220346Ga0058703_12203461F102441MKLIFGQPVDKIGIKSPIVFSGIKSHECPVGGRGILGIMFDFNLIYMKFGMGVAFDRFNNVPKFGCDQLINFPIRAPTKKFS*
Ga0058703_1225347Ga0058703_12253472F035162MRYLENYIAEFSEYYYKIGHNEANLGMFYDKLPYPINCIINEKYMVWFERTDVVDSLGSRISY
Ga0058703_1226683Ga0058703_12266832F102441MKLIFGQLVDKMAIESPIVFCGIKSHGCAVGGRGVLGVMFGFDPIYTKFGMEVEFDELNDFPKYGYN*
Ga0058703_1229149Ga0058703_12291491F045048VFNNGSSKALIASIPNGGHCAPNSTVGDNALWKYAQNIAKKNNPSDTINRATPMLRPLCTASV*
Ga0058703_1231466Ga0058703_12314661F102441MKFILGQPVDKMAVESPIVFGSIKSHGFPVRGRGVLGVMLDFDSIHMKFSMEVDSDEFNDFSKFGYNQLISCPVRARTKKFS*
Ga0058703_1248143Ga0058703_12481432F104066MFGFGAAASTAEDHQQALDDVVPAVLAQVGERPDLVVCFLSMEHAEAAAGIA
Ga0058703_1257244Ga0058703_12572442F102441MKLIFGQPVDKMAVKSPIVFGGIKLHWCSVGGRGVLGVMLDFYLIYMKFSTDVEFDELNDFPKFGCDQIITRPVSARTKKFS*
Ga0058703_1259736Ga0058703_12597362F002328MDKASVAYVLCRIEDDSSLTPVSRHGDILTGIAAAGYAVEVEDPDFSYALYSGDPANGSATRVASFREGRIGYRLWALRTGRISPSVEDRYDHDV
Ga0058703_1265026Ga0058703_12650261F057856MGLAQLNYKISNLGPNKYLDYFHVQILAILPTHTRQLTYPLSISQLPIKTDESSFEHFIEHLAGVKENSKF*
Ga0058703_1279913Ga0058703_12799131F029033MDPEERWGHDPKLEALLGAQGATALRAMLDCFPEPVGLLWAIRDDEGRLVDFSFGYGNPVIMRLFRLPASMRDRYTLLEALPQMRGSEAMDAYVRAVDGGEAFVADVSY
Ga0058703_1291367Ga0058703_12913671F054614MSLTLTLTGKSTVLAVNYFPPIDLSDDDYELGLMDFETYYTIPNVNASNNKFYFGDDVEITIPEGSYELQAIN
Ga0058703_1292732Ga0058703_12927321F102441MKLIFGQPVDKMAVESPIVFGSLKPHRCPVGGRGVLRVILDFDPIFMKFSMDVDVDELNDFPKFDYNQLISCPVRARTKKFS*
Ga0058703_1292732Ga0058703_12927322F102441MKLIFGQPIDKMAIESSIVFGSIKWRGCPVAGQGVLGVMLDFDPIYMKFTMEVDFDELNDLPKFGYNQLISCPVRACTKKFS*
Ga0058703_1299276Ga0058703_12992761F009290MAEAQRDSFEAVAENLAAAQRRSIGLAEGGLEFMKLQEQNARAAQEFFASGVRLLQHQQKNAEFVQGWMGEALEVVREQTEHNARTAEAFARSVSSQQESIRTLTRDWVGAYRDFFSPFAYFQEGMRTFQRATQQGLEATEQVARQGLRASEEAARQGLRVAEEATERTDKVLRQTEKVTREAELRTAVL
Ga0058703_1318460Ga0058703_13184601F102441MKLIFGQPVDKMAVETPIVFKGIRSHGCSVGRRGILEVMLDFYPIYMKFSMDEEFDELNDFPKFGCNQLITRPVRARTKKFS*
Ga0058703_1321972Ga0058703_13219721F102441MAVGSPIVFGSIKPRRFPVGGRGVLGVMLDFDLIYVKFSMEVDFDELNDFPKFGYNQLISCLVRARTKKFN*
Ga0058703_1325893Ga0058703_13258931F060565NLLMVIIKVELLPENEEIQYEMTLPLERVTPSSKVLIDNLKFHIKSISCFGLLSSAYLIAQRFFPSRVTS*
Ga0058703_1336916Ga0058703_13369162F102441MKLIFSKPVNEIAVESPIVFGSIKLHDCPVGGRGVLGVMSDFDPIYTKFGVEVEFDVLNDYSKFDSDQLISCPVGAP
Ga0058703_1340640Ga0058703_13406401F102441MRLIFGQPVDKIAVESPIVFGGIRLHEYLEGRRGVLVVMSDFDLIYMKFGVEVDFDELNDFPKFGDGQLISCPLLAHTKKFS*
Ga0058703_1341304Ga0058703_13413041F102441MRLILDQSVDKIAVENPIVFGGLKSHWCPVGGRGVLGALSDFDPIDMKFDMEVEFDALKDYPKFGCNKLISCPVGAPAKNSANPLPLRAR*
Ga0058703_1347325Ga0058703_13473252F102441MKLIFGQSVDKMAVESPIVFGGIKLHRCPVGGRGVLGVMSDFGPIDMKFGMEVEFDALKDYPKFGCDQLIRCPVRARTKKFS*
Ga0058703_1350583Ga0058703_13505832F102441MRLIFGQPIEKMAIESPIVFGGIKLHGCSVGGQGVLGVMLDFYPIYMKFGMEVEFDELNDFPKFGSYLLITCLVRAHKKNQLTLYPCMRDNS*
Ga0058703_1358416Ga0058703_13584161F102441PVDKIAVESPIVFGGIKSHGCSVGGRGVLGVMLDFNTIYMKFSMEVDFDELNDFPKFGYNQLSSCAVRAHTKKFS*
Ga0058703_1361848Ga0058703_13618482F075613AIEMICQFNKLKPPKFGGGTDPIVYEEWLRRMENLFEIMECPERFKVRLPTYQFEKEAELW*
Ga0058703_1372877Ga0058703_13728772F102441MKFIFGQPIDKMAVESPIVFGGIKLHGCPVGGRGVLEVMLGFDPIYMKFGMEVEFDELNDFPKFGYNQLISYPVGARTKKFS*
Ga0058703_1378799Ga0058703_13787992F102441MRLIFGQPVDKIEVESPIVFGGIQSHRFLVRRRGVLGVMSDFGRIDMKFSMEVEFYKLNDYPKFGCDELISYPVRDHTKKFRERFSLVPAITVDVIVP*
Ga0058703_1380344Ga0058703_13803441F102441MRLIFGQPVDKIAVESPIVFGGTKLHRCPIGGRRVLGIMTDFGPIDMKCGMEVEFDILNDNPKFGCDQLISCLVGARTKNSANAFLVSDR*
Ga0058703_1381298Ga0058703_13812981F102441SPIVFGGIKSHGCSVGGRGVLGVMLDFYLTYMTFGMEVEFDEVNDFPKFGCNQLITRPVRARTKKFS*
Ga0058703_1381298Ga0058703_13812982F102441MKLNFGQPVDKMAVESPIVFDGIKLHGCSLGGRGVLGVMLDFYPIYKKFGTEVEFVELNDFPKFSCVRVISYPVGARTKKFS*
Ga0058703_1389578Ga0058703_13895782F075613AMEMICQFNRLKPPKFEGGTDPMVYEEWLRRMENSFEIMECPERVKVHIAAYQFEKEVEFWCGTMKPRVGEPVT*
Ga0058703_1393190Ga0058703_13931901F088163MYDCFVYCWFVHVNIEPRLVVGWFEVELLSCSRFLWSVLCEEGDRVVNCCNRVNYEAMCGLMSCDAKCMNVLCVNPFS
Ga0058703_1395159Ga0058703_13951592F033294MNSVLNLNTIWTASNFLNYIEHSFSGTVADWYDSLSEDGKNTLRTMKTPAAMFRSLCKEIETEFIETKVDSEEKAREWQRKIN
Ga0058703_1399155Ga0058703_13991551F002238LTGCLPRGTTLRMTDKAAEITPEFLRGWNAALLAARQWHESQAKKTLIQAGRSRFPKTLEREAEVHQLSAERIVLLGPDDA*
Ga0058703_1399720Ga0058703_13997201F034980VKQISKLDKTSLAIDRQKVARARQILGTRTMASTVDAALDEVINLARRRRVMERIRRSKSDGVGPSPAELRRLREP*
Ga0058703_1412476Ga0058703_14124761F102441MRLIFGQSVDKMAVENPIVFGGIKSHRCPVGGRGVLGVMSDSGPIDMKFDIEVKFDALKDYPKFSCDKLISCPVKARTKNSANPLPIRA*
Ga0058703_1413168Ga0058703_14131681F102441MKLIFDQPVDKMGVESPIVFGGIKSHRCPVGGRGVLGVILDFESIYMKFGMELEYDELNNFPKFGYNQ
Ga0058703_1415290Ga0058703_14152901F102441MRLIFVQSVDKIAVKSPIVFGGIKLHRCPVGGRGIFGVMSDFGSIDMKFSMGVEFDALNDYPKFGSDQLISCLVGASAKKFS*
Ga0058703_1415944Ga0058703_14159441F102441MKLIFGQPVDKIAVESPIVFGGIKSHGCSVGRQGFLGVILDFHPIYMRFSMDIEFDELNDFPKFGCDQLIILPVRARTKKFS*
Ga0058703_1416671Ga0058703_14166711F034817VQRFPEQQIVLTCEECAEKLIILGPEEDWRSRRAVFVCEEGHKLTLDGHADDEVLAAS*

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