Metagenome Family F104066

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104066
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	56 residues
Representative Sequence	MLTFGAAVSTAPDHQQALDEVIPAALGQLGGAPDLVVCFFSMEHADAAAGIA
Number of Associated Samples	84
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	21.78 %
% of genes near scaffold ends (potentially truncated)	99.01 %
% of genes from short scaffolds (< 2000 bps)	93.07 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.396 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.832 % of family members)
Environment Ontology (ENVO)	Unclassified (25.743 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (27.723 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.00% β-sheet: 0.00% Coil/Unstructured: 70.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF13539	Peptidase_M15_4	54.46
PF00198	2-oxoacid_dh	2.97
PF08495	FIST	2.97
PF02817	E3_binding	1.98
PF04149	DUF397	0.99
PF01699	Na_Ca_ex	0.99
PF01594	AI-2E_transport	0.99
PF02720	DUF222	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0508	Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component	Energy production and conversion [C]	4.95
COG3287	FIST domain protein MJ1623, contains FIST_N and FIST_C domains	Signal transduction mechanisms [T]	2.97
COG4398	Small ligand-binding sensory domain FIST	Signal transduction mechanisms [T]	2.97
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.99
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.99
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.40 %
All Organisms	root	All Organisms	39.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.40 %
cellular organisms	root	All Organisms → cellular organisms	39.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.40 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	39.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.40 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	23.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.99 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.40 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	23.76 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.40 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.93 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.99 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.99 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.40 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.98 %
Cryptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales	0.99 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.99 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.99 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.40 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.99 %
Cryptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae	0.99 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.99 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.40 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.98 %
Cryptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium	0.99 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.99 %
Actinobacteria bacterium 21-73-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	0.99 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10665358	Not Available	715	Open in IMG/M
3300001431\|F14TB_100207479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1077	Open in IMG/M
3300003373\|JGI25407J50210_10032038	Not Available	1359	Open in IMG/M
3300003373\|JGI25407J50210_10104969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	698	Open in IMG/M
3300003373\|JGI25407J50210_10179419	Not Available	522	Open in IMG/M
3300004016\|Ga0058689_10147195	Not Available	540	Open in IMG/M
3300004463\|Ga0063356_100889636	Not Available	1256	Open in IMG/M
3300005981\|Ga0081538_10034918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3314	Open in IMG/M
3300006058\|Ga0075432_10545603	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300006852\|Ga0075433_10233413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1633	Open in IMG/M
3300006854\|Ga0075425_100694241	Not Available	1169	Open in IMG/M
3300007004\|Ga0079218_10496410	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300009040\|Ga0058703_1248143	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300009789\|Ga0126307_10067645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2808	Open in IMG/M
3300009789\|Ga0126307_10233813	Not Available	1477	Open in IMG/M
3300009800\|Ga0105069_1059002	Not Available	505	Open in IMG/M
3300009809\|Ga0105089_1050026	Not Available	646	Open in IMG/M
3300009810\|Ga0105088_1045144	Not Available	736	Open in IMG/M
3300009811\|Ga0105084_1077521	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300009815\|Ga0105070_1023057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1090	Open in IMG/M
3300009816\|Ga0105076_1006377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-73-9	1927	Open in IMG/M
3300009818\|Ga0105072_1044048	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300009820\|Ga0105085_1013205	Not Available	1422	Open in IMG/M
3300009820\|Ga0105085_1090983	Not Available	588	Open in IMG/M
3300009840\|Ga0126313_11089841	Not Available	656	Open in IMG/M
3300009840\|Ga0126313_11501433	Not Available	560	Open in IMG/M
3300010036\|Ga0126305_10626757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300010038\|Ga0126315_10165921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1315	Open in IMG/M
3300010038\|Ga0126315_10390559	Not Available	873	Open in IMG/M
3300010045\|Ga0126311_10588519	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	880	Open in IMG/M
3300010375\|Ga0105239_10723911	Not Available	1138	Open in IMG/M
3300010395\|Ga0058701_10808147	Not Available	512	Open in IMG/M
3300012206\|Ga0137380_10990868	Not Available	719	Open in IMG/M
3300012210\|Ga0137378_11800702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	516	Open in IMG/M
3300012350\|Ga0137372_10612699	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300012353\|Ga0137367_10137336	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1789	Open in IMG/M
3300012354\|Ga0137366_10215403	Not Available	1431	Open in IMG/M
3300012358\|Ga0137368_10746496	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300012358\|Ga0137368_10773966	Not Available	596	Open in IMG/M
3300012937\|Ga0162653_100050819	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300014965\|Ga0120193_10002201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1322	Open in IMG/M
3300018000\|Ga0184604_10031521	Not Available	1351	Open in IMG/M
3300018000\|Ga0184604_10098177	Not Available	903	Open in IMG/M
3300018028\|Ga0184608_10422016	Not Available	577	Open in IMG/M
3300018053\|Ga0184626_10059283	Not Available	1607	Open in IMG/M
3300018054\|Ga0184621_10104454	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300018061\|Ga0184619_10452235	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	573	Open in IMG/M
3300018071\|Ga0184618_10226993	Not Available	786	Open in IMG/M
3300018074\|Ga0184640_10199038	Not Available	904	Open in IMG/M
3300018075\|Ga0184632_10230479	Not Available	812	Open in IMG/M
3300018466\|Ga0190268_10222250	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300019377\|Ga0190264_10115806	Not Available	1298	Open in IMG/M
3300019767\|Ga0190267_10447835	Not Available	741	Open in IMG/M
3300021078\|Ga0210381_10198067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	699	Open in IMG/M
3300027056\|Ga0209879_1075099	Not Available	533	Open in IMG/M
3300027324\|Ga0209845_1016231	Not Available	1232	Open in IMG/M
3300027379\|Ga0209842_1026935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1093	Open in IMG/M
3300027490\|Ga0209899_1003946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3404	Open in IMG/M
3300027718\|Ga0209795_10161995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300027750\|Ga0209461_10119644	Not Available	615	Open in IMG/M
3300027809\|Ga0209574_10307362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	542	Open in IMG/M
3300027909\|Ga0209382_11167479	Not Available	790	Open in IMG/M
3300027961\|Ga0209853_1014313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium	2440	Open in IMG/M
3300028704\|Ga0307321_1027624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1020	Open in IMG/M
3300028705\|Ga0307276_10188192	Not Available	539	Open in IMG/M
3300028713\|Ga0307303_10048988	Not Available	891	Open in IMG/M
3300028796\|Ga0307287_10103356	Not Available	1075	Open in IMG/M
3300028799\|Ga0307284_10325065	Not Available	620	Open in IMG/M
3300028807\|Ga0307305_10309341	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300028812\|Ga0247825_10407549	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300028814\|Ga0307302_10205463	Not Available	961	Open in IMG/M
3300028814\|Ga0307302_10388741	Not Available	689	Open in IMG/M
3300028828\|Ga0307312_10409135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	891	Open in IMG/M
3300028872\|Ga0307314_10225506	Not Available	573	Open in IMG/M
3300028881\|Ga0307277_10019042	Not Available	2677	Open in IMG/M
3300028881\|Ga0307277_10448547	Not Available	578	Open in IMG/M
3300028884\|Ga0307308_10635072	Not Available	512	Open in IMG/M
3300028885\|Ga0307304_10112315	Not Available	1101	Open in IMG/M
3300028889\|Ga0247827_11224410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300030510\|Ga0268243_1013223	All Organisms → cellular organisms → Bacteria	1558	Open in IMG/M
3300030511\|Ga0268241_10005297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2365	Open in IMG/M
3300030516\|Ga0268255_10137321	Not Available	721	Open in IMG/M
3300031824\|Ga0307413_10250758	Not Available	1313	Open in IMG/M
3300031824\|Ga0307413_10761000	Not Available	810	Open in IMG/M
3300031824\|Ga0307413_11369774	Not Available	621	Open in IMG/M
3300031852\|Ga0307410_10084232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2241	Open in IMG/M
3300031852\|Ga0307410_10840195	Not Available	783	Open in IMG/M
3300031903\|Ga0307407_11487870	Not Available	535	Open in IMG/M
3300031911\|Ga0307412_11384147	Not Available	636	Open in IMG/M
3300031996\|Ga0308176_12555021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	544	Open in IMG/M
3300032002\|Ga0307416_102350708	Not Available	633	Open in IMG/M
3300032002\|Ga0307416_103025432	Not Available	562	Open in IMG/M
3300032004\|Ga0307414_11045127	Not Available	753	Open in IMG/M
3300032004\|Ga0307414_12055656	Not Available	533	Open in IMG/M
3300032005\|Ga0307411_10559579	Not Available	977	Open in IMG/M
3300032005\|Ga0307411_11378346	Not Available	645	Open in IMG/M
3300032126\|Ga0307415_100319720	Not Available	1293	Open in IMG/M
3300032126\|Ga0307415_100469686	Not Available	1092	Open in IMG/M
3300032159\|Ga0268251_10141595	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300034115\|Ga0364945_0287979	Not Available	511	Open in IMG/M
3300034151\|Ga0364935_0055461	Not Available	1162	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.33%
Host-Associated	Host-Associated	32.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.43%
Plants	Host-Associated → Plants	32.67%
Aquatic	Environmental → Aquatic	9.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.46%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.80%
Sediment	Environmental → Aquatic → Sediment	8.91%
Phylloplane	Host-Associated → Plants → Phylloplane	5.94%
Roots	Host-Associated → Plants → Roots	3.96%
Floodplain	Environmental → Terrestrial → Floodplain	1.98%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.98%
Freshwater	Environmental → Aquatic → Freshwater	0.99%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.80%
Sand	Environmental → Terrestrial → Soil → Sand	13.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	5.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	3.96%
Loam	Environmental → Terrestrial → Soil → Loam	1.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.98%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.98%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.99%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.99%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.80%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	13.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.91%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	5.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	3.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.97%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.98%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.98%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.99%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.99%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	14.85%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	13.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.91%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	7.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.93%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	5.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	3.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.98%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.98%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.99%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.99%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.99%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.99%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.99%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009040	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.e	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300009809	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010395	Agave microbial communities from Guanajuato, Mexico - Or.Ma.e	Host-Associated	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027324	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028872	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300030516	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_106653581	3300000550	Soil	MLTFGAAVSTASDHAQALDEVLPAALGQLGGAPDLVVCFFSMEHADAAGGIALSLSERTGTSAILG
F14TB_1002074791	3300001431	Soil	MLTFGAAVSTAPDHTNALDEVIPAALGQLGGAPDLVVCFFTMEHADAAAGIALSLSERTGTSAI
JGI25407J50210_100320381	3300003373	Tabebuia Heterophylla Rhizosphere	MLTFGAAVSTASDHAHALDEVLPVALGQLGGAPDLVVCFFSMEHAEAAGGIALSLS
JGI25407J50210_101049692	3300003373	Tabebuia Heterophylla Rhizosphere	MLTFGAAVSTAPDHAEALDEVIPDALGSLGGAPDLVVCFFSMEHAEAAGGIALSLSER
JGI25407J50210_101794192	3300003373	Tabebuia Heterophylla Rhizosphere	MLTFGAAYSTAPDHQRALDEAIPAALEQLSGTPDLVVCFFSMDHADAANGIALSLSERTGTSAIIGCTAQGVIGGR
Ga0058689_101471951	3300004016	Agave	MLTFGAAVSTAPDHTRALDEVIPAALGQLGDAPDLVVCFFSMEHAGAAAG
Ga0063356_1008896362	3300004463	Arabidopsis Thaliana Rhizosphere	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAATGIALSLSERTGTSAILGCTAQGVIGD
Ga0081538_100349184	3300005981	Tabebuia Heterophylla Rhizosphere	MLTFGAAISTAPDHQQALDEAIPAALDQLGDAPDLVVCFFSMEHAGAAAGIALSLS
Ga0075432_105456031	3300006058	Populus Rhizosphere	MLTFGAAVSTAPDHTNALDEVIPAALGQLGGAPDLVVCFFTMEHADAATGIALSLSERTGTSAILGCTAQGVIGD
Ga0075433_102334133	3300006852	Populus Rhizosphere	MLTFGAAVSTASDHQQALDEVIPAALDQLGGAPDLVVCFLSMEHAGAAAGIALSLSER
Ga0075425_1006942411	3300006854	Populus Rhizosphere	MLTFGAAVSTAPDHQQALDEVIPAALDQLGGAPDLVVCFFSMEHAGAAAGIALSLSERSGTSAILGCTAQGVIG
Ga0079218_104964102	3300007004	Agricultural Soil	MLTFGAAVSTAPDHATALDEVIPAALGQLGGAPDLVLCFFTMEHADAAAGIALSLSERT
Ga0058703_12481432	3300009040	Agave	MFGFGAAASTAEDHQQALDDVVPAVLAQVGERPDLVVCFLSMEHAEAAAGIA
Ga0126307_100676451	3300009789	Serpentine Soil	MLNFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAAAGIALSLSE
Ga0126307_102338131	3300009789	Serpentine Soil	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVC
Ga0105069_10590021	3300009800	Groundwater Sand	MLTFGAAVSTAPDHQRALDEAIPAALEQLSGTPDLVVCFFS
Ga0105089_10500261	3300009809	Groundwater Sand	MLTFGAAVSTASDHQRALDEAIPLALQQLSGTPDLVVCFFSMDHADAARGIALS
Ga0105088_10451441	3300009810	Groundwater Sand	MLTFGAAVSTASDHQRALDEAIPAALEQLRGTADLVVCFFSMDHADAAA
Ga0105084_10775211	3300009811	Groundwater Sand	MLTFGAAISTAPDHQQALDEVIPVALGQLGGAPDLVVCFFSMEHAEAAAGIALSLS
Ga0105070_10230572	3300009815	Groundwater Sand	MLAFGAAVSAASDHQRALDEAIPTAMAQLRAAPDLVVCFFSMKHAEAAADIALSLS
Ga0105076_10063771	3300009816	Groundwater Sand	MLTFGAAVSTAPDHQRALDEAIPAALQQLSGTPDLVVCFFSMDHADAARGIALSLSERTGTSAIIGCTAQG
Ga0105072_10440481	3300009818	Groundwater Sand	MLAFGATVSAASDHQRALDEAIPAAMAQLGAAPDLVVCFFSMEHAEVAAGIALSLSERTGSSAILA
Ga0105085_10132051	3300009820	Groundwater Sand	MLTFGAAVSTAPDHQRALDEAIPAALQQLSGTPDLVVCFFSMDHADAARGIALSLSERTGTSAIIG
Ga0105085_10909832	3300009820	Groundwater Sand	MLTFGAAVSTASDHQRALDEAIPLALQQLSGTPDLVVCFFSMDHADAARGIALSLSERTGTSAIIG
Ga0126313_110898412	3300009840	Serpentine Soil	MLTFGAAISTARDHAQALDEVIPAALEQVGGAPDLVVCFFSMEHAD
Ga0126313_115014333	3300009840	Serpentine Soil	MLTFGAAVSTAADHQRALDEAIPAALEQLSGTPDLVVCFFSMDHADAAHGIALSLSE
Ga0126305_106267572	3300010036	Serpentine Soil	MLTFGAAVSTAPDHQQALDEVIPAALGQLNGAPDLVVCFFTMEHADA
Ga0126315_101659211	3300010038	Serpentine Soil	MLTFGAAVSTAPDHQQALDEVIPAALGQLNGAPDLVVCFFSMEHAGAAAGIALSLSERTGTSAILGCTAQGVI
Ga0126315_103905592	3300010038	Serpentine Soil	MLTFGAAVSTAPDHAQALDEVLPVALGQLGGAPDLVVCFFSMEHADAAAGIALSLSERTGTSAILGCTAQGVI
Ga0126311_105885191	3300010045	Serpentine Soil	MLNFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAAAGIALSLSERTGTSAIVGCTARG*
Ga0105239_107239112	3300010375	Corn Rhizosphere	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADA
Ga0058701_108081471	3300010395	Agave	MLTFGAAVSTAPDHQQALDEVIPAALGQLGGAPDLVVCFFSMEHADAAAGIA
Ga0137380_109908682	3300012206	Vadose Zone Soil	MFGFGAAASTAPDHPQALDEVVPAVLGQVGEAPDLVVCFLSMD
Ga0137378_118007021	3300012210	Vadose Zone Soil	MFGFGAAASTAPDHQQALDEVVPAVLGQVGERPDLVVCFFSMEHAEAAAGISLGLSERT
Ga0137372_106126992	3300012350	Vadose Zone Soil	MFGFGAAVSTAADHQQALDEVVPAVLGQVGERPDLVVCFFSMEH
Ga0137367_101373361	3300012353	Vadose Zone Soil	MLGFGAAVSTAPDHRQALDEVVPAVLEQAGGGRPDLVVCFFSM
Ga0137366_102154032	3300012354	Vadose Zone Soil	MLEFGAAASTAVDHHQAIDEVVPSLLDQLGGAPDLVVCFFSMD
Ga0137368_107464961	3300012358	Vadose Zone Soil	MFGFGAAVSTAADHQQALDEVVPAVLGQVGERPDLVVCFFSMEHAEA
Ga0137368_107739663	3300012358	Vadose Zone Soil	VPTGSLWFILSFGAAFSTSSDHQRALDEAIPLALQQLSGTPDLVVCFFSMDHADAARGI
Ga0162653_1000508192	3300012937	Soil	MLTFGAAVSTAPDHQQALDEIIPAALAQLGGAPDLVVCFFSMEHAAAATGIALS
Ga0120193_100022011	3300014965	Terrestrial	MLTFGAAVSTAPDHQRALDEAIPAALEQLSGTPDLVVCFFSMHHADAAHGIALSLSERTGTSAI
Ga0184604_100315211	3300018000	Groundwater Sediment	MLTFGAAISTAPDHQQALDEVIPAALAQLGDAPDL
Ga0184604_100981772	3300018000	Groundwater Sediment	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAAAGIALSLSERTGTSAILGCTAQGV
Ga0184608_104220161	3300018028	Groundwater Sediment	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAATGIALSLSERTGTS
Ga0184626_100592833	3300018053	Groundwater Sediment	MLTFGAAVSTASDHQRALDEAIPAVLEQLSGTPDLVVCFFSMDHA
Ga0184621_101044542	3300018054	Groundwater Sediment	MLTFGAAVSTAPDHQQALDEVIPAALAQLGDAPDLVVCFFSMEHASAASGIALSLSERTGTSAIIGCTAQGVIG
Ga0184619_104522352	3300018061	Groundwater Sediment	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAATGIAL
Ga0184618_102269932	3300018071	Groundwater Sediment	MLTFGAAISTAPDHQQALDEVIPAALAQLGDAPDLVACFFSMEHASAASGIALSLSE
Ga0184640_101990381	3300018074	Groundwater Sediment	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCF
Ga0184632_102304791	3300018075	Groundwater Sediment	MLTFGAAVSTASDHQRALDEAIPAALEQLSGTPDLVVCFFSMDHADAARGIALSLSERTGTSAII
Ga0190268_102222502	3300018466	Soil	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAAAGIA
Ga0190264_101158061	3300019377	Soil	MLTFGAAVSTAPDHQQALDEVIPAALGQLGGAPDLV
Ga0190267_104478351	3300019767	Soil	MLTFGAAVSTAPDHQQALDEVIPAALDQLGGAPDLVVCFFSMEHADAAAGIALSLSERTGTAAILGCTAQGVI
Ga0210381_101980671	3300021078	Groundwater Sediment	MLTFGAAVSTAPDHQQALDEVIPAALDQLGGAPDLVVCFFSMEHAGAAAGISLSLSERTGTSAILGCTAQ
Ga0209879_10750992	3300027056	Groundwater Sand	MLTFGAAISTAPDHQQALDEIIPAALAQLGGAPDLVVCFFSMEHAAAATGIAL
Ga0209845_10162311	3300027324	Groundwater Sand	MLTFGAAVSTASDHQRALDEAIPLALQQLSGTPDLVVCFFSMDH
Ga0209842_10269351	3300027379	Groundwater Sand	MLAFGAAVSAASDHQRALDEAIPAAMAQLGAAPDLVVCFFSMEHA
Ga0209899_10039465	3300027490	Groundwater Sand	MLTFGAAVSTASDHQRALDEAIPAALEQLSGTPDLVACFFSMD
Ga0209795_101619952	3300027718	Agave	MLTFGAAVSTALDHQQALDEVIPAALDQLGGAPDLVVCFFSMEHAGAAAGIA
Ga0209461_101196441	3300027750	Agave	MLTFGAAVSTAPDHTRALDEVIPAALGQLGDAPDLVVCFFSMEHAGAAAGIALSLSERTGTSAILGCTAQGV
Ga0209574_103073621	3300027809	Agave	MLTFGAAVSTAPDHAQALDEVIPAALGQVGGAPDLVVCFFSMDHAGAAAGIALSLSERTG
Ga0209382_111674791	3300027909	Populus Rhizosphere	MFGFGAAASTAPDHQQALDEVVPAVLGQVGERPDLVVCFLSMEHAAA
Ga0209853_10143131	3300027961	Groundwater Sand	MLTFGAAVSTASDHQRALDEAIPAALEQLSGTPDLVACFFSMDHADAARGIALSLSERTG
Ga0307321_10276241	3300028704	Soil	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVICFFTMEHAD
Ga0307276_101881921	3300028705	Soil	MLTFGAAVSTAPDHQQALDEVIPAALDQLGGAPDLVVC
Ga0307303_100489881	3300028713	Soil	MLTFGAAISTAPDHQQALDEVIPAALAQLGDAPDLVVCFFSMEHASAAS
Ga0307287_101033561	3300028796	Soil	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAATGIALSLSERTGTSAI
Ga0307284_103250652	3300028799	Soil	MLTFGAAVSTAPDHQQALDEVIPAALAQLGDAPDLVVCFFSMEHASAAS
Ga0307305_103093411	3300028807	Soil	MLEFGAAASTAVDHLEAVDEVVPSVLDQLGGAPDLVVCFFS
Ga0247825_104075491	3300028812	Soil	MLTFGAAVSTAPDHQRALDEIIPAALAQLGGAPDLVVCFFSMEHAAAATGIALSLSERTGRPGCS
Ga0307302_102054631	3300028814	Soil	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAATGIA
Ga0307302_103887412	3300028814	Soil	MLEFAAAASTAVDHNEALDEIVPSLLGQLGGVPDLVVCFFSMDHAEAASGIALSLSERLGTSAIVGCTAQAVIGGRK
Ga0307312_104091352	3300028828	Soil	MLHFGAAVSTASDHQRALDEVVPAATADLDGAPDLAVCFFSMEHAGAASGIALSLSERL
Ga0307314_102255062	3300028872	Soil	MLTFGAAVSTAPDHANALDEVIPAALGQLGGAPDLVVCFFTMEHADAATGIALSL
Ga0307277_100190423	3300028881	Soil	MLTFGAAVSTAPDHQQALDEVIPAALAQLGDAPDLVVC
Ga0307277_104485471	3300028881	Soil	MLTFGAAISTAPDHTQALDEAIPAALAQLGDAPDLVVCFFSMEHAGAAGGIALSLSERTGTSAILGCTA
Ga0307308_106350721	3300028884	Soil	MLEFGAAASTAVDHLEAVDEVVPSVLDQLGGAPDLVVCFFSMDHAAAASGIALSLSERLGTSAIVGC
Ga0307304_101123151	3300028885	Soil	MLTFGAAVSTAPDHQQALDEVIPAALDQLGGAPDLVVCFFSMEHAGAAAGISL
Ga0247827_112244101	3300028889	Soil	MLTFGAAVSTAPDHQQALDEIIPAALAQLGGAPDLVVCFFSMEHAAAATGIALSLSERTGTSTPGS
Ga0268243_10132233	3300030510	Soil	MLTFGAAVSTAPDHANALDEVIPAALDQLGGAPDLV
Ga0268241_100052973	3300030511	Soil	MFGFGAAASTAEDHQQALDDVVPAVLAQVGERPDLVVCFFSMEHVEAAAGIALS
Ga0268255_101373213	3300030516	Agave	MLTFGAAVSTASDHQRALDEAIPAALQQLGGTPDLVVCFFSMEHAEAAAGIALSLSE
Ga0307413_102507582	3300031824	Rhizosphere	MLTFGAAISTASDHAQALDEVIPAALEQVGGPPDLVVCFFSMEHADAAGGIALSLSER
Ga0307413_107610001	3300031824	Rhizosphere	MLTFGAAVSTAPDHARALDEVIPAALGQLGGPPDLVLCFFTMEHADAAAG
Ga0307413_113697741	3300031824	Rhizosphere	MLTVGAAVSTARDHQRALDEAIPAALEQLRVPPDLVVCFFSMDHADAAAGIALSLSERTGTS
Ga0307410_100842323	3300031852	Rhizosphere	VLRFGAAYSTAGDHQQALDEVLPRVLGDLDGPPDLVVCFMSMHHADVAAGIALGLSERTGTSNLIGC
Ga0307410_108401952	3300031852	Rhizosphere	MLTFGAAISTASDHAQALDEVIPAALEQVGGSPDLVVCFFSMEHAEAAGGIALSLSERTGTAN
Ga0307407_114878701	3300031903	Rhizosphere	MLTVGAAVSTARDHQRALDEAIPAALEQLRVPPDLVVCFFSM
Ga0307412_113841471	3300031911	Rhizosphere	MLTVGAAVSTARDHQRALDEAIPAALEQLRVPPDLVVCFFSMDHADAAGGIA
Ga0308176_125550212	3300031996	Soil	MLTFGAAISTAPDHQEALDEAIPAALAQLGDAPDLVVCFFSMEHASAASGIALSLSERTG
Ga0307416_1023507081	3300032002	Rhizosphere	MLTFGAAVSTAPDHAQALDEVLPVALGQLGGAPDLVV
Ga0307416_1030254321	3300032002	Rhizosphere	MLTFGAAVSTAPDHANALDEVIPAALAQLGGAPDLVVCFFTMEHADAATGIALSLSERTGTSA
Ga0307414_110451272	3300032004	Rhizosphere	MLTFGAAISTARDHAQALDEVIPAALEQVGGAPDLVICFFSMEHADAAGGIALSLSERTG
Ga0307414_120556561	3300032004	Rhizosphere	MLTFGAAVSTASDHAQALDEVLPAALGQLGGAPDLVVCFFSM
Ga0307411_105595792	3300032005	Rhizosphere	MLTFGAAISTARDHAQALDEVIPAALEQVGGAPDLVVCFFSMEHADAASGIALSLSERTGTANILGCTAQGV
Ga0307411_113783462	3300032005	Rhizosphere	MLTFGAAISTASDHAQALDEVIPAALEQVGGPPDLVVCFFSMEHADAAGGIALSLSERTGTANI
Ga0307415_1003197202	3300032126	Rhizosphere	MLTFGAAVSTAPDHARALDEVIPAALGQLGGPPDL
Ga0307415_1004696862	3300032126	Rhizosphere	MLTFGAAISTASDHAQALDEVIPAALEQVGGPPDLVVCFFS
Ga0268251_101415951	3300032159	Agave	MLTFGAAVSTAPDHAQALDEVIPAALGQVGGAPDLVVCFFSMDHAGAAAGIALSLSERTGTSAILGCTAQGVIG
Ga0364945_0287979_359_511	3300034115	Sediment	MLTFGAAVSTAPDHQQALDEIIPAALAQLGGAPDLVVCFFSMEHAAAATGI
Ga0364935_0055461_1_171	3300034151	Sediment	MLTFGAAVSTAPDHHQALDEVIPAALGQLGGAPDLVVCFFTMEHADAAAGIALSLSE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104066

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences