3300009010: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-I

Overview

Basic Information

• IMG/M Taxon OID: 3300009010
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0084162 | Gp0116214 | Ga0075519
• Sample Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-I
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 70790116
• Sequencing Scaffolds: 16
• Novel Protein Genes: 19
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
Not Available	5
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Peptococcus → Peptococcus niger	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_65_63	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): polar biome → peatland → peat soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017668	Metagenome	239	Y
F021564	Metagenome	218	Y
F048266	Metagenome	148	N
F056711	Metagenome / Metatranscriptome	137	Y
F069483	Metagenome / Metatranscriptome	124	Y
F070687	Metagenome	123	Y
F072481	Metagenome / Metatranscriptome	121	Y
F073875	Metagenome / Metatranscriptome	120	Y
F078013	Metagenome	117	Y
F079367	Metagenome	116	Y
F080207	Metagenome	115	Y
F087945	Metagenome	110	N
F094068	Metagenome / Metatranscriptome	106	Y
F096256	Metagenome	105	N
F096999	Metagenome	104	N
F102122	Metagenome	102	N
F104110	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0075519_1000096	All Organisms → cellular organisms → Archaea → Euryarchaeota	7736
Ga0075519_1000684	Not Available	3208
Ga0075519_1002975	Not Available	1699
Ga0075519_1004791	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales → Methanosarcinaceae → Methanosarcina	1389
Ga0075519_1010413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptococcaceae → Peptococcus → Peptococcus niger	997
Ga0075519_1011609	Not Available	955
Ga0075519_1011950	All Organisms → cellular organisms → Archaea	943
Ga0075519_1013152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Poribacteria → unclassified Candidatus Poribacteria → Candidatus Poribacteria bacterium	905
Ga0075519_1014619	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium GWA2_65_63	865
Ga0075519_1026457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666
Ga0075519_1035014	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	589
Ga0075519_1036828	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	577
Ga0075519_1037348	Not Available	573
Ga0075519_1038634	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	565
Ga0075519_1040165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	556
Ga0075519_1046848	Not Available	520

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0075519_1000096	Ga0075519_10000963	F080207	MTTRKTSVVIALCFVLIGTLTATKAVTAASTDDSAFRRFDIAIGDYKYGELTIDPATDQFFAIANVGKGSADECVTLVAQKDGTSPQHISIAHSTVSTEGRVHWEGPLTTAQLDWINSYGYAAVFFARGAN*
Ga0075519_1000684	Ga0075519_10006845	F096256	MTSRKLLAVLAAAIVATVLTSGCLSSLTSRSSPTATPQNLSVSYDASFVLSGWHAISKFTQVTPKTYVGTYADEKGQSWNFTVQLFSAENTSYGRYFELMKKKSDEGYVKTNESKIALGTGQTVFGRIDERWYGYKASDSENPALYALLFGYDENAASWVVATVASGAIITTKTTTALS*
Ga0075519_1002975	Ga0075519_10029754	F079367	AKIKKMLTRGDVADDKFQHKDDIAWWMGRYETLITTEADAVVRKAMAKLNEAVALREEGINLVEQLDRDIIEAEHEVKRLGGDAFIENSEPMIKELKVYFDNLYESLKRPQPEEVEK*
Ga0075519_1004249	Ga0075519_10042491	F104110	DPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDATNKRVGVLDNFVASPEGALVVIEDAKGNALVGRYRDLDLTRLSKFAILKQLPAQDSFDEYLKDINRDAFLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
Ga0075519_1004791	Ga0075519_10047913	F080207	ITMRKTSIGVALCLVLIGTLTAITGVTAAPTDDSAIQRFDIAMGDYKYGKLTVDTETDQFVANAHVGKQSADEQVTLVARKDGASPHYVVIARSTVNDGGRVHWGGTLTEAQLDWIHSYGYGAVFFVRGNY*
Ga0075519_1010413	Ga0075519_10104131	F048266	MTIMAFAGGLLGLGNYVWDGWTMASGERNLYVPSNIVSVLLLVIAGSVAATMLLRDHGRMIEEERKEYRATLALSIAALVILSSWILFRAITTA*
Ga0075519_1011609	Ga0075519_10116092	F094068	MKKRKMQIWVLVSGMALVIGASIAVSVPPEVSAGTPCCSITAIDVKTGIVTAKNAETGKTFEFRLGNAAQIGNIKIGDQVSTDFQTREVTVHSFQPVDGILMIKPMPPPPIRKR*
Ga0075519_1011950	Ga0075519_10119503	F072481	MIPGSKQCDDMVARKNETKPPFRPDSESEKQVRCNHCGETYREKEIKWDTIREMWVCKNHPHCDGSVLNLDIRHIDY*
Ga0075519_1013152	Ga0075519_10131521	F056711	GDTIPLPFFDVPLRMRMKKLITVLAAAVFALSFMAGGCAKEKSSPQPQPAKMETPGTAKTAASKPKPRVRLFTGTVEALDEEAGTLVLKGPKGERRFQAQDQVKEQLDDLNIGEKVIVKHVDEIALSIVKPRTGKSALVWMEKTVPESEPAGS*
Ga0075519_1014189	Ga0075519_10141892	F104110	DPNIRYYFTQEDVLTSNERVVARSVGEFTDDTAKRSHFLCALYGVEVRDTTNKRVGVLDNFVAGPEGALVVIEDAKGNALVGRYRDLDLTRLSKFATLKQLPAQDSFDQYLKGMNKDALLTKGISCDLSSVAKDEGLLSRIRKKLAQSEEDRIITDQALID*
Ga0075519_1014619	Ga0075519_10146192	F021564	KSFVREGNAMEKKMTITVEIDGDRKEIVVRDSAGNTRHLKSVLVTGGGFEEGSLYLFGWGSCADLGWALAEGFRFSSVSPRSTDAFYQRVFAHLTRWIARFQGWALDQPMDPRLLLERWEAEDAAKSAEEAYGKNTN*
Ga0075519_1026457	Ga0075519_10264571	F073875	LAMRTEETIAAEKMRRKRIVAILGNCQDCGQPVIAGQEFLQSDNGIQHALCFYDPAYAKRVRELRPNTGQ*
Ga0075519_1029279	Ga0075519_10292791	F096999	VVQEQYVEPGRGRMLYPAAPIVGAVAGAAGVLVIISTFFSWISGSGVTGWSMMFRSGFGTSQNFLFSTGGSRIVFSGFWSLLFGVLIVAGAVTLITGWGGANGLVLTAGILGLIISVLSIVMLYTLKLQSLTPGAGLWMF
Ga0075519_1035014	Ga0075519_10350141	F087945	MGGVPAEIIGDRTADQPCDGWNPSDHPEFREFLDHVAEILAHEYVQRMRNTADPKDIEAWEKGGQ*
Ga0075519_1036828	Ga0075519_10368281	F069483	RWTVKHGIPRSRAVHAESHDLAIFSITETELMEKWRVPSERIRTASEIPIEVDLTDKDAIPVYMRISDKVLHLHRLGMTYTNIAERLGINPWMAKKAARWGNIQKA*
Ga0075519_1037348	Ga0075519_10373481	F078013	TERDDCNIDNIDEYHAMRDEALTNVKAPPPSEYDIAQFEEAFADNDGEYDYDGSERNAKQRALIWYSDTLYSASELSVIMPKVVPHYKEFDGVKTIQLLTGMYPEAYFLPSREYGVAIFVYPPNGTTALKKPNKIEMERLKADSYTIHVILREDKLIHVIELWFDAAKKL*
Ga0075519_1038634	Ga0075519_10386341	F017668	MNKGRLYEELIPNEQLSYKGYNTPELANARIKQILDEVKKEMPPFAEKWVNTENENPDWKATCEAMNERTLAREKWFLKWFGE*
Ga0075519_1040165	Ga0075519_10401652	F070687	MTVASLAWIAYKTGWYFYALGPQLVICMLLGYFAARKTAGDLLNWLVIGFFAALVPLAGILIMLGLWWHAG
Ga0075519_1046848	Ga0075519_10468481	F102122	MVRAKGRNHPYLELEGEALDNHMMAMHGWSMQMVAVKGTQTLAQKYNYIGEMHRREHHLPPHAVPVDED*