3300008695: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 1 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008695
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053020 | Ga0113557
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 1 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 152400028
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F040685	Metagenome	161	N
F042387	Metagenome	158	N
F084342	Metagenome	112	N
F090517	Metagenome	108	N
F097526	Metagenome	104	Y
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113557_100015	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	194668
Ga0113557_100065	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	97462
Ga0113557_100688	All Organisms → cellular organisms → Bacteria	22923
Ga0113557_107540	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3445
Ga0113557_109329	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2831
Ga0113557_124263	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1100
Ga0113557_136908	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	718
Ga0113557_141096	Not Available	644

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113557_100015	Ga0113557_100015116	F042387	MKRIILFFMAGVFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGYFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTRLNIDNQAVTTMVYEYNK*
Ga0113557_100065	Ga0113557_10006575	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEFSSFGGMALYSRQYTLNSLKKEFSKKLLMRQNKDLPEEISLPNTPENWEAFTKKINLDKFKKLKDGPSEQAVDGQDKVIIIKTNKKTYRKMNASGNDHDRETWYDLLQIIAKEFGKKSIYE*
Ga0113557_100688	Ga0113557_10068830	F018385	MMAEYENQWESYKELSIENDRDPVLDDPIIYGVNVKHFTLTIYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0113557_107540	Ga0113557_1075404	F098763	MDRRASLRILSPALYLATKLFKAVVRTMISYDPSDEVEGKGGMNAIPTTVDE*
Ga0113557_109329	Ga0113557_1093295	F098763	MDRRTSLRILSTALYLATKLFKAVVRTTISYDPSDEVEGKRGMNAVPTAGDGEAPGGL
Ga0113557_124263	Ga0113557_1242632	F084342	LGGYLAVPIRRPFFAQSLKKTLGQERGLGDAYDKDYQNEKALQWIHQRHILGICKEE*
Ga0113557_136908	Ga0113557_1369081	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVGVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL*
Ga0113557_141096	Ga0113557_1410961	F097526	RPADAPVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSRDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEIADIAPELAAIYLNGTGGEHLGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHTAAASGLAGTEAMQAAV