3300008565: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158499257 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008565
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052949 | Ga0111061
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 158499257 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 153708850
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F042387	Metagenome	158	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F059076	Metagenome	134	N
F071329	Metagenome	122	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F090517	Metagenome	108	N
F094006	Metagenome	106	Y
F097527	Metagenome	104	N
F105377	Metagenome	100	Y
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111061_1000095	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44012
Ga0111061_1000097	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	43825
Ga0111061_1000098	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43548
Ga0111061_1000121	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	40408
Ga0111061_1000157	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	35831
Ga0111061_1000198	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	31028
Ga0111061_1002211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7677
Ga0111061_1002333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	7414
Ga0111061_1002621	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	6939
Ga0111061_1005880	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4025
Ga0111061_1014279	All Organisms → Viruses	2090
Ga0111061_1034365	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	986
Ga0111061_1041722	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	819

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111061_1000095	Ga0111061_10000957	F036281	VITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNTKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREKDHWYTFRMSDAQKSTFTRHTTTNEKGHQTYDWVLENVEWAADTIRYF*
Ga0111061_1000097	Ga0111061_100009731	F059076	MTNKILLLGLLLGGVSINAQNINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPIYSKNVGSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSAGKMVMMRAGNAVIPSVDFGGGKYGVTTAPATILLNKTQLTNNWEIHADYPNIGPYEFPSGSTSSTDLNLVNGKWIITLLVGKKEAVNFTELNFNQGGSAEGVGFSNPTYKTGLENFLKKLE*
Ga0111061_1000098	Ga0111061_100009841	F018385	MAENKWDSYLEGSIDKDRDPALDDEIIYGVNVKHFNLTVYHPNGRVKKYWNARILKDYLGYCRIACPRDDKILSFNWFNWTAYMFTQSGMNELVFMPHSRRGIVSQLSQGN*
Ga0111061_1000098	Ga0111061_100009842	F071329	MLPVAKIILSGLTSIGAGMIASKLTKPLVSNSNGIAKILLWFGSVGTGIAASAIVAREVENQFEETVAAVKEARSHVEIED*
Ga0111061_1000121	Ga0111061_10001216	F094006	MWGALEPAGPTGALYEPAVSVEAHIGELQAGGIAHRSLFAFGGSNVLAVAELGAEAPHAIDMYDITLCKPLSELFAEELEYAFNFGA*
Ga0111061_1000157	Ga0111061_10001574	F090517	LGLLFLASSCKNKKDTPRLELSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSGSEVEVSAYDSKDPTDSYAVQADCFYTITDRIFTLKIQGDRELHPSMDQNAWYLIRKEPSLLVFLANAGNPDREATLTLRKKL*
Ga0111061_1000198	Ga0111061_100019847	F105380	MSILELDSSQYVKQGRIFKKFDSALLDSYMDGRQTEYSINLSELDDQISDGIVYADHEGKMIYKFGAKKILQTAITNGLTITGLASEFKMKHYSFWVPDLYFISYSSFNPNSDLYIAYRSKDAKKICLTNIWSGSGNVDFYSPNGGRLVYNRLCKGRMMDDIGTDDYEAWKRSPVNRASNFVNK
Ga0111061_1002211	Ga0111061_10022115	F084342	LGGYLAIPIRRPFFAQALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0111061_1002333	Ga0111061_10023331	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGGATARGRG
Ga0111061_1002621	Ga0111061_10026215	F080165	MKNKKFILAILLSLTACNNKTKTISTLELEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDLQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDEDGPMGGRYIIYGDSLYISNHYNIYEEDSLSYTFTRFILK*
Ga0111061_1005880	Ga0111061_10058802	F045567	VHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSLSRERGCVVERVVR*
Ga0111061_1014279	Ga0111061_10142795	F105377	MRVRTTVRDFDKLPLLTPEEAFERAWEEGGSAHPVFDRGYRVRGLNDWKAIETLLRQNDVPDITVASFGLKRFEEIFDVFAMLSERGWHLWQTAANVYVGGERKTVQAIRAHYRGD*
Ga0111061_1034365	Ga0111061_10343652	F043990	MIKKLGIIFTIGVIILGIVVYADHKIESSAIEREFGVYMSNMNIDEKYRKEEWVPNGDGEKVIVLTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYVVDENDDRDFGILIVDTIRKEICIYNQIF*
Ga0111061_1041722	Ga0111061_10417221	F042387	MAGFFLVSCSRENDKMTDETLVNSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERVVFVYEKDFITSKIRYSQSGEELGKTNYQYNNGKLSSVIDEAVISDSGIQYKKVITREYSYNSSEVSVNENVKYHSESYAYNLKDENFTHTYVLNGENIIKIHHEISKNVPSGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSVLAVEFCGLDKDENTIADYLNFRWVSHNPTLIKKSINLYGSGADSSEYKFQYEYKNNFPIKTK