3300008524: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160319967 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008524
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052934 | Ga0111046
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160319967 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 114628481
• Sequencing Scaffolds: 24
• Novel Protein Genes: 26
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	2
Not Available	6
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga granulosa	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F046433	Metagenome	151	N
F054109	Metagenome	140	N
F055792	Metagenome	138	N
F076191	Metagenome	118	N
F077405	Metagenome	117	N
F081454	Metagenome	114	N
F081455	Metagenome	114	N
F084362	Metagenome	112	N
F090517	Metagenome	108	N
F092229	Metagenome	107	N
F094006	Metagenome	106	Y
F095633	Metagenome	105	N
F097490	Metagenome	104	N
F099454	Metagenome	103	N
F103430	Metagenome	101	N
F103433	Metagenome	101	N
F103435	Metagenome	101	N
F103436	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111046_100005	All Organisms → cellular organisms → Bacteria	226113
Ga0111046_100195	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	38858
Ga0111046_100391	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	27137
Ga0111046_101249	All Organisms → cellular organisms → Bacteria	12688
Ga0111046_101966	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9258
Ga0111046_103041	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	6564
Ga0111046_103902	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	5255
Ga0111046_104574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4521
Ga0111046_105183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4013
Ga0111046_105897	Not Available	3532
Ga0111046_106923	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2997
Ga0111046_111446	Not Available	1737
Ga0111046_112944	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1523
Ga0111046_114982	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1307
Ga0111046_117939	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1082
Ga0111046_118017	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1078
Ga0111046_121964	Not Available	881
Ga0111046_122101	Not Available	875
Ga0111046_122189	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga granulosa	872
Ga0111046_127394	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	712
Ga0111046_127969	Not Available	699
Ga0111046_129907	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	656
Ga0111046_130246	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	648
Ga0111046_132095	Not Available	611

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111046_100005	Ga0111046_100005180	F054109	MVGRPKSKKGTKVHTAFKIYPADKERAQNMADKLGMSLSAYINKAVLEKVERDEKSED*
Ga0111046_100195	Ga0111046_1001954	F055792	VGRSLFVEGQGGEIAGEALDSTSAVAHRILFLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCTLEEVRPVFVDESDDGTEAGTTWSRHPLETLQKEGYILFEGSMLPCKACRVDPRSSVKSLDLEPRIIGEAIEPVALPDVTRLDESIALQGIGSLRDLLMTPDVSETDYLQTSREEGTDLLQLMSIIARKYQLFHTFVS*
Ga0111046_100391	Ga0111046_1003912	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSATKGGNATGAKKISLADITGGDNSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0111046_101249	Ga0111046_1012498	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIIEKTAYCKNKYDYKGPLIAVDSKEMMSQDCNPSQVEPYVSQYGLQARVIAGLSPNDTSKIPAYIKRVSIFLALLTAFLLALVVQKIRALFGGIAASVFTVMLAFSPWIAGYARNIYWIEPLLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINAKASYRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFIQSILFWTILGYLIILSSRKIIGKKYSRPFLWSMNFSVIGAFCWLALMPGYALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0111046_101966	Ga0111046_1019666	F094006	MLSTLEPAGPMGALHEPAVSVEAHIGELQTGGIARRGLFAFGGSNVLAVAELGAEAPHAIYMYDIAVCKPLSKLFAEELEYAFNLGA*
Ga0111046_103041	Ga0111046_1030419	F046433	MIELPTSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIETTKHYLPDYMEDCAKELIVELAFLGMPELNFAANALAKRLRCHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPEDHEASVLVMAASGDYLDGGISAYSQYGGAIYPVEAYYRLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDALSLPALANIVRPYRNGKNFDGLSRFRQLLERE*
Ga0111046_103902	Ga0111046_1039023	F090517	LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNAKRGSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*
Ga0111046_104574	Ga0111046_1045742	F103436	MSKGGWRDKTDSEIFDSLRDWVMKCDLKYSKSDALYKVKLAQCLWGDAKYFEAVHLLDENEVFFEKSDWPYYALGIEILKARKHWLFSIFSTE*
Ga0111046_105183	Ga0111046_1051833	F103436	MMATSKYGWCCKSDAEILENLKDWVSKCDVSSKREALKKIDSAFALWGAGEYVSAVHLLDENEVFLEKSDWPYYALGIEILKARKHEFFNE*
Ga0111046_105897	Ga0111046_1058973	F084362	MSLMNCTFTVRWSDEKNEPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLEDGDKPSETEAEQKGFWWEK*
Ga0111046_105897	Ga0111046_1058976	F076191	MKIIAESPAEEALLWRIKALSDELVNQDNRCTSMPMWTILDNNKAGKDYGAVMYFTGKAAEQHIEENGHHYDNPTICVRSAHDNRELKDIVHLLILAGGNEIPSNHYGVLRDAGN*
Ga0111046_106923	Ga0111046_1069231	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMKMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0111046_111446	Ga0111046_1114461	F103430	MELITIKAFIGSDNKTKTLEVDKIISIVNANHEAFTLDYPVIGYWRGEAEETAVLYLSDERQKVMNTLSELKEVLDQEAIAYQIENDLQLI*
Ga0111046_112944	Ga0111046_1129441	F042387	AGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGHFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPALIQKSTNLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK*
Ga0111046_114982	Ga0111046_1149822	F046433	MIELPTSPDALSELNSVTPPDLTLQARDTSRNNPVTYVVDDGYMGTRTSDPCFRKMRRETTEYKALNEFLYFMKMVEPYVPDHIKDDARELRNELVFLGMSELHFAATALAKRLRHLLKVDNNPVYVDVGNSLSQCRVKNEMKSSQYILSLVLSKFLDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIIGGDQMRERISVFGAYNNPGAHKVSVLVMAASSNCIDNGIGADSLWGEATYPVEAYYRLKNDHNDWGVSRVTGIHSSTDSTFGCEVDDIAYRAIEGGVLKGERIDRLTLPALVNIVRPYRNGEDFDGLSRFRQLLEKG*
Ga0111046_115063	Ga0111046_1150632	F103435	MKFVFCTEPIYQYYRAHLYDADKDKLDKQLLIEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFEDIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALEGKSTVEPLRVWYPFDMNSYTNALE*
Ga0111046_117939	Ga0111046_1179391	F041827	MKHFLSILALGCLLLSCNRDLENNETPAPPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSIEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*
Ga0111046_118017	Ga0111046_1180171	F099454	MKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQQKSFRVLTASGKPYNHKIDWHIIGILDPKSETYLTKKVDTLSNGDLKISYDWVAFIVRENKSVIDVEVQNNETGQDRSVDFVAQDNHKGLASPSMTVIQRAK*
Ga0111046_121964	Ga0111046_1219642	F077405	TELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQK*
Ga0111046_122101	Ga0111046_1221011	F081455	NAIEDSKALIRHLDPDYAEYELESLNPVEEIDAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEHILGSYVDYDSFNKIKESNADTIIRSVRVLNFKMSDPNAVAAFNNFIMKFNPECDPNKRLRYELIRHQGREKDIVVRLSTVVNDVKYYADIYADLNKIDLDHHLISSAKKK*
Ga0111046_122189	Ga0111046_1221891	F092229	FSLKFYMKEIELFRHIKDCIGMFVPDSTYSNYVSLIIGYDLAKDVAERRFRSTIEELDLATVLQKVTTRPYIAILNNIFFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTINSAKTNIRRYMQQAYFDKYAADSNIISSHRVLNDPQVNAVKSAEFTYDLFTAARSEKFNPEMVRDIFLKYGLKTNSSRNLYTRMNNNLSLYYYMEDYLTEYMLKGSFTYGSQVYSTIKEFKCLPLMNVLTQLTRHNPSGYVLDSNLELVKG*
Ga0111046_127394	Ga0111046_1273941	F095633	MGNYENFTEVGRGEGLTEGELRTMGTLAMEATEELKKTTISKEAVLLGSVPFGSWDEFAKAVQEMAAHKMTAYSYEPIPVKINTKRLIAIAFLDDRGEMSVEEHSVPEEVFIDLSRTRCVVEEDRNRKSYEFTCPALERYPDGELCPTRKAYVISAIDVNGSQEVDFNIIYGGLN*
Ga0111046_127969	Ga0111046_1279691	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAETMVTGALERDLAIDCALEEVHPVLIDKGDDSTEAGTTWSRHPLETLQQEGNILFEGSMLPCEACGVNSRSSVKSLDLEPRIIGKAIEAIALPHVARLDEGIPLQRIGGLRDLLVTPDVSETDHLQTSREEGTDLLQLMSIIARKYQLFHTFVS
Ga0111046_129907	Ga0111046_1299071	F090517	TMNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNAKRDSYSVYLNFLSDSEVEVSAYASKDPTASYYEQARYYYTVTDRIFTLKTQVDYELNPPIDKNTWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*
Ga0111046_130246	Ga0111046_1302461	F097490	FCFFYWMFLKTQKMNKKMNVFCKIILPLLCIISCSKRDEIEVYNMELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVYIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYDNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0111046_132095	Ga0111046_1320951	F076191	ELVNQDNRSTNMPVWTILDNNKAGKDYGAVMYFTGKAAEQHINENNHHYKKPMICVRSAHDNRELKDVIHLLILAGGNEIPSSHYGVLRDA*