3300008474: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158944319 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008474
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053285 | Ga0115375
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 158944319 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 55789152
• Sequencing Scaffolds: 10
• Novel Protein Genes: 11
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F047127	Metagenome	150	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F074985	Metagenome	119	N
F084342	Metagenome	112	N
F094006	Metagenome	106	Y
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115375_100121	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	34927
Ga0115375_100135	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	33090
Ga0115375_100264	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	20159
Ga0115375_100562	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	10499
Ga0115375_100842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7221
Ga0115375_100863	All Organisms → cellular organisms → Bacteria	7011
Ga0115375_103529	All Organisms → Viruses → Predicted Viral	1937
Ga0115375_106741	All Organisms → Viruses → Predicted Viral	1199
Ga0115375_116272	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	645
Ga0115375_120007	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	552

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115375_100121	Ga0115375_10012137	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVKEDPKYKELDSKLKETELNNL*
Ga0115375_100135	Ga0115375_1001356	F094006	MRGTLEPAGPTGALYEPTVSVEAHIGELQAGGIACRSLFAFGGSNVLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA*
Ga0115375_100264	Ga0115375_1002643	F040149	VADEGAKEFRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLTPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNVHRMF*
Ga0115375_100562	Ga0115375_1005626	F098763	MDRRTSLRILSTSLYLATKLFKAVVRTTISYDSSDEVEGKRGMNAIPTAVDE*
Ga0115375_100842	Ga0115375_1008421	F084342	APPPPVGRQGGGAKLFLWGGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0115375_100863	Ga0115375_1008637	F074985	MMELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYDVDTESAVLFTINTFPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSVSNFDELYIDQTFRKMTPVAFTHNNQSWTVMGLELASAETGWFIYLKRRDSDFMTRLNFNRDQKFLYNPISGSWSLDDPTQEIKDLEEIKQALRADAILDVTVSGVPMRLIRVQEIAKGVLFFVFQDEEKNKRYYYNRSAIKLRIVTDSETGEQKYLLDHIKAMHID*
Ga0115375_100863	Ga0115375_1008638	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKGLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAEEYYDYWSAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAEREYGHWYTFRMSDDQKSKFTRHVMTNEKGHQSYDWVLDNVEWAADTIRYF*
Ga0115375_103529	Ga0115375_1035292	F051214	MPGKIVAHDTHLQIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIV*
Ga0115375_106741	Ga0115375_1067411	F018385	MAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTVYMFTHDGLNELVFMPGSSRKTISRLFHEEVK*
Ga0115375_116272	Ga0115375_1162721	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVLMPGSSRKTISRLFHEEVK*
Ga0115375_120007	Ga0115375_1200071	F047127	KKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDRDIREILEKY