3300008155: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 370425937 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008155
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053063 | Ga0114001
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 370425937 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 160898707
• Sequencing Scaffolds: 28
• Novel Protein Genes: 31
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	2
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F030786	Metagenome	184	N
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F054111	Metagenome	140	N
F055792	Metagenome	138	N
F061926	Metagenome	131	N
F071327	Metagenome	122	N
F076191	Metagenome	118	N
F077403	Metagenome	117	N
F084342	Metagenome	112	N
F084362	Metagenome	112	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F092231	Metagenome	107	Y
F094006	Metagenome	106	Y
F095630	Metagenome	105	N
F097526	Metagenome	104	Y
F098763	Metagenome	103	N
F101358	Metagenome	102	Y
F103431	Metagenome	101	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114001_100010	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	273617
Ga0114001_100017	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	218649
Ga0114001_100024	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	195975
Ga0114001_100060	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	122409
Ga0114001_100101	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	89389
Ga0114001_100140	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 278	73736
Ga0114001_100258	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	52709
Ga0114001_100411	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	40109
Ga0114001_100426	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	39062
Ga0114001_100730	Not Available	27332
Ga0114001_100835	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	24219
Ga0114001_101234	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	17818
Ga0114001_101491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	15498
Ga0114001_102119	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	11608
Ga0114001_102148	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	11471
Ga0114001_103173	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	8292
Ga0114001_104076	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas catoniae	6619
Ga0114001_104952	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5523
Ga0114001_104967	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	5506
Ga0114001_108538	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3246
Ga0114001_108683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	3196
Ga0114001_109504	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2920
Ga0114001_111009	Not Available	2507
Ga0114001_111127	All Organisms → cellular organisms → Bacteria	2477
Ga0114001_114614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1862
Ga0114001_115765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1713
Ga0114001_125306	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1023
Ga0114001_140842	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	592

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114001_100010	Ga0114001_100010220	F089056	MNKKMNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSISLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDISFIAITFTNKNEILFRKGIQ*
Ga0114001_100017	Ga0114001_100017194	F054111	MNKSLESITHKEFLKLMERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLEIESLSTADRDLFLNILDKEILFLI*
Ga0114001_100024	Ga0114001_100024126	F090516	LGKERLLELIYQIINKMKSNLSLKLFLAFERYFIENDEVISLDKSLEFTDVIVGIGFLPHDMSENTDFKKKILKKYGFSSATALAEDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDTFYNRMYMFGIHCFNGDFNVTYFDLDNDAETGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLVTDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGISEAMAEMMEYSHKIQRAEPVIEIIREYGVCRSSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLYPYHLWLCHLDEGADAYLFLLFPEEDMPEIMKLARILDLPLKAYFK*
Ga0114001_100060	Ga0114001_100060122	F043990	MIKKLGIIFTFGVIILGIVVYAGHKIEKSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGERVIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGILIVDTARKEICIYNQIF*
Ga0114001_100101	Ga0114001_10010171	F061926	MMIKTAKHIKTFLASMLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPFTDFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS*
Ga0114001_100140	Ga0114001_10014019	F051213	MNLYKILGALILALSFVFTSCDWVSNEPTIEGDRFKYFDSSAQRKSFRVVNASGKRYNHKVDWHIIGITQLDSDTFFTKKVDTLSNGNLKISYDWVSFTVKERKSVIEVEVQKNETGQARSVFFATSNSRYQAHLPNMIITQRAK*
Ga0114001_100258	Ga0114001_10025829	F045567	MVTEDVVHTSTHRVEDALLPIDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAQTTVTGIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSESGCVVERVVR*
Ga0114001_100411	Ga0114001_1004117	F043235	MDEVVPSDEGHLLIDLCDDDPRRLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDSLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0114001_100426	Ga0114001_1004261	F022002	RSVSSSLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSMSFTFDDLEIFEQIESRLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0114001_100426	Ga0114001_10042621	F077403	MCTVYAEGRISVHFEVRWHRERNPMDTLRRELNVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTMIEGYPRRERISDTHYVPKWSTNALRFYKERVRRHMTHQVLVWDQAWVVDLEPSIVDGLPKPRLDYQYPHANWSECAYYLQGHLYYLLTPQRGHDWFQVSFLPDHAAHSVATEAVVTEGELHPYVHRLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWQASVRLRDEGTSLNVYLLRDQEAPPSPQGYALPDRYEGYQLYQGQVRGDSIWIEM*
Ga0114001_100426	Ga0114001_10042623	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSERAYYLQGYLYYLLTPQLDHDWYQVTYLLEHMNHSVGTETTGTEGVLKPFVHHLAFLPARSRREYVYSLLAFRLIRGRWHFMLPDWEASARLRDEGTSLNVYLLRDQEAPTSPHGHPLPNHYEGYQLYQGLVRGDSIWIEM*
Ga0114001_100730	Ga0114001_10073025	F105376	MNEQPEVSAKEFGALQAKVEYIKDGVDKHTVMLERIENIARANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQSQVKRR*
Ga0114001_100835	Ga0114001_10083516	F098763	MDRRTSLRILSTALYLATKLFKAVVRTTISYDPSDEVEGKGGMNAVPTAVDE*
Ga0114001_101234	Ga0114001_10123420	F030786	MLVVMVVTSSLQMLLKNGSATKGGNAMGAKKISLADITEGDDSTEGVLKVKYFDDDGADKIFENNNNKILNTINSQHISFNSQSAEYSKPQLFLLYRSLKVDC*
Ga0114001_101491	Ga0114001_10149112	F103431	MIDLDALIVGMLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFNGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG*
Ga0114001_102119	Ga0114001_1021193	F094006	MRGALEPAGPTGAMNESVVSVESYIGELQAGGIACRALFAFGGSNVLAVAELGAEAPHAIDMHDIALCKPLSELFAEELEYTFNFGA*
Ga0114001_102148	Ga0114001_1021485	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARGVDSRSSVKSLDLESRIIGKAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL*
Ga0114001_102148	Ga0114001_1021486	F040149	VADEGAKELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWSHDSEDAIDYFIYDASVPKGHALTAVRERETVVVQLLNIHRTF*
Ga0114001_103173	Ga0114001_1031737	F053092	MQSDQGLILCLTHELLVLRALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0114001_104076	Ga0114001_1040762	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVHAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGMMIESEGMFKKKSIADAFTSLEVVRTFDYEGHSMSKNAYIAYTDLELERARSAEKESEI*
Ga0114001_104952	Ga0114001_1049522	F094006	MWGALELAGPTGVLYESTVCVEAHIGYLQAGGIARRGLFAFGGSNLLAVAELGAKAPYAIDMYDIALSKPLSELFAEELEYAFNFGA*
Ga0114001_104967	Ga0114001_1049674	F098763	MDRRTSLRILSPTLYLATKLFEAVVRTTISYDPSDEVEGKGGMNAIPTAVDE*
Ga0114001_108538	Ga0114001_1085385	F084342	VSLQCGAKLFLWGGYLAIPIRRPFSAKALKETLGQERGLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0114001_108683	Ga0114001_1086834	F097526	MTTDNTTAIAPYTQDGYRQLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNGHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRMALLTIAEMTDTAPSLVACYLNGTGGEHLGRALAEKTVYPVTVVSNLAWLLHEQYKSGQLQRDLRHTAAASGLAGTEAMQAAVPVSRQQDGRQSS*
Ga0114001_109504	Ga0114001_1095042	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGAISEVLRKTAFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALVAALLFEYAYPWRLIFG*
Ga0114001_111009	Ga0114001_1110092	F084362	MNCTFTVRWSDDKNKPHAKTYATEADAKRAKKWLLEHGVRSVDIAVKINNKPAGSLQDSEKQPEAAAEQKGFWWEK*
Ga0114001_111127	Ga0114001_1111275	F076191	LSAELVNQDNRSTDMPMWTILDNNKAGKDYGAVMYFTGKAAKQHIDENDHHYENPMIYIRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLSDA*
Ga0114001_114614	Ga0114001_1146142	F092231	MLVQFPWPIQLNDFPPYAERLAWKATLRSTWFNVLPGNDNKFAMLGSNKEGNVYNLYLHMAVNEVDDVEGAVELNDHLVSCVAAGRKEWGEPFLLEAGDDPTATWRFPGDMFAQVTGGFTAVLFQFFTPEGRWYFL*
Ga0114001_115765	Ga0114001_1157651	F095630	GGYFLADKETNKMMYSSLYKTVENNGLLAHIYEHLFAQYVMKALQRRGFFISSDITLTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDEWDIPGSATLRAAAECGIEMNRLVTELVQDELLHKLSAVQSSAWRQQSDITYRKADDKSSVNTLFRIPYIKYGVESKNLFPEYVLEYSVDEKHIHSPVNQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYMQFLSTSSFRDNLQAALVRCSHNYEQVLLDRDTLNSILGGCVIGGKGWLKMADNTLIGQILKAIEIDVYDI*
Ga0114001_125306	Ga0114001_1253062	F101358	MTEKHSASLPPRQEHLLTQPITTDGTPEKRTTHSDAYIIPKHENVPQYLWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMIKDGRLQPAADTTHATHQNDSTDEQETEVLLAQRGDTYEHLSGGSARQLVGSVAAKASDGELDNSLLVERALKR*
Ga0114001_140842	Ga0114001_1408421	F045567	VHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQENSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRR