3300008099: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763820215 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008099
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053122 | Ga0114261
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763820215 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 100331678
• Sequencing Scaffolds: 23
• Novel Protein Genes: 33
• Associated Families: 31

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus mitis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Predicted Viral	1
Not Available	3

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F046433	Metagenome	151	N
F047508	Metagenome	149	N
F051212	Metagenome	144	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F054110	Metagenome	140	N
F055792	Metagenome	138	N
F061927	Metagenome	131	N
F063777	Metagenome	129	N
F064819	Metagenome	128	N
F067846	Metagenome	125	Y
F068942	Metagenome	124	N
F073671	Metagenome	120	N
F077404	Metagenome	117	N
F077405	Metagenome	117	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F089056	Metagenome	109	N
F092230	Metagenome	107	N
F094006	Metagenome	106	Y
F099454	Metagenome	103	N
F103431	Metagenome	101	N
F103433	Metagenome	101	N
F103436	Metagenome	101	Y
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114261_100001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	535412
Ga0114261_100004	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	333145
Ga0114261_100006	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	273628
Ga0114261_100013	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	213983
Ga0114261_100208	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	32305
Ga0114261_100607	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	17748
Ga0114261_100702	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	16368
Ga0114261_100721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	16166
Ga0114261_100967	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	13605
Ga0114261_102253	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7607
Ga0114261_102268	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7573
Ga0114261_102507	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	7027
Ga0114261_102663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus mitis	6751
Ga0114261_102735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	6606
Ga0114261_103727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	5150
Ga0114261_104684	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4188
Ga0114261_105259	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3786
Ga0114261_105501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	3646
Ga0114261_105885	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3415
Ga0114261_105895	All Organisms → Viruses → Predicted Viral	3407
Ga0114261_120957	Not Available	868
Ga0114261_122757	Not Available	785
Ga0114261_125471	Not Available	685

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114261_100001	Ga0114261_10000112	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSAVKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINNQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0114261_100001	Ga0114261_100001227	F042387	MKRIILFFMAGLFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYSYSGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPNGHFYLNPNNMVVIDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVIMMVYEYNK*
Ga0114261_100001	Ga0114261_100001232	F041827	MKRFLSALALGCLLLSCNRDLENNETPAPAPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDRGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNHGIERIEDLRYIDNIKTRDFHDGDYWEYRYRYDKENTYNGDYPNGVGIHARSHNDPTYDEYLYEISANRSYIKEE*
Ga0114261_100001	Ga0114261_100001233	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGNNVRFQYKNGNEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRKFTYELPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKGKSHDNDYLEIENITVYEKSHNDPTHDNDLYSVSPARFYTKEK*
Ga0114261_100001	Ga0114261_100001428	F061927	MKNPIFILSAMFILGACSSESAKKAYNDSFRKTFIEEGVKSCIENSGLKESEAREYCECAMNKINENLSNDEIIDISMDNPPKDLDERIDKAISSCIGK*
Ga0114261_100004	Ga0114261_10000419	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDVERYDLEKLTRNLKNLYECKIRKFFFQNIDETIEIVFSINDIGAIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQELKKI*
Ga0114261_100006	Ga0114261_100006142	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKVVINYKELPAPVKKKVFPPNNGLITFGEENREEYESFQETNNPKKYEYYTKQDPQLAWVHDPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYISNHYNIYEKDSLKYTFTRYILR*
Ga0114261_100013	Ga0114261_100013125	F081454	MKVFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDMSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0114261_100013	Ga0114261_100013140	F051212	MKKFFFIFVLYWLHSCNGTEKAMPTSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTNKKEYSKTNIQNNKTWDYITKQIIDIKYSQLNNHLNLEK*
Ga0114261_100013	Ga0114261_10001360	F063777	MKILNIKISALPPENNSFWMKLLLFLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFDDFCAKSNEHLDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0114261_100013	Ga0114261_10001377	F089056	MNIFCKIILPLLCIISCSKRKEADNTMVLEKNHTFFLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPTRRFKDKEVIIFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ*
Ga0114261_100208	Ga0114261_10020837	F043990	MIKKLGIIFIFGVIILGIVVYADHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGKKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNITNGYYKYIGDENDDRNFGILIVDTTRKEICIYNQIF*
Ga0114261_100607	Ga0114261_1006073	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0114261_100702	Ga0114261_1007022	F051213	MALTFVFTSCDRVGDEPTIEGKLDKFFDSQAQRKSFRILTGSGKPYNHKVDWHIIGITAPYSDTYLTKKVDTLSNGDLKISYDWVSFTVRENKSVIDVEVQKNETGKVRAVYLNTSTSGRQITLPDMRVTQRAE*
Ga0114261_100702	Ga0114261_1007023	F099454	MALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0114261_100702	Ga0114261_1007024	F051213	MALTFVFTSCDPFSQNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKPYNHKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTVKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK*
Ga0114261_100721	Ga0114261_10072116	F103431	MIDLDTLVVGMLFFIQLFLQGIAWRVAIAHFLHAERGNTAAAAFDGAFGENIADCHAKDDNDKNAESEEEGFHVCIPEG*
Ga0114261_100967	Ga0114261_1009673	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVTRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0114261_102253	Ga0114261_1022533	F094006	MRGTLEPAGSTGALHEPAVSMEAHIGYLQAGGIACRDLFTFGGRHLLAVAELGAEAPHAIDMHDIALCEPLSELFTEELEYAFNFGA*
Ga0114261_102268	Ga0114261_1022685	F055792	VEIASEALDSTSAVAHRILLLTTQLGESLLASLRTEDGVIAEAMVTGALERDLAIDCALEEVRPVFVDESDDSTEAGTTWSRYPLETLQKEGYILFEGSMLPCEACGVDSRSSVKSLDLEPRIIGKAIEAVALPDVTCLDESIPLQGIGGLRDLLMTPDVSETDHLQTSREEGTDLLQLMGIIARKYQLFHTFVS*
Ga0114261_102507	Ga0114261_1025071	F046433	MIELPTSPDALSELSPVAPPKLLSQAQDASRDNLMVYIKADNYLGTETSDPSFMKSRCETTEYEAINDFVQFIEMIKHYLPDYMEDCAKELIVELAFLGMPELNFAANALAKRLRYHLEVDNKPVYIDVGNSLSQYRAKNEMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIGKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEGIDELSLPALA
Ga0114261_102663	Ga0114261_1026637	F077404	MAQQIIMTHKLAAAALSLKEPTQIGNTQNPFAMNTLKTIFTCFFTLCFMMVANSYAQKTDSINTEAGKSVLHRNAIYIPPALEQYADTTLLHQRFNVENKGNYLYTPFTEDNEPSILFNYGFLHPLGERFYNCFMGKVDRILRPKADKGFIIFTNYLVVLGDTYAFDTSNKDTSKLADLKYLDFRHIKRDFSYGHPYQGFTHNDRIELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFENRYTRGRKLILTDGHSTLYLYFLMIDSVAPNFDTEVLPYIKGVFRFNRFR*
Ga0114261_102735	Ga0114261_1027352	F092230	MVNKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNGSEYINMAYGEGSVEVSDSTSTGEVQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIDMAVGYYSYLKPETVYEFYCKLRRKEKYXXXXKYPSDVNLVKRIGFLVIILPPCMLFLLIV*
Ga0114261_103727	Ga0114261_1037275	F054110	VNYQPTIKKLLKALQMNGRRYVVDIRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD*
Ga0114261_104684	Ga0114261_1046843	F045567	MRQRDGRDTLTEELEGGITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVKDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114261_105259	Ga0114261_1052593	F043235	VDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRYMDQVVASDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0114261_105501	Ga0114261_1055011	F103436	MMATSKDGWCNKSDAEILDSLRNWVLRCDLKYSKREALKKIDSAFALWGGAEYVAAVHLLDENEVYFSKEDWPYYALGIEILKARKYTYFY*
Ga0114261_105885	Ga0114261_1058853	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLTAFLLALVVQKIRVLFGGITASVFVVMLAFSPWIAGYARNIYWIEPMLIAPFVISFASYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPESYNFINKIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTIL
Ga0114261_105895	Ga0114261_1058951	F067846	MSIIADWERQEFNKYDRRCCAEDAYNEAVEREIECIEEDISNGDSDALCAFSEKMFDDDEFLKAVALGTDCEEMRIKILTAMAEDRLKQLEEDYRKGYILND*
Ga0114261_105895	Ga0114261_1058957	F073671	MNKQQTEHELAELHEKERSLEKALELVREKIRELVNYTDKNKV*
Ga0114261_120957	Ga0114261_1209571	F077405	WQGRALPTELFPRLLVAKQRGVFYGFIVLCQIKFVKIFFDWLKIIQK*
Ga0114261_122757	Ga0114261_1227572	F105376	MNKNKKEGNMEPEVSAKEFGALWANVEHIKEGVDKHTVTLERIENIARTNVTQEQLKAHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK*
Ga0114261_125471	Ga0114261_1254711	F068942	ILQIQSSVLIDNPHTKSIMIRKILSLPTLALCFTLCTALFAGCGENNEGFVTKVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKHFKFSVSVTPPGTYFFNVRQPALPAKAQ*