3300007994: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 160158126 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007994
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053048 | Ga0113878
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 160158126 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 118347307
• Sequencing Scaffolds: 15
• Novel Protein Genes: 18
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ct89S11	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F043991	Metagenome	155	N
F046433	Metagenome	151	N
F076191	Metagenome	118	N
F077405	Metagenome	117	N
F080166	Metagenome	115	N
F081454	Metagenome	114	N
F081455	Metagenome	114	N
F084362	Metagenome	112	N
F089055	Metagenome	109	Y
F089057	Metagenome	109	N
F090517	Metagenome	108	N
F092229	Metagenome	107	N
F095633	Metagenome	105	N
F098763	Metagenome	103	N
F099453	Metagenome	103	N
F103431	Metagenome	101	N
F103433	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113878_100024	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	102261
Ga0113878_100029	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	99159
Ga0113878_100068	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	59576
Ga0113878_100966	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	12472
Ga0113878_101777	All Organisms → cellular organisms → Bacteria → Proteobacteria	8305
Ga0113878_101916	Not Available	7852
Ga0113878_103015	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	5656
Ga0113878_106847	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	2944
Ga0113878_115642	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1450
Ga0113878_117281	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1325
Ga0113878_118813	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → unclassified Candidatus Saccharimonas → Candidatus Saccharimonas sp.	1224
Ga0113878_133194	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	719
Ga0113878_136998	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ct89S11	644
Ga0113878_139840	Not Available	598
Ga0113878_140275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	591

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113878_100024	Ga0113878_10002450	F092229	MSENYRFDHMPEVVLRNVKFIRENNIDIGTGDDVLDCMMEINPVLRQRIYDDYDLAKDVAERRFRSTIEELDLATVLQKCTTRPYIAILNNIFFRYFNSKLIDDMFKLGESTKVLDLAIEYECEYYTINSAKTNIRRYMQQVYFDKYAADSNIISSHRVLNDPQVNAVKSAEFTYDLFTAARSEKFNPEMVRDIFLKYGLKTNSSRNLYTRMNNNLSLYYYMEDYLTEYMLKGSFTYGSQVYSTIKEFKCLPLMNVLTQLTRPNPSGYVLDSNLELVKG*
Ga0113878_100024	Ga0113878_10002470	F099453	MLRRKDMNRFDIIELAQQTITFVHSAFNGKVNALDPYTRLNFVAGYLDKKTNIARTTPYGCIYVSLEAFADTVEAYKFIDTDQIRNLALEIIIHELTHIDQLIDYRYIKFNNGYREEIERQCVKQSCQWILDNIQFIRSLGLVVIPEVYEERLVGLSNVTYSFKNPAVIAMSKLEHMIGKKFKEFNSTDIEIHYVDRLKNYYKIPVCANRMYQNSQNLNDLGERLLNDKQYTIEYMEYGNSKLVIKITQGA*
Ga0113878_100024	Ga0113878_10002473	F080166	MEVTFNGILKRLGNDVKENFHTEYIVNSGSLTTNVKYRYRMKLSPKGEQTCVYIDWDNYDDLFNVLEESIKICDPENPRTPFKRTYSDKGDLLDIRCNSLQVKYQHLNDRFGNTIDLIPFVLVDEQSGLLTEAIRFRFNNELVYDVPISRLKGFRRFLMTYNPLLHAGAMARYMAMTPLLGSNRQNMMRS*
Ga0113878_100024	Ga0113878_10002474	F081455	MDLLKHLNETKLNLKFQQEREKRNAIEDSKALIRHLDPDYAEYELESLNPVEEIDAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEHILGSYVDYDSFNKIKESNADTIIRSVRVLNFKMSDPNAVTAFNNFIMKFNPECDPNKRLKYELIRHQGREKDIVVRLSTVVNNVKYYADIYADLNKIDLDHHLISSAKKR*
Ga0113878_100029	Ga0113878_10002923	F089057	MTNLIPIIAKKYNRKGDTSGSLKSLVSDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSNDIYIKIFGNVLTFINMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM*
Ga0113878_100068	Ga0113878_10006848	F089055	LKVEKMNSTPECVTKTPEIEAREKLAAIFSDAERCDNSKVNPELGKTAIDIENTSRMNSADDGAVYLCNQALGSYGKSLDYINNSPLEAVQAIGNSLQRLREYKTERSCR*
Ga0113878_100966	Ga0113878_10096611	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIEKNNHHYNNPTTCVRSAHDNRELKDVIHLLILAGGNEIPSNHYGFLRNA*
Ga0113878_101777	Ga0113878_1017773	F103433	MKEWSKNKPGVVFFFVVWFILSISFIGNFFGTGLWNGWFDGFQKDSSAIVEKTAYCKNKYDYKGPLIAADSKDYNKIMMSQDCNPSQVKPYVSQYGLQARVIAGLSPNDASKIPAYIKRVSIFLAVLAAFLLALVVQKIRALFGGITASVFVIMLAFSPWIAGYARNIYWIEPMLIAPFVISFVGYQYFKKSKKLWLFYIIESVAMFLKLLNGYEYVSTIAISVLVPIIFFELVHKNVKIINLWKQAVPVFAATVVAFFGAYWVNFVSLTDYYGSSDKAASAINARASDRGISGIRSMRAYAVGNFKILRPETYNFINQIVNLDNMANNSGKTYKYIIVNVVNYLLLPAITLPVHINGMFGEFVQSILFWTILGYLIILSSRKIIGKKYNRPFLWSMNFSVIGAFCWLALMPGHALPHAHINGIIFYIPLLLFVYVLIGLWADYVVKRTVKYE*
Ga0113878_101916	Ga0113878_1019166	F084362	MNCTFTVRWSDEKNKPRSKTYETEVSAKKAKKWLLEHGGRDVDVAVKINNKPAGSLQDSEKQPEAVAEQKGFWWEK*
Ga0113878_103015	Ga0113878_1030152	F090517	LGLLFLASSCKNKKATPRLEFSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL*
Ga0113878_106847	Ga0113878_1068471	F081454	MKVFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTNQN
Ga0113878_115642	Ga0113878_1156422	F033081	MAWLFRRAMPQDTRPTFVWSRLVAEIENAGYFSRWKFSILAVGLIIMTIATIKMLLFVPGLNQSAVSLLTRGLETFLPTRWATATAWTVGMAGVFLMGDLTNYTPSQKILHKIKATRYEVYNTILFLALLEEQAFRSGSERWNWRERVRASVCFGLLHITNIWYSFAAGIALSVTGFGFLLVYLWYYRKYRIQIIATAAAATVHALYNAIALSLIAVVLAIDIAKLL*
Ga0113878_117281	Ga0113878_1172811	F046433	MIELPTSPDALSELSPVAPPKLLSQAQDASRDNLMVYVKADNYLGTETSDPSFMESRCETTEYEAINDFVQFIETTKHYLPDYMEDCAKELIDELAFLGMPELNFAANALAKRLRHHLEVDNKPVYIDVGNSLSQCRAKNKMKSSQYILSLVLSKFPDDEFEEYEGRLKVYGGRGEIDKSSKILFLDDWIVSGDQVKERIAGFEVDNDPESHEASVLVMAASGDYLDNGISAYSQYGGTIYPVEACYVLKNSPDAGGMSRVTGIHSSTDNTFGYEVDGIAYCAIERGILKGEKIDELSLPALANIVRPYRNGEDFDGLSRFRQLLEKE*
Ga0113878_118813	Ga0113878_1188131	F095633	MGNYENFTEVGRREGLTEGELRTMGMLAMEATEELKKTTIRKETVLLGSVPFGSWDEFAKAVQEMAAHIYEPIPVKINTKRLIAAAFLDDGGEMSVEEHSVPEEVFIDLPRTRCVVGADRSHKSYEFTCPVLKKFPDGELYPIREAYVISAIDVNGSQEVDFKII*
Ga0113878_133194	Ga0113878_1331942	F098763	MDRRTSLRVLSTALYLTTKLFKAVVRTTISYDSSDEVKGKGRMNAVPTAVDE*
Ga0113878_136998	Ga0113878_1369981	F043991	MSKKNPSVVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLVDGTEVSFYKGRNLIYSDILFSGGVRTILFKCRQKKNLTRFISRVLELSQGKPENIHPDFRA*
Ga0113878_139840	Ga0113878_1398402	F077405	LLVAKQRGVFYGFIVLCQIKFVKKFFDWLKIIQK*
Ga0113878_140275	Ga0113878_1402751	F103431	MIDFDALVVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKDAESQKKGFHVCIPEG*