3300007663: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765701615 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007663
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052767 | Ga0105541
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765701615 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 99690635
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043235	Metagenome	156	N
F046432	Metagenome	151	Y
F047508	Metagenome	149	N
F051213	Metagenome	144	N
F051214	Metagenome	144	N
F054111	Metagenome	140	N
F058221	Metagenome	135	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105541_1000001	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	261670
Ga0105541_1000026	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	65116
Ga0105541_1000130	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	26067
Ga0105541_1000131	All Organisms → cellular organisms → Bacteria	25925
Ga0105541_1002002	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	4962
Ga0105541_1004295	All Organisms → cellular organisms → Bacteria	3063
Ga0105541_1004931	All Organisms → cellular organisms → Bacteria	2797
Ga0105541_1007510	Not Available	2106
Ga0105541_1008464	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1929
Ga0105541_1008928	All Organisms → Viruses → Predicted Viral	1853

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105541_1000001	Ga0105541_1000001258	F105380	MEGRQRQYNINLADLDDKISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDSGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK*
Ga0105541_1000026	Ga0105541_100002658	F081510	MKLPNMNTIKAAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVDSIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKVGMITFAEVLDALGFEVPKAALPFGWTDTDGFFLEWDTHEVWNDDKQEYEPQVYVRWKTPRNLYATTNFKDLMPKKTRKELN*
Ga0105541_1000130	Ga0105541_100013012	F051214	MPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYKDKNDIDEILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0105541_1000130	Ga0105541_100013014	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0105541_1000130	Ga0105541_100013025	F081456	MFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLATMTVILYTISAD*
Ga0105541_1000131	Ga0105541_10001319	F105376	MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARTNVTQAQLKAYIAEHEKESEEKYVKRTEVEGVMNFWSLITSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTQVRRK*
Ga0105541_1002002	Ga0105541_10020025	F101358	MTEKYSASLPPRQPEYLLTQPITTDGTPKECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0105541_1004295	Ga0105541_10042952	F047508	MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0105541_1004931	Ga0105541_10049311	F059076	LMTHKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSAMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSAGKMVMMRAGNAVIPSVDFGGGKYGVTTAPATILLNKTQLTNNWEIHADYPNIGPYEFPSGSTSSTDLNLVNGKWIITLLVGKKEAVNFTELNFNQGGSAEGVGFSNPTYKTGLENFLKKLE*
Ga0105541_1007510	Ga0105541_10075102	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIVLLWQSRAPPVFS*
Ga0105541_1008464	Ga0105541_10084642	F084342	VSGQCGAKLFLLGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0105541_1008928	Ga0105541_10089282	F105377	VRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNSWKAIETLLQQNDVRDITVASFGLKRFEEILDAIAMMHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI*
Ga0105541_1011675	Ga0105541_10116752	F043235	MDEVVPSDEGHLLIDLRHDDAGTFGSGLRVVTGDAEGAVALFIGLAHRDQCDIDRIDTIPKEVREFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0105541_1012629	Ga0105541_10126293	F046432	MQMTENELSEVISRFQMPQGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREEGFDNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS*
Ga0105541_1015660	Ga0105541_10156601	F098763	ILSTSLYLATKLFKAVVRTTISYDPSDEVEGKGGMNAIPTTVDE*
Ga0105541_1019045	Ga0105541_10190451	F064818	NGNTSKLYSTNHKSIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYSRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKKLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0105541_1019422	Ga0105541_10194223	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLSNALLKRVKPSMKKTLIGLGVAVLTPIIIMQI
Ga0105541_1025183	Ga0105541_10251832	F103434	VVEVTLAVVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIVKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0105541_1025264	Ga0105541_10252641	F090517	LGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEYKSAKRGSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANA
Ga0105541_1031048	Ga0105541_10310482	F051213	MHRYSYLAKQIHPMNLYKILGALILVLSCVFTSCDWVANEPTVEGDHFKYFDSSAQRKSFRVVNASGKRYNHKVDWDIIGITQLDSDTFFTKKVDTLSNGDLKISHDWVSFTVKERKSVIEVEVQKNETGQAR
Ga0105541_1034192	Ga0105541_10341922	F054111	MVFKNLEKENMNKPLDNITHEVFLKLIEHLKNPQEFTFLEYIMAPEADIFYFNFMEKTMKIKWDLDYGLSLETKALSTSDKDL
Ga0105541_1034654	Ga0105541_10346541	F099454	TERIYLYLVSKRTHKPKTHSGIKTLMKASELLWAVVIALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0105541_1037450	Ga0105541_10374501	F071327	DKMEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYIFLKNNQILTLKILIIALASALLFEYAYPWRLIFG*