NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300007663

3300007663: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765701615 reassembly



Overview

Basic Information
IMG/M Taxon OID3300007663 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0052767 | Ga0105541
Sample NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 765701615 reassembly
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size99690635
Sequencing Scaffolds21
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip21
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes3
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis1
Not Available1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018385Metagenome235Y
F043235Metagenome156N
F046432Metagenome151Y
F047508Metagenome149N
F051213Metagenome144N
F051214Metagenome144N
F054111Metagenome140N
F058221Metagenome135N
F059076Metagenome134N
F061926Metagenome131N
F064818Metagenome128N
F071327Metagenome122N
F081456Metagenome114N
F081510Metagenome114N
F084342Metagenome112N
F090517Metagenome108N
F098763Metagenome103N
F099454Metagenome103N
F101358Metagenome102Y
F103434Metagenome101N
F105376Metagenome100N
F105377Metagenome100Y
F105380Metagenome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0105541_1000001All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2261670Open in IMG/M
Ga0105541_1000026All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes65116Open in IMG/M
Ga0105541_1000130All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes26067Open in IMG/M
Ga0105541_1000131All Organisms → cellular organisms → Bacteria25925Open in IMG/M
Ga0105541_1002002All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis4962Open in IMG/M
Ga0105541_1004295All Organisms → cellular organisms → Bacteria3063Open in IMG/M
Ga0105541_1004931All Organisms → cellular organisms → Bacteria2797Open in IMG/M
Ga0105541_1007510Not Available2106Open in IMG/M
Ga0105541_1008464All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.1929Open in IMG/M
Ga0105541_1008928All Organisms → Viruses → Predicted Viral1853Open in IMG/M
Ga0105541_1011675All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales1527Open in IMG/M
Ga0105541_1012629All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria1440Open in IMG/M
Ga0105541_1015660All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae1215Open in IMG/M
Ga0105541_1019045All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1034Open in IMG/M
Ga0105541_1019422All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae1018Open in IMG/M
Ga0105541_1025183All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes816Open in IMG/M
Ga0105541_1025264All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii814Open in IMG/M
Ga0105541_1031048All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas683Open in IMG/M
Ga0105541_1034192All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium628Open in IMG/M
Ga0105541_1034654All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas621Open in IMG/M
Ga0105541_1037450All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium578Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0105541_1000001Ga0105541_1000001258F105380MEGRQRQYNINLADLDDKISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDSGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK*
Ga0105541_1000026Ga0105541_100002658F081510MKLPNMNTIKAAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVDSIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKVGMITFAEVLDALGFEVPKAALPFGWTDTDGFFLEWDTHEVWNDDKQEYEPQVYVRWKTPRNLYATTNFKDLMPKKTRKELN*
Ga0105541_1000130Ga0105541_100013012F051214MPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYKDKNDIDEILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0105541_1000130Ga0105541_100013014F018385MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK*
Ga0105541_1000130Ga0105541_100013025F081456MFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLATMTVILYTISAD*
Ga0105541_1000131Ga0105541_10001319F105376MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARTNVTQAQLKAYIAEHEKESEEKYVKRTEVEGVMNFWSLITSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTQVRRK*
Ga0105541_1002002Ga0105541_10020025F101358MTEKYSASLPPRQPEYLLTQPITTDGTPKECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR*
Ga0105541_1004295Ga0105541_10042952F047508MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0105541_1004931Ga0105541_10049311F059076LMTHKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSAMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSAGKMVMMRAGNAVIPSVDFGGGKYGVTTAPATILLNKTQLTNNWEIHADYPNIGPYEFPSGSTSSTDLNLVNGKWIITLLVGKKEAVNFTELNFNQGGSAEGVGFSNPTYKTGLENFLKKLE*
Ga0105541_1007510Ga0105541_10075102F061926MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIVLLWQSRAPPVFS*
Ga0105541_1008464Ga0105541_10084642F084342VSGQCGAKLFLLGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*
Ga0105541_1008928Ga0105541_10089282F105377VRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNSWKAIETLLQQNDVRDITVASFGLKRFEEILDAIAMMHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI*
Ga0105541_1011675Ga0105541_10116752F043235MDEVVPSDEGHLLIDLRHDDAGTFGSGLRVVTGDAEGAVALFIGLAHRDQCDIDRIDTIPKEVREFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0105541_1012629Ga0105541_10126293F046432MQMTENELSEVISRFQMPQGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREEGFDNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS*
Ga0105541_1015660Ga0105541_10156601F098763ILSTSLYLATKLFKAVVRTTISYDPSDEVEGKGGMNAIPTTVDE*
Ga0105541_1019045Ga0105541_10190451F064818NGNTSKLYSTNHKSIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYSRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKKLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK*
Ga0105541_1019422Ga0105541_10194223F058221MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLSNALLKRVKPSMKKTLIGLGVAVLTPIIIMQI
Ga0105541_1025183Ga0105541_10251832F103434VVEVTLAVVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIVKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0105541_1025264Ga0105541_10252641F090517LGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEYKSAKRGSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANA
Ga0105541_1031048Ga0105541_10310482F051213MHRYSYLAKQIHPMNLYKILGALILVLSCVFTSCDWVANEPTVEGDHFKYFDSSAQRKSFRVVNASGKRYNHKVDWDIIGITQLDSDTFFTKKVDTLSNGDLKISHDWVSFTVKERKSVIEVEVQKNETGQAR
Ga0105541_1034192Ga0105541_10341922F054111MVFKNLEKENMNKPLDNITHEVFLKLIEHLKNPQEFTFLEYIMAPEADIFYFNFMEKTMKIKWDLDYGLSLETKALSTSDKDL
Ga0105541_1034654Ga0105541_10346541F099454TERIYLYLVSKRTHKPKTHSGIKTLMKASELLWAVVIALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0105541_1037450Ga0105541_10374501F071327DKMEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYIFLKNNQILTLKILIIALASALLFEYAYPWRLIFG*

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