Basic Information | |
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IMG/M Taxon OID | 3300007663 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0063646 | Gp0052767 | Ga0105541 |
Sample Name | Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765701615 reassembly |
Sequencing Status | Permanent Draft |
Sequencing Center | Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 99690635 |
Sequencing Scaffolds | 21 |
Novel Protein Genes | 23 |
Associated Families | 23 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 1 |
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 3 |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis | 1 |
Not Available | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. | 1 |
All Organisms → Viruses → Predicted Viral | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 3 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Type | Host-Associated |
Taxonomy | Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Animal → Animal surface |
Location Information | ||||||||
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Location | USA: Maryland: Natonal Institute of Health | |||||||
Coordinates | Lat. (o) | 39.0042816 | Long. (o) | -77.1012173 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018385 | Metagenome | 235 | Y |
F043235 | Metagenome | 156 | N |
F046432 | Metagenome | 151 | Y |
F047508 | Metagenome | 149 | N |
F051213 | Metagenome | 144 | N |
F051214 | Metagenome | 144 | N |
F054111 | Metagenome | 140 | N |
F058221 | Metagenome | 135 | N |
F059076 | Metagenome | 134 | N |
F061926 | Metagenome | 131 | N |
F064818 | Metagenome | 128 | N |
F071327 | Metagenome | 122 | N |
F081456 | Metagenome | 114 | N |
F081510 | Metagenome | 114 | N |
F084342 | Metagenome | 112 | N |
F090517 | Metagenome | 108 | N |
F098763 | Metagenome | 103 | N |
F099454 | Metagenome | 103 | N |
F101358 | Metagenome | 102 | Y |
F103434 | Metagenome | 101 | N |
F105376 | Metagenome | 100 | N |
F105377 | Metagenome | 100 | Y |
F105380 | Metagenome | 100 | N |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0105541_1000001 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2 | 261670 | Open in IMG/M |
Ga0105541_1000026 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 65116 | Open in IMG/M |
Ga0105541_1000130 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 26067 | Open in IMG/M |
Ga0105541_1000131 | All Organisms → cellular organisms → Bacteria | 25925 | Open in IMG/M |
Ga0105541_1002002 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis | 4962 | Open in IMG/M |
Ga0105541_1004295 | All Organisms → cellular organisms → Bacteria | 3063 | Open in IMG/M |
Ga0105541_1004931 | All Organisms → cellular organisms → Bacteria | 2797 | Open in IMG/M |
Ga0105541_1007510 | Not Available | 2106 | Open in IMG/M |
Ga0105541_1008464 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. | 1929 | Open in IMG/M |
Ga0105541_1008928 | All Organisms → Viruses → Predicted Viral | 1853 | Open in IMG/M |
Ga0105541_1011675 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales | 1527 | Open in IMG/M |
Ga0105541_1012629 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria | 1440 | Open in IMG/M |
Ga0105541_1015660 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae | 1215 | Open in IMG/M |
Ga0105541_1019045 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 1034 | Open in IMG/M |
Ga0105541_1019422 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae | 1018 | Open in IMG/M |
Ga0105541_1025183 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 816 | Open in IMG/M |
Ga0105541_1025264 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii | 814 | Open in IMG/M |
Ga0105541_1031048 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 683 | Open in IMG/M |
Ga0105541_1034192 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 628 | Open in IMG/M |
Ga0105541_1034654 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas | 621 | Open in IMG/M |
Ga0105541_1037450 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | 578 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0105541_1000001 | Ga0105541_1000001258 | F105380 | MEGRQRQYNINLADLDDKISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDSGLYLAYHKKDEKHICLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK* |
Ga0105541_1000026 | Ga0105541_100002658 | F081510 | MKLPNMNTIKAAAKTTYTTSKILTKKYAPFILLGVGLAGYGYSVYEGIKSGKKLEKTKAKYEELDQANIPYSKKEVVMDIAKDVAVPVAVATASTAAIVLGFAIQTNRLKAVSAALAMATEEHARYRLRAKTVLDEETFKKIDAPMETKSVEVDGKEIEVDSIVPNEGDFYGRWFKYSSNYASDDPEYNEAWVREVDDLMTARISKVGMITFAEVLDALGFEVPKAALPFGWTDTDGFFLEWDTHEVWNDDKQEYEPQVYVRWKTPRNLYATTNFKDLMPKKTRKELN* |
Ga0105541_1000130 | Ga0105541_100013012 | F051214 | MPGKIVPHETHLRIDTEFIELKDCFEAFRRGVEYKDKNDIDEILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA* |
Ga0105541_1000130 | Ga0105541_100013014 | F018385 | MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYYEEVK* |
Ga0105541_1000130 | Ga0105541_100013025 | F081456 | MFEEPPIYYILISLIFLIVFGAISFATWMVWLTAISFFAKLVVTAIGFLLATMTVILYTISAD* |
Ga0105541_1000131 | Ga0105541_10001319 | F105376 | MDNTDKEVSAKEFGALGADVIHIKESVDRHTVTLERIENIARTNVTQAQLKAYIAEHEKESEEKYVKRTEVEGVMNFWSLITSNLAKLFAIALVGLAIYATNNLIQQNKAVTELQEEVQQTQVRRK* |
Ga0105541_1002002 | Ga0105541_10020025 | F101358 | MTEKYSASLPPRQPEYLLTQPITTDGTPKECATHPDTHSIPKRDDVPQHLWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEILPTQSDNTYDHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR* |
Ga0105541_1004295 | Ga0105541_10042952 | F047508 | MLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP* |
Ga0105541_1004931 | Ga0105541_10049311 | F059076 | LMTHKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSAMDADLGGNTATTNHYTDYRPLVVDAVGDVYQGLPINNMSILTLTIDKVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSAGKMVMMRAGNAVIPSVDFGGGKYGVTTAPATILLNKTQLTNNWEIHADYPNIGPYEFPSGSTSSTDLNLVNGKWIITLLVGKKEAVNFTELNFNQGGSAEGVGFSNPTYKTGLENFLKKLE* |
Ga0105541_1007510 | Ga0105541_10075102 | F061926 | MMIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIVLLWQSRAPPVFS* |
Ga0105541_1008464 | Ga0105541_10084642 | F084342 | VSGQCGAKLFLLGGYLAIPICRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE* |
Ga0105541_1008928 | Ga0105541_10089282 | F105377 | VRDFDKLPLLTPEEAFERAWEEGGSDHPVFDRGYRVRGLNSWKAIETLLQQNDVRDITVASFGLKRFEEILDAIAMMHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI* |
Ga0105541_1011675 | Ga0105541_10116752 | F043235 | MDEVVPSDEGHLLIDLRHDDAGTFGSGLRVVTGDAEGAVALFIGLAHRDQCDIDRIDTIPKEVREFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH* |
Ga0105541_1012629 | Ga0105541_10126293 | F046432 | MQMTENELSEVISRFQMPQGRYLIEQEGSFGRGEFFWIIKNQSTNQKYLLMNTYSHHGVEAELECYREEGFDNLEAIPRRIETLEIPSDAEDEISKYLFGFYSIFEIKS* |
Ga0105541_1015660 | Ga0105541_10156601 | F098763 | ILSTSLYLATKLFKAVVRTTISYDPSDEVEGKGGMNAIPTTVDE* |
Ga0105541_1019045 | Ga0105541_10190451 | F064818 | NGNTSKLYSTNHKSIVVLLPYFTYMDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYSRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKKLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK* |
Ga0105541_1019422 | Ga0105541_10194223 | F058221 | MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGIMDSGLAQNAYSLADKFLLPSLEAGSAKLLSNALLKRVKPSMKKTLIGLGVAVLTPIIIMQI |
Ga0105541_1025183 | Ga0105541_10251832 | F103434 | VVEVTLAVVKEGRTGRRFERGETFVIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIVKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR* |
Ga0105541_1025264 | Ga0105541_10252641 | F090517 | LGLLFLASSCKKDTPLPPQLSEGELRQTVWNGTLEYKSAKRGSYSVYLNFLSDSEVEVSAYDSKDPTDPYYVQARYYYTLTDRIFTLKTQVDYELNPPMDKNTWYLIRKEPSLLVFQANA |
Ga0105541_1031048 | Ga0105541_10310482 | F051213 | MHRYSYLAKQIHPMNLYKILGALILVLSCVFTSCDWVANEPTVEGDHFKYFDSSAQRKSFRVVNASGKRYNHKVDWDIIGITQLDSDTFFTKKVDTLSNGDLKISHDWVSFTVKERKSVIEVEVQKNETGQAR |
Ga0105541_1034192 | Ga0105541_10341922 | F054111 | MVFKNLEKENMNKPLDNITHEVFLKLIEHLKNPQEFTFLEYIMAPEADIFYFNFMEKTMKIKWDLDYGLSLETKALSTSDKDL |
Ga0105541_1034654 | Ga0105541_10346541 | F099454 | TERIYLYLVSKRTHKPKTHSGIKTLMKASELLWAVVIALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTIREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK* |
Ga0105541_1037450 | Ga0105541_10374501 | F071327 | DKMEDLFNSVYSTHKGISFSTVVVFGAFIFLILQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYIFLKNNQILTLKILIIALASALLFEYAYPWRLIFG* |
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