3300007659: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 160158126 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007659
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052771 | Ga0105537
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 160158126 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 74681943
• Sequencing Scaffolds: 9
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F081455	Metagenome	114	N
F090517	Metagenome	108	N
F094006	Metagenome	106	Y
F097525	Metagenome	104	N
F097527	Metagenome	104	N
F098763	Metagenome	103	N
F103431	Metagenome	101	N
F103435	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105537_100001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	173949
Ga0105537_100009	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	72913
Ga0105537_100016	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	62111
Ga0105537_100089	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	29624
Ga0105537_100246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	16872
Ga0105537_100631	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	9797
Ga0105537_113030	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1082
Ga0105537_118514	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	818
Ga0105537_122747	Not Available	695

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105537_100001	Ga0105537_100001124	F053092	MQSDQGLILCLTHTLLVLGALILEPAEMEDTMDDHTVQLFGILVAKELGIATHRIKADKHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0105537_100001	Ga0105537_10000168	F047508	MLGHRLVEGRIKYPYLRSIWEYLRHSFDTEDVGRVVKRSELCALMEHIYYLRGDTYALSKALCTMYEAMSNGVDLIEGLYEVLFFENVKDNLYAACVVRNVKVALDLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGATTVEDQDFHKVLYYMVRCELILSSP*
Ga0105537_100001	Ga0105537_10000179	F098763	MDRRASLRVLSTALHLAPKLFEAVIWATIADDSSDEVEGKGRMNTIPTAVDEQTLGVL*
Ga0105537_100009	Ga0105537_10000957	F040149	VADEGAKELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGIALEREPRLAPVWSHDSKDAIHDFIYDTSVPKGHTLTAVRERETVVAQLLNIHRMF*
Ga0105537_100016	Ga0105537_10001651	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTRKIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0105537_100089	Ga0105537_1000896	F094006	MRGALEPADPTGTLYESVVSVEAYIGELQAGGISRRDLFALGWSNVLAVAELGAEASHAIDMYDIAVCEPLSELFTEELEYAFNFSA*
Ga0105537_100246	Ga0105537_10024615	F103431	MIDLDALIVGMLFFIQLFLQGIAWCVAIAHFLHAERGNAAAAAFDGAFRENIADCHTEDDNDKNAESKEEGFHVCIPEG*
Ga0105537_100631	Ga0105537_1006311	F090517	LGLLFLASSCKNKKDTPRLEFSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVEVSAYDSKDPTASYIVQADCFYTITDRIFTLKTQGDRELHPSMDQNAWYLIRKEPSLLVFQANAGNPDREATLTLRKKL*
Ga0105537_113030	Ga0105537_1130301	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGGEPARPCGHWILGPARPPIP
Ga0105537_114052	Ga0105537_1140521	F103435	MKFVFCTEPIYQYYRACVYNADKDKLDKQLLIEYGDYKDMWDLKQQQDALPENIFKAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPEFEDIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALDGKSTVEPLRVWYPFDMN
Ga0105537_118514	Ga0105537_1185142	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKGDFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFERE*
Ga0105537_122747	Ga0105537_1227471	F081455	LKFQQEREKRNAIEDSKALIRHLDPDYAEYELESLNPVEEIDAQNVEIIDAVDAIQQPLENKDAGIAVNFSQMINQPAIQEEVAKVVTSVPEQGEPKIKVVFPQNEHILGSYVDYDSFNKIKESNADTIIRSVRVLNFKMSDPNAVTAFNNFIMKFNPECDPNKRLKYELIRHQGREKDIVVRLSTVVNNVKYYADIYADLNKIDLDHHLISSAKKR*