3300007284: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159490532 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300007284
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052685 | Ga0104752
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 159490532 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 60759905
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F047508	Metagenome	149	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F067846	Metagenome	125	Y
F090517	Metagenome	108	N
F094006	Metagenome	106	Y
F098763	Metagenome	103	N
F099454	Metagenome	103	N
F103431	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104752_100230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	13312
Ga0104752_101585	Not Available	4553
Ga0104752_103576	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2648
Ga0104752_104880	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2137
Ga0104752_106095	All Organisms → cellular organisms → Bacteria → Proteobacteria	1817
Ga0104752_108223	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1454
Ga0104752_109475	All Organisms → Viruses → Predicted Viral	1305
Ga0104752_110162	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1231
Ga0104752_111154	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1134
Ga0104752_111407	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1112
Ga0104752_113796	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	945
Ga0104752_115235	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	871

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104752_100230	Ga0104752_1002304	F067846	MESLQAQWERKTFNDHDRRCCAEDAYNEAVEREIECIEEDISNGDSEELCKFSEKAFEDDDFVKAIALGNDVEEMRICILKSLAEERIEQRRKDYEKGFILND*
Ga0104752_101585	Ga0104752_1015852	F054109	MVGRPKTKRGMKVHAAFKIYPDDKARVQAMAEKLDISLSSYINKAVLEKVERDEKSED*
Ga0104752_103576	Ga0104752_1035762	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKIQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0104752_104880	Ga0104752_1048802	F098763	MDRRASLRVLSTALHLATKLFEAVVWATIADDPSDEVEGKRGMNAIPTAVDE*
Ga0104752_106095	Ga0104752_1060952	F103431	MIDLDALIVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGENIADCHAEDDNDKDAESQKEGFHVCIPEG*
Ga0104752_108223	Ga0104752_1082231	F053092	TRSYQALLLCLTHALLVLGTLILEPAEMEDTMDDHTVQLFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIAGSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0104752_109475	Ga0104752_1094753	F067846	MESLQAQWERKTFNDYDRRCCAEDAYNEAVEREIECIEEDISNGDSEELWKFSEKAFEDDDFVKAIALGTDYEEMRIKILTAMAEDRLEQLEKDYRNGYILND*
Ga0104752_110162	Ga0104752_1101622	F047508	MSRHRLVEGRVKYPYLRDIGEYLRHGFDTEDVGWVVKRSELCALMEHIYYLWGDTYALSKALCTVYEAVTDGVDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP*
Ga0104752_111154	Ga0104752_1111542	F040149	VADEGAEELRWEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALERKAGSYTVGSQNGEDAVDHFIYDISVPEGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0104752_111407	Ga0104752_1114072	F094006	MRGTLESAGPTGALHEPAVSVEAHIGELQAGGIVRRSLFAFGGSNVLAVAELGAKAPYAIDMYDIAVCEPLSELFAKELEYAFNFGA*
Ga0104752_113796	Ga0104752_1137961	F090517	MNRRILSFCGLLLGLLFLASSCKSKKDTPRLQLSSVELKQTVWNGTLEYKDASRLTYSVYLSFVSDSTVEVSTFATTDPTAAFDSKDLCSYTMDDRILTLRTRGALPLNVSIDRNSWYLIRKEPSLLVFQANAGNPAAEATMTLHRKL*
Ga0104752_115235	Ga0104752_1152351	F099454	MKASKLLWAVIVALTFVFTSCDRLTDEPTLEDRGYKYFDSTAQRKSFRVVTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*