3300007266: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ16 time point

Overview

Basic Information

• IMG/M Taxon OID: 3300007266
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114916 | Gp0124991 | Ga0101450
• Sample Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ16 time point
• Sequencing Status: Permanent Draft
• Sequencing Center: Australian Centre for Ecogenomics
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 89596380
• Sequencing Scaffolds: 23
• Novel Protein Genes: 29
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
All Organisms → Viruses	1
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86A	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86B	1
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267
  • Alt. (m): N/A
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002151	Metagenome / Metatranscriptome	589	Y
F002374	Metagenome / Metatranscriptome	566	Y
F008210	Metagenome / Metatranscriptome	337	Y
F008747	Metagenome / Metatranscriptome	328	Y
F009527	Metagenome / Metatranscriptome	316	Y
F027998	Metagenome / Metatranscriptome	193	Y
F030104	Metagenome / Metatranscriptome	186	Y
F030783	Metagenome / Metatranscriptome	184	N
F039118	Metagenome	164	Y
F041247	Metagenome / Metatranscriptome	160	N
F042570	Metagenome / Metatranscriptome	158	Y
F045363	Metagenome / Metatranscriptome	153	Y
F054343	Metagenome / Metatranscriptome	140	Y
F058285	Metagenome / Metatranscriptome	135	N
F058738	Metagenome / Metatranscriptome	134	N
F060926	Metagenome / Metatranscriptome	132	Y
F071205	Metagenome / Metatranscriptome	122	N
F074004	Metagenome / Metatranscriptome	120	Y
F078711	Metagenome / Metatranscriptome	116	N
F081298	Metagenome / Metatranscriptome	114	N
F084452	Metagenome / Metatranscriptome	112	N
F087146	Metagenome / Metatranscriptome	110	N
F099112	Metagenome / Metatranscriptome	103	N
F099122	Metagenome / Metatranscriptome	103	N
F101216	Metagenome / Metatranscriptome	102	N
F104613	Metagenome / Metatranscriptome	100	N
F105101	Metagenome / Metatranscriptome	100	Y
F105107	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101450_100702	Not Available	53674
Ga0101450_101075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	14476
Ga0101450_101158	All Organisms → Viruses	3669
Ga0101450_102023	All Organisms → Viruses → Predicted Viral	2874
Ga0101450_102586	All Organisms → cellular organisms → Archaea	7197
Ga0101450_103516	Not Available	6432
Ga0101450_103902	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	8409
Ga0101450_104391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86A	5007
Ga0101450_104492	All Organisms → cellular organisms → Archaea	2352
Ga0101450_104620	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	8698
Ga0101450_107789	Not Available	6113
Ga0101450_111062	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Ostreococcus → Ostreococcus mediterraneus	3126
Ga0101450_111787	All Organisms → Viruses → Predicted Viral	2897
Ga0101450_112090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → SAR86 cluster → SAR86 cluster bacterium SAR86B	2351
Ga0101450_112576	Not Available	5796
Ga0101450_112958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	5092
Ga0101450_113563	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2303
Ga0101450_113806	All Organisms → Viruses → Predicted Viral	3467
Ga0101450_114069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3723
Ga0101450_114354	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia	3878
Ga0101450_115276	All Organisms → Viruses → Predicted Viral	2729
Ga0101450_115572	All Organisms → Viruses → Predicted Viral	3837
Ga0101450_118024	All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	2163

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101450_100702	Ga0101450_10070227	F105101	LTRIVIVVVALPPVLLAVTVYDVEVDTAVGVPEISPVEVEKERPAGTAGEIDQEVTGPPLEVGVAVVIAVSFVKLNGVPL*
Ga0101450_100702	Ga0101450_10070231	F008747	MAVGVPLIVPVEVSKERPAGRDGDTDQEVTVPPLEVGVTDVIAVPLVSVSEFGV*
Ga0101450_101075	Ga0101450_10107510	F105107	MLQIQNTAIESFEGLLSYFEMIMLLSVLITLSIFKQANNIAILQSFGQSPLKISMIAACAPLILSFLFIGFSLLIPSNDVDTYPQWELEDQSISVLQKDKVISIDFSSNKINKVLSTTPNDLSANTEPSSVLQKMSSRTLSLPFATLALVLLASIFLYKHQRNFSISQSIFFGIAAGFGYKLISDLFYLGFRSFDLNINLGIFIPPTIALCFSVFFFLRLSKP*
Ga0101450_101158	Ga0101450_1011584	F008210	QVQGVISVRGTADTGTINLATTLKKSTETQSSPAVNIKGLHWTLSSGASAKVQRNSVVLYELMENGSLDMYGYADNSENTSNIEVVIAGGAGGTVIVDCAKISGYGSQQHQDAPLDTNDAGSVYDGGSLG*
Ga0101450_102023	Ga0101450_1020232	F099112	MRVKENLAVDPAYYISHQTDYNKFADAVMDVGDPPCVANNCDRVSKCAEEGVECFAFRIWVNNGGDLNEKQQKKMKKLLQPCK*
Ga0101450_102586	Ga0101450_1025868	F105101	MSNGAASLTVMVTDAVALPPVLFAYTVYVVEEEIAVGVPEISPFEVEKVSPAGRVGEIAHDVTAPPLAVGVAVVIAVPFVNVNGLPE*
Ga0101450_103516	Ga0101450_10351612	F045363	FDMVKTADGEAIGHDFGAESEVQVLWKKGNEHPQHGFATYLTAVKVMKRTEGYKSADEETNAFFA*
Ga0101450_103902	Ga0101450_10390217	F060926	LGHNTTGENIMSWQKQVKQIAVAVAVLSGIFMALSVGIGEAVQVVVDPNDPSNPLDPNTTAVFGGTVDFVDRIAVLGVFTTILGTSGLAILRKSSSNPPFVNTLITFMPIIVGLVAFTAFSTEVFDIIQGDRVWANYDDATNSYMLFLASSMVAGIVTLLQRN*
Ga0101450_103902	Ga0101450_1039026	F009527	MKNRFPPSIVNLLLKEGQRFEVNGQFKTALGTGIIPIVASARGGKTSLAYALIDYAIEYTNRPIILDSFPQKVIDEGIPGHWKGRVSNESFNDIAKIDQPAIWLLDDSATHFNSRSAMTSTNQTLAKSAGVLSHFGGGMTVIFTTQSMSGIDLSLLRYTTISPIIRWVDKDLIPQERKEWKGEIQYGQYQLSKVCKDERFRDFFWSAKDKVLVKSNYPKFLEEENDPLKKDLMSRPMRYHTVEEKEILLGIVKPPRKKTAKRKAKEDES*
Ga0101450_104391	Ga0101450_1043916	F030783	MTTDHKNKTPFLLGLLFLALVTTHEIEHIAEAFEIEDEAFEINCDYCEESQSQDLVNSKTNITFIDFDIEDSKLVSLTDESLSKNYHQRAPPKI*
Ga0101450_104492	Ga0101450_1044923	F078711	MFSGKNVVNLGILEGTLLVFVCIFASKTSISFAQKLSRGISIICLIGILYFASFWLLLISSELLSDHIAWFSFFDPDRVVALYSFTWLLPQTAKSLLIFFMRHREDDDSIQHSMTRILISLNEERKYFNQLRKELNMGGGQLRRNLDRLISRGQISKQTIGKNHYYSLTSHSPSPLN*
Ga0101450_104620	Ga0101450_1046202	F071205	MSFSQKQNIIFYVALTLSAFQLIQYLMSGGIFLTLLAGLVPFWLWSTRKKLLADVEIGSFDQVMSYIVVVYAAFAGLIAVLIFVFWLMYSSIDPALIESALADNPANNDLNEEELKALDQVMGNLPSLLPVLWLFLGLQSFSYLYYGIGVIRKXXXXXXXXVKSISGV*
Ga0101450_107789	Ga0101450_1077897	F074004	MANNVYSTIIFDKGSQEAEREFIRVFDHIEEIEERGLEFADFFRTNEEIVDNDFMETWVGPRKAEITKYMGTEVEVKSSWISPHVFLHGLLEHLQDIDPTVRLTMSYEDEFLNFAGVYVNEKNQEESGGWFKEQFDERAVEDDFLGFVEEVVEMWEEELCD*
Ga0101450_111062	Ga0101450_1110621	F087146	VTFTLDASWIDQRLRAANPDFFTSPISDGFIVRHNYNSHLFFPRKNMVKMTRIGLRKWTVTTRDVNYEYGFALGNEAGEILREIGPWVTTKQHGPKSGNGEFMDACTVTFWPYRNRLIPQKPNAAPGPLNVTACFASCTKTCELPNAPTPLASLDASQYTGGNTWGNAQISCNLGSQTTYNSTMNGMYINGNRQSVITCPYEIGPARYPNLTMEVVFQLDTTYDPTASYGWIFGHDDGGYDRSFIISDTRFGGGIGSGIGAVYDSGAATPSNGVWHHGLAVFRQGIVDGSYTALDGAISPVKATANNNEGEPDFTVGGLANDFGFPHEMKGWIRYFNFYDGALDESQIEAMYVRNTPWP*
Ga0101450_111787	Ga0101450_1117872	F041247	VSDFYSVEAKTLKFDKEMIVDFYNTIDQTKWVHRQDKLPQYWPIDENNTFDRTHEFYKQLQQNINVDIDEDRIYFSRVHPGGIPNHWDFENFTKLQFPVICDEPDDDWSKTPILFIDQFDQIVEKVEHTNNTPIIYSANYMHGTAKSLKNKNDRITLVVDIKFWFERVKIKYYEGTLFTNNKAFWSMA*
Ga0101450_111787	Ga0101450_1117874	F084452	MINKLIWNKVEEMFYWNISVDSPINQLPFTMEFILACQKEFSMKVRDKEYPIRLGGIMDWHDKTMGDFVKEIDEQYQNNYFVAENGTSTTGVVGEINDVNDKPITNKWNIRGEALVKRLQAMQKERPNLTILDMGCGVNEYKKHLNNVTGVDPYRKEADILCSQADFKPADDIKWDVIICFGPQNWYTYDEQYRNFMTLKKCLAPSGLLLWSHVHNYYKVFQPDHPHGHTWIHGDLEHAHKNSAFYFADRDWKYTWYFNWTEHAVNTLAGHVGLKINKTDYDHCNLYRPPMYRIFCEMSHV*
Ga0101450_112090	Ga0101450_1120902	F058738	MKNKLNLIEDLILSELRVFNMMQFFRGFITDTESRLIVYEVYCRDRDNAEPINVKWVEQQLEVSFPTAFKIIEKLINEGFLKKSRGAKDKRSYTLHPTNALKEGIKTYTMMWLEKAIELDLIKMDDKEKKELYKHVKIKAGAVKFDEFTQELQSKLHNDLISLND*
Ga0101450_112576	Ga0101450_1125766	F101216	LIIIVXXXXXXXXXXXXXXEYKNKYGYKYTKTAAPAGGNTYPKDSNGEIDYVAYESKSYSKQDYIDMYFFAKGLVIPHHYHGVSQVAATYLNREYDIPFIDYYKTLFSESKHGKGILNKEYINHTNSLRESLFKNKTWGRTIEGGDDFHIQDNGATASFLYKNIDEVHEEIIDICKREYKVDVSEACLFNKHIIDTYERDDTEKQFNKNWYSWFYDNKPLVAVNNIVSVAVYKYKDIVDHSKHLFWWGRKAKRCFLKSKEIML*
Ga0101450_112958	Ga0101450_1129584	F081298	MLLNKKSLFIPLVLLICSCNTSYQPXLQSKSIFIANDVDVRFVELVHKRFFHEIKTEQKVDILDLKYYEKPFFSGIGARPTNLEIYYDLSYRLGNENKIQNINVKDNVYVNEFNPIAQNNAVSQISYELMNQLIDELIMKVRN*
Ga0101450_113563	Ga0101450_1135633	F002151	MEYVIYTALACSFVALGLSVIAGARVGKFERATADTDWETLANLTGDIAALKRTAQTLNNRLNGMNKAVVPQDQIIQQMIEHQNVEQIRRGG*
Ga0101450_113806	Ga0101450_1138063	F099122	MTRLAQAYEDSKLLYFVTDGDGNCMLDRVSEVDARICAMKNGWSVGRHDVSPVTNYEPNEDLPFYNDDGTAITYANKDILTEEDFNEV*
Ga0101450_114069	Ga0101450_1140692	F027998	MIQFLFYDRTILSEELTNTNAAEIGITTITTAKITLLKNALNEGVILI*
Ga0101450_114354	Ga0101450_1143542	F042570	VLXIATGLIFASLLKSMSYAPDYEETLFNYAALGFAFVESFSFLLFFVAIAIFAM*
Ga0101450_115276	Ga0101450_1152762	F039118	MSETETETVIEESKTTTRTQRFAEWLMKRDERRQEKETSLEGLMKFNIFLSTLTLVSVAGATALDYAMIAWLWV*
Ga0101450_115572	Ga0101450_1155727	F054343	MFSNGVVGFLDPLDVDGTGYIHDGLCCNGEDFASGATGVRFHYTIMPWHTDLIDTGVGKFYTQGDETFQKYMWENLSEYYDRNTSNTFDLTIYPMGNIEVNYEKVHIKNHSVTVGVVGDLSAGEYEQWFYNHPTNGAVYWDSQEDDPVEI
Ga0101450_117592	Ga0101450_1175922	F030104	YFAFLAASKTETRSVKFVANQFFADFLDTFSLMLRFYILLFRMNVYDNLDDFFDSYYIFVGDFDDDEYLNELFLSIHGTILFTLDNNDDRSFLLEDENDFSNDFFYTYFVL*
Ga0101450_117893	Ga0101450_1178931	F104613	MNLVGLKELSELLEVPYEKLKVWKSRGRLPEPFQTISGTPVWDWDETEEEFRSIDINQNSGRPRKPKISIAGGLIEIDVKGNNKERDENISIRVNGKSXVSRTCKV*
Ga0101450_118024	Ga0101450_1180241	F058285	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVSGQPFGVLN
Ga0101450_118024	Ga0101450_1180243	F002374	MDQVLLYTSVILASVSFFLCCYACARVGKLLNSVKGLDWDIIASLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNNVTDIRKNNIGG*