Metagenome / Metatranscriptome Family F099122

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F099122
Family Type	Metagenome / Metatranscriptome
Number of Sequences	103
Average Sequence Length	88 residues
Representative Sequence	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDVSPVTNYQPNEDLPFYNDDGTAITYENKDILNEEDLQ
Number of Associated Samples	73
Number of Associated Scaffolds	103

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	81.55 %
% of genes near scaffold ends (potentially truncated)	25.24 %
% of genes from short scaffolds (< 2000 bps)	74.76 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (64.078 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (34.952 % of family members)
Environment Ontology (ENVO)	Unclassified (80.583 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.146 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102 1DelMOSum2010_100631176 2DelMOSum2010_100641147 3DelMOWin2010_100075525 4DelMOWin2010_100178245 5DelMOWin2010_100198811 6JGI25132J35274_10258171 7JGI25132J35274_10651603 8Ga0055584_1015485272 9Ga0055584_1017080892 10Ga0078893_1014978010 11Ga0075474_101481583 12Ga0075466_10762752 13Ga0075466_10976692 14Ga0098037_10129973 15Ga0098048_10372262 16Ga0098048_10417414 17Ga0098048_10442085 18Ga0098054_10427992 19Ga0098054_10633204 20Ga0098055_11775362 21Ga0075477_102268331 22Ga0075475_100547674 23Ga0070748_10569763 24Ga0070748_12732522 25Ga0098060_10820302 26Ga0098060_11325823 27Ga0098041_12580082 28Ga0098036_10210692 29Ga0075468_100381154 30Ga0075468_100734463 31Ga0075468_101166192 32Ga0075468_101691911 33Ga0101451_1097393 34Ga0101450_1138063 35Ga0070747_10637442 36Ga0070747_11196703 37Ga0110931_11322333 38Ga0115545_10924812 39Ga0115546_10835874 40Ga0115011_102259262 41Ga0098049_10467154 42Ga0098056_11796244 43Ga0098059_12835672 44Ga0180120_102340783 45Ga0181387_10322803 46Ga0181419_100125511 47Ga0181396_10261454 48Ga0181392_10303832 49Ga0187219_10634924 50Ga0187219_10989921 51Ga0181385_10640073 52Ga0181423_11853531 53Ga0181424_103483012 54Ga0211504_10689183 55Ga0211505_10582964 56Ga0213862_1000007022 57Ga0213862_102040602 58Ga0213860_100205654 59Ga0213863_100218675 60Ga0213869_100443994 61Ga0213868_100204985 62Ga0222716_101085314 63Ga0222715_1000149425 64Ga0212028_10727863 65Ga0196889_10842091 66Ga0196887_10095569 67Ga0196887_10220324 68Ga0196887_11297732 69Ga0228685_10487952 70Ga0228624_10927851 71Ga0208667_10025105 72Ga0208667_10601133 73Ga0208791_10098748 74Ga0208298_100192212 75Ga0208298_10128755 76Ga0208298_10224963 77Ga0208298_10565624 78Ga0208434_10655462 79Ga0208669_10150372 80Ga0208669_11031202 81Ga0208013_11377581 82Ga0208793_11036451 83Ga0208919_10406211 84Ga0208919_10586694 85Ga0208919_12345531 86Ga0209645_10168281 87Ga0209645_11261212 88Ga0208148_11115623 89Ga0208148_11243501 90Ga0209194_10874022 91Ga0208545_10116455 92Ga0209193_10248393 93Ga0209193_10744072 94Ga0208547_10148355 95Ga0228644_10352095 96Ga0209404_109214502 97Ga0228606_10608953 98Ga0183755_10097666 99Ga0315322_101149134 100Ga0315322_101245216 101Ga0315320_105324331 102Ga0315315_100075007 103Ga0316204_104505323
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102 1DelMOSum2010_100631176 2DelMOSum2010_100641147 3DelMOWin2010_100075525 4DelMOWin2010_100178245 5JGI25132J35274_10258171 6Ga0078893_1014978010 7Ga0098048_10442085 8Ga0075468_101166192 9Ga0208148_11115623
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102 1DelMOSum2010_100631176 2DelMOSum2010_100641147 3DelMOWin2010_100075525 4DelMOWin2010_100178245 5JGI25132J35274_10258171 6Ga0078893_1014978010 7Ga0098048_10442085 8Ga0075468_101166192 9Ga0208148_11115623
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 1.09% β-sheet: 28.26% Coil/Unstructured: 70.65%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 103 Family Scaffolds
PF13155	Toprim_2	13.59
PF01612	DNA_pol_A_exo1	1.94
PF11753	DUF3310	0.97
PF02867	Ribonuc_red_lgC	0.97
PF13482	RNase_H_2	0.97

Showing 1 to 5 of 5 entries

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COG ID	Name	Functional Category	% Frequency in 103 Family Scaffolds
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	0.97

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	35.92 %
Unclassified	root	N/A	64.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	0.97 %
Unclassified	root	N/A	64.08 %
Viruses	superkingdom	All Organisms → Viruses	34.95 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.97 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	1.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.01 %
Unclassified	root	N/A	64.08 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.01 %
Unclassified	root	N/A	64.08 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	1.94 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.01 %
Unclassified	root	N/A	64.08 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	1.94 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.97 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	33.01 %
Unclassified	root	N/A	64.08 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	1.94 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000101\|DelMOSum2010_c10063117	All Organisms → Viruses → Predicted Viral	1765	Open in IMG/M
3300000101\|DelMOSum2010_c10064114	All Organisms → Viruses → Predicted Viral	1743	Open in IMG/M
3300000117\|DelMOWin2010_c10007552	All Organisms → Viruses → environmental samples → uncultured marine virus	6407	Open in IMG/M
3300000117\|DelMOWin2010_c10017824	All Organisms → Viruses → Predicted Viral	3779	Open in IMG/M
3300000117\|DelMOWin2010_c10019881	All Organisms → Viruses → Predicted Viral	3524	Open in IMG/M
3300002483\|JGI25132J35274_1025817	All Organisms → Viruses → Predicted Viral	1357	Open in IMG/M
3300002483\|JGI25132J35274_1065160	Not Available	769	Open in IMG/M
3300004097\|Ga0055584_101548527	Not Available	687	Open in IMG/M
3300004097\|Ga0055584_101708089	Not Available	650	Open in IMG/M
3300005837\|Ga0078893_10149780	All Organisms → Viruses → Predicted Viral	4645	Open in IMG/M

Showing 1 to 10 of 103 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	34.95%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	3.88%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	6.80%
Oceanic	Environmental → Aquatic → Marine → Oceanic	34.95%
Pelagic	Environmental → Aquatic → Marine → Pelagic	4.85%
Strait	Environmental → Aquatic → Marine → Strait	8.74%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.83%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.97%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	34.95%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	33.98%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	8.74%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.83%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	4.85%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.88%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	21.36%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	1.94%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.97%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	34.95%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	4.85%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.91%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	1.94%
Marine Surface Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine Surface Water	0.97%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.97%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.85%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.94%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	9.71%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	8.74%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	3.88%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 73 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100631176	3300000101	Marine	MSIQKKPLIDRLAQVYEDTRLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSIGKHDEKFTSEQNSDGVPITYDNKDILNEEDLQ*
DelMOSum2010_100641147	3300000101	Marine	MHKKPLISRLAEIYEDQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILSEEDFDAM*
DelMOWin2010_100075525	3300000117	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTDYEPNPDLPFYNDDGTAITYENKDILNEEDLQ*
DelMOWin2010_100178245	3300000117	Marine	MHKKPLISRLTQIYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM*
DelMOWin2010_100198811	3300000117	Marine	PLISRLAEIYEDQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILSEEDFDAM*
JGI25132J35274_10258171	3300002483	Marine	AQAYEDSKLLYFVTDGEGNCMLDRVSEVDARIFAMKNGWSVGRYDEKDDTGVKINDQGLEVSYENKDELSEDDFASYGGM*
JGI25132J35274_10651603	3300002483	Marine	MHEKPLMTRLAQAYEDSKLLYFVTDGEGNCMLDRVSEVDARIFAMKNGWSVGRXDEKDDTGVKINDQGLEVSYENKDELSEDDFASYGGM*
Ga0055584_1015485272	3300004097	Pelagic Marine	MENKPLISRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM*
Ga0055584_1017080892	3300004097	Pelagic Marine	MHKKPLISRLAEIYEDQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILNEEDLQ*
Ga0078893_1014978010	3300005837	Marine Surface Water	MAKEPLMTRLAQAYEDSKLLYFVTDGDGNCMLDRVSEVDARICAMKNGWSVGRHDVSPVTNYKPNEDLPFYNDDGT
Ga0075474_101481583	3300006025	Aqueous	MHKKPLISRLAQIYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM*
Ga0075466_10762752	3300006029	Aqueous	MHKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDVSPVTNYQPNEDLPFYNDDGTAITYENKDILNEEDLQ*
Ga0075466_10976692	3300006029	Aqueous	MESKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIFAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDELSEDDFSNYGGM*
Ga0098037_10129973	3300006737	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDYVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEDDFSTYGGM*
Ga0098048_10372262	3300006752	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEDDFSTYGGM*
Ga0098048_10417414	3300006752	Marine	MHKKPLISRLAEIYEAQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILSEEDFDAM*
Ga0098048_10442085	3300006752	Marine	MHKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDDVSPVTNSDGIEINYANKDILNEEDLQ*
Ga0098054_10427992	3300006789	Marine	MHKKPLMTRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEDDFSTYGGM*
Ga0098054_10633204	3300006789	Marine	MSIQKKPLIARLAQVYEDTRLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSIGKHDEKFTSEQNSDGVPITYENKDILNEEDLQ*
Ga0098055_11775362	3300006793	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELTEDDFSTYGGM*
Ga0075477_102268331	3300006869	Aqueous	MHKKPLISRLAQIYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDD
Ga0075475_100547674	3300006874	Aqueous	MHKKPLISRLAQIYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEEDFSNYGGM*
Ga0070748_10569763	3300006920	Aqueous	MHKKPLISRLAQAYEDSKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTNYQPNEDLPFYNDDGTAITYENKDILNEEDLQ*
Ga0070748_12732522	3300006920	Aqueous	MHKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDVSPVTNYQPNEDLPFYNDDGTAITYENKDELSEDDFSTYGGM*
Ga0098060_10820302	3300006921	Marine	MHKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDYVSPVTDYEPNPNLPFYNDDGTAITYENKDILNEEDLQ*
Ga0098060_11325823	3300006921	Marine	MHKKPLIARLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDEKFTSEQNSDDVPVTYENKDELTQEQIDAL*
Ga0098041_12580082	3300006928	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDYVSPVTDYEPNPNLPFYNDDGTAITYENKDELSEEDINAM*
Ga0098036_10210692	3300006929	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEEDINAM*
Ga0075468_100381154	3300007229	Aqueous	MSRLVQAYEDSKLLYFVTDGEGNCMLDKVTHVDAQIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDELSEDDFSNYGGM*
Ga0075468_100734463	3300007229	Aqueous	MSIQKKPLITRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDEKFTSEQNSDDVPVTYENKDELTQEQIDAL*
Ga0075468_101166192	3300007229	Aqueous	MSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDVSPVTNYQPNEDLPFYNDDGTAITYENKDELSEDDFSTYGGM*
Ga0075468_101691911	3300007229	Aqueous	MESKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIFAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKD
Ga0101451_1097393	3300007263	Marine Surface Water	MTRLAQAYEDSKLLYFVTDGDGNCMLDRVSEVDARICAMKNGWSVGRHDVSPVTNYKPNEDLPFYNDDGTAITYANKDILTEEDFNEV*
Ga0101450_1138063	3300007266	Marine Surface Water	MTRLAQAYEDSKLLYFVTDGDGNCMLDRVSEVDARICAMKNGWSVGRHDVSPVTNYEPNEDLPFYNDDGTAITYANKDILTEEDFNEV*
Ga0070747_10637442	3300007276	Aqueous	LAEIYEDQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILNEEDLQ*
Ga0070747_11196703	3300007276	Aqueous	MESKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIFAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM*
Ga0110931_11322333	3300007963	Marine	MSRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDYVSPVTDYEPNPNLPFYNDDGTAITYENKDILNEEDLQ*
Ga0115545_10924812	3300009433	Pelagic Marine	MNNKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTNSDGVEVSYENKDILNEEDLQ*
Ga0115546_10835874	3300009435	Pelagic Marine	MNNKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTNSDGVEVSYENKDILDEEDLQ*
Ga0115011_102259262	3300009593	Marine	MAIQNKPLISRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAIKYGYSIGRHDEKDDTGVKINEEGVEITYENKDILTAEDFGGME*
Ga0098049_10467154	3300010149	Marine	MSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDDVSPVTNSDGIEINYANKDILNEEDLQ*
Ga0098056_11796244	3300010150	Marine	MTRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAI
Ga0098059_12835672	3300010153	Marine	MTRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEDDFSTYGGM*
Ga0180120_102340783	3300017697	Freshwater To Marine Saline Gradient	MESKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDIL
Ga0181387_10322803	3300017709	Seawater	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEEDINAM
Ga0181419_100125511	3300017728	Seawater	MNKKPLMTRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEEDINAM
Ga0181396_10261454	3300017729	Seawater	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIFAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELTEDDFSTYGGM
Ga0181392_10303832	3300017749	Seawater	MHKKPLIRRLAEIYEDQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILSEEDFDAM
Ga0187219_10634924	3300017751	Seawater	MHKKPLISRLAEIYEDQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILSEEDFQ
Ga0187219_10989921	3300017751	Seawater	MHKKPLMSRLSQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDVSPVTNYQPNEDLPFYNDDGTAITYENKDILNEE
Ga0181385_10640073	3300017764	Seawater	MSRLSQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDVSPVTNYQPNEDLPFYNDDGTAITYENKDILNEEDLQ
Ga0181423_11853531	3300017781	Seawater	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIFAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDE
Ga0181424_103483012	3300017786	Seawater	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM
Ga0211504_10689183	3300020347	Marine	MHKKPLISRLAEIYEDQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPDEDLPFYNDDGTAITYENKDILSEEDFDAM
Ga0211505_10582964	3300020352	Marine	MHKKPLIRRLAEIYEDQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPDEDLPFYNDDGTAITYENKDILSEEDFDAM
Ga0213862_1000007022	3300021347	Seawater	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTDYEPNPDLPFYNDDGTAITYENKDILNEEDLQ
Ga0213862_102040602	3300021347	Seawater	MHKKPLISRLTQIYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM
Ga0213860_100205654	3300021368	Seawater	MQKEPLMTRLAQAYEDSKLLYFVTDGEGNCMLDRVSEVDARICAMKNGWSVGRHDVSPVTNYKPNEDLPFYNDDGTAITYANKDILTEEDFNEV
Ga0213863_100218675	3300021371	Seawater	MHKKPLMSRLVQAYEDSKLLYFVTDGEGNCMLDKVTHVDAQIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDELSEDDFSNYGGM
Ga0213869_100443994	3300021375	Seawater	MHKKPLISRLAEIYEDQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILSEEDFDAM
Ga0213868_100204985	3300021389	Seawater	MHKKPLISRLAQIYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM
Ga0222716_101085314	3300021959	Estuarine Water	MSIQKKPLIDRLAQVYEDTRLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSIGKHDEKFTSEQNSEGVPITYENKDILNEEDLQ
Ga0222715_1000149425	3300021960	Estuarine Water	MHKKPLISRLAEIYEDQKYTYFVTDGEGNCVAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILSEEDFDAM
Ga0212028_10727863	3300022071	Aqueous	KPLISRLTQIYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM
Ga0196889_10842091	3300022072	Aqueous	MHKKPLISRLAQAYEDSKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTNYQPNEDLPFYNDDGTA
Ga0196887_10095569	3300022178	Aqueous	MESKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIFAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM
Ga0196887_10220324	3300022178	Aqueous	MSIQKKPLITRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDEKFTSEQNSDDVPVTYENKDELTQEQIDAL
Ga0196887_11297732	3300022178	Aqueous	MHKKPLISRLAQAYEDSKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTNYQPNEDLPFYNDDGTAITYENKDILNEEDLQ
Ga0228685_10487952	3300023701	Seawater	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEEDINAM
Ga0228624_10927851	3300024313	Seawater	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDLSPVTDYEPNPDLPFYNDDGTAITYENKDELS
Ga0208667_10025105	3300025070	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELTEDDFSTYGGM
Ga0208667_10601133	3300025070	Marine	MHKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDYVSPVTDYEPNPNLPFYNDDGTAITY
Ga0208791_10098748	3300025083	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAIT
Ga0208298_100192212	3300025084	Marine	MHKKPLISRLAEIYEAQKYTYFVTDGEGNCMAKGMTEIDARIHSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILSEEDFDAM
Ga0208298_10128755	3300025084	Marine	MHKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDDVSPVTNSDGIEINYANKDILNEEDLQ
Ga0208298_10224963	3300025084	Marine	MSIQKKPLIARLAQVYEDTRLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSIGKHDEKFTSEQNSDGVPITYENKDILNEEDLQ
Ga0208298_10565624	3300025084	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYE
Ga0208434_10655462	3300025098	Marine	MHKKPLMTRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEDDFSTYGGM
Ga0208669_10150372	3300025099	Marine	MHKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDYVSPVTDYEPNPNLPFYNDDGTAITYENKDILNEEDLQ
Ga0208669_11031202	3300025099	Marine	EDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEDDFSTYGGM
Ga0208013_11377581	3300025103	Marine	MHEKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDDVSPVTNSDGIEINYANKDILNEEDLQ
Ga0208793_11036451	3300025108	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEEDINAM
Ga0208919_10406211	3300025128	Marine	AYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELSEDDFSTYGGM
Ga0208919_10586694	3300025128	Marine	MHKKPLIARLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDEKFTSEQNSDDVPVTYENKDELTQEQIDAL
Ga0208919_12345531	3300025128	Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELS
Ga0209645_10168281	3300025151	Marine	AQAYEDSKLLYFVTDGEGNCMLDRVSEVDARIFAMKNGWSVGRHDEKDDTGVKINDQGLEVSYENKDELSEEDLQ
Ga0209645_11261212	3300025151	Marine	MEKEPLMTRLAQAYEDSKLLYFVTDGEGNCMLDRVSEVDARICAMKNGWSVGRHDVSPVTNYQPNEDLPFYNDDGTAITYANKDILTEEDFNEV
Ga0208148_11115623	3300025508	Aqueous	MSIQKKPLITRLAQAYEDSKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTNSDGVEVSYE
Ga0208148_11243501	3300025508	Aqueous	KLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTNYQPNEDLPFYNDDGTAITYENKDILNEEDLQ
Ga0209194_10874022	3300025632	Pelagic Marine	MNNKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDYVSPVTNSDGVEVSYENKDILN
Ga0208545_10116455	3300025806	Aqueous	MNKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDVSPVTNYQPNEDLPFYNDDGTAITYENKDELSEDDFSTYGGM
Ga0209193_10248393	3300025816	Pelagic Marine	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDVSPVTNYQPNEDLPFYNDDGTAITYENKDILNEEDLQ
Ga0209193_10744072	3300025816	Pelagic Marine	MNNKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDYVSPVTNSDGVEVSYENKDILNEEDLQ
Ga0208547_10148355	3300025828	Aqueous	KPLISRLAQIYEDTKLLYFVTDGEGNCMLDNVTQTDAYIYAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM
Ga0228644_10352095	3300026453	Seawater	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDVSPVTDYEPNPDLPFYNDDGTAITYENKDELS
Ga0209404_109214502	3300027906	Marine	MAIQNKPLISRLAQAYEDSKLLYFVTDGEGNCMLDNVTQTDAYIFAIKYGYSIGRHDEKDDTGVKINEEGVEITYENKDILTAEDFGGME
Ga0228606_10608953	3300028135	Seawater	MHKKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQADAYIYAMKNGWSVGRHDLSPVTDYEPNPDLPFYNDDGTAITYENKDELSEEDINAM
Ga0183755_10097666	3300029448	Marine	MHKKPLMSRLAQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM
Ga0315322_101149134	3300031766	Seawater	MHKKPLMSRLSQAYEDSKLLYFVTDGEGNCMLDRVTQVDAQIYAMKNGWSIGRHDVSPVTNYQPNEDLPFYNDDGTAITYENKDILNEEDLQ
Ga0315322_101245216	3300031766	Seawater	MESKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDELSEDDFSNYGGM
Ga0315320_105324331	3300031851	Seawater	LISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM
Ga0315315_100075007	3300032073	Seawater	MESKPLISRLAQVYEDTKLLYFVTDGEGNCMLDNVTQTDAYIFAMKNGWSVGRHDEKDDTGVKINDEGVEVSYENKDILSEDDFSNYGGM
Ga0316204_104505323	3300032373	Microbial Mat	YEDQKYTYFVTDGEGNCMAKGMTEIDARIYSMKDPNWSIGREESLSPVTDYEPNEDLPFYNDDGTAITYENKDILNEEDLQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F099122

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences