3300006898: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160400887

Overview

Basic Information

• IMG/M Taxon OID: 3300006898
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052573 | Ga0102522
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 160400887
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 43150982
• Sequencing Scaffolds: 5
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F051214	Metagenome	144	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F074985	Metagenome	119	N
F077405	Metagenome	117	N
F081456	Metagenome	114	N
F084342	Metagenome	112	N
F090517	Metagenome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0102522_100025	All Organisms → cellular organisms → Bacteria	39337
Ga0102522_100546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	4913
Ga0102522_113211	All Organisms → cellular organisms → Bacteria	730
Ga0102522_116269	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	639
Ga0102522_116610	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	630

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102522_100025	Ga0102522_10002510	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYSPKEYYDYWAAREGKPAPFFYEAKQYHVKSFMRVPGSTDLWITAELEHGHWYTFRMSDDQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0102522_100025	Ga0102522_10002511	F074985	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLLDHIKAMYID*
Ga0102522_100025	Ga0102522_1000252	F018385	MADLVNSWLPYQELSIEKDRDPVTDDEIIYGNNVKHFTLTIYSPEGRVSKYWNARILQDQLGRCRIACPRDGKILCFAWFEWTSYMFSHDGLNELVFMPRTNSRLPSTLWNTKEVK*
Ga0102522_100025	Ga0102522_1000254	F071329	MLPVAKIIISGLTSIGAGMIASKLTKPLVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHVEIED*
Ga0102522_100025	Ga0102522_1000255	F051214	MPGKIIAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWIA*
Ga0102522_100025	Ga0102522_10002550	F081456	MFEEPPIYYILISLIFLIVFGAISFATWLVWLTNVALFVKLVITAIGALFAAMTVILYTISAE*
Ga0102522_100025	Ga0102522_10002554	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELKHL*
Ga0102522_100025	Ga0102522_1000256	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLDIAQGDPSNVHPDFRA*
Ga0102522_100025	Ga0102522_1000259	F027205	VTSRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0102522_100546	Ga0102522_1005461	F077405	SNSRPRPWQGRALPTELFPRLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK
Ga0102522_113211	Ga0102522_1132112	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWAVWYFRLVDGGIMTFSSREWEQKDDVNHLTTIWMRPSLYDIERKEN*
Ga0102522_116269	Ga0102522_1162691	F084342	VSGQCGAKLFLLGGYLAIPICRPFFAQALKETLSQERSLGDAYDKDYQNEKALQWIHRRHILGI
Ga0102522_116610	Ga0102522_1166101	F090517	MNRRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSLELRQTVWNGTLEYKSAKYGPYSVYLSFVSDSVVEVSTFTTTDLTAAHDLEAPCSYTMDDRILTLRTQGDLYLRVSIDRSSWYLIRKEPSLLVFQANAGNPAAEATLTLRKKL*