Metagenome / Metatranscriptome Family F087255

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087255
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	70 residues
Representative Sequence	VSSLFRDPVPVTFVDPDNNEIATSWERSFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA
Number of Associated Samples	87
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	60.00 %
% of genes near scaffold ends (potentially truncated)	28.18 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (53.636 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (10.909 % of family members)
Environment Ontology (ENVO)	Unclassified (51.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (70.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 33.33% Coil/Unstructured: 66.67%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.168.1.1: HisI-like	d1zpsa1	1zps	0.68489
d.15.5.1: Staphylokinase/streptokinase	d1bmlc3	1bml	0.6716
b.118.1.1: FAS1 domain	d1o70a1	1o70	0.61818
b.118.1.1: FAS1 domain	d1o70a2	1o70	0.60155
d.15.6.1: Superantigen toxins, C-terminal domain	d3seba2	3seb	0.59644

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00909	Ammonium_transp	43.64
PF00448	SRP54	29.09
PF02881	SRP54_N	12.73
PF02463	SMC_N	2.73
PF04030	ALO	0.91
PF00501	AMP-binding	0.91
PF05239	PRC	0.91
PF08335	GlnD_UR_UTase	0.91
PF12681	Glyoxalase_2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	43.64
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.91
COG2844	UTP:GlnB (protein PII) uridylyltransferase	Signal transduction mechanisms [T]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
All Organisms	root	All Organisms	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
cellular organisms	root	All Organisms → cellular organisms	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	45.45 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.45 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	22.73 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	12.73 %
Jatrophihabitantales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales	0.91 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.91 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.91 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	12.73 %
Jatrophihabitantaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae	0.91 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.91 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.91 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	12.73 %
Jatrophihabitans	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans	0.91 %
Rothia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia	0.91 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.91 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.64 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	12.73 %
Jatrophihabitans telluris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → Jatrophihabitans telluris	0.91 %
Rothia dentocariosa	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	0.91 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.91 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.91 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725003\|GPWSG_F5G3JLY01C438E	Not Available	510	Open in IMG/M
3300001686\|C688J18823_10198337	Not Available	1355	Open in IMG/M
3300002568\|C688J35102_119247326	Not Available	661	Open in IMG/M
3300004081\|Ga0063454_100708615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	760	Open in IMG/M
3300005093\|Ga0062594_100590185	Not Available	970	Open in IMG/M
3300005293\|Ga0065715_10399117	Not Available	884	Open in IMG/M
3300005327\|Ga0070658_10129132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2105	Open in IMG/M
3300005327\|Ga0070658_10164457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1863	Open in IMG/M
3300005327\|Ga0070658_10407238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1169	Open in IMG/M
3300005329\|Ga0070683_101329439	Not Available	691	Open in IMG/M
3300005336\|Ga0070680_100087804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2572	Open in IMG/M
3300005336\|Ga0070680_100258715	Not Available	1472	Open in IMG/M
3300005338\|Ga0068868_100005750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	8729	Open in IMG/M
3300005339\|Ga0070660_100592281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	927	Open in IMG/M
3300005344\|Ga0070661_101643754	Not Available	544	Open in IMG/M
3300005355\|Ga0070671_101041214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	718	Open in IMG/M
3300005366\|Ga0070659_101517457	Not Available	597	Open in IMG/M
3300005435\|Ga0070714_102083412	Not Available	553	Open in IMG/M
3300005530\|Ga0070679_101182370	Not Available	710	Open in IMG/M
3300005535\|Ga0070684_100255577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1602	Open in IMG/M
3300005535\|Ga0070684_100641078	Not Available	989	Open in IMG/M
3300005554\|Ga0066661_10858329	Not Available	531	Open in IMG/M
3300005563\|Ga0068855_101078039	Not Available	841	Open in IMG/M
3300005568\|Ga0066703_10576857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	658	Open in IMG/M
3300005575\|Ga0066702_10174152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1289	Open in IMG/M
3300005587\|Ga0066654_10030173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2255	Open in IMG/M
3300005607\|Ga0070740_10161853	Not Available	961	Open in IMG/M
3300005614\|Ga0068856_101407582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jatrophihabitantales → Jatrophihabitantaceae → Jatrophihabitans → Jatrophihabitans telluris	712	Open in IMG/M
3300005616\|Ga0068852_102626970	Not Available	523	Open in IMG/M
3300005718\|Ga0068866_11038446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	584	Open in IMG/M
3300005842\|Ga0068858_100000002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	351633	Open in IMG/M
3300005937\|Ga0081455_10014949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7561	Open in IMG/M
3300005937\|Ga0081455_10380260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	986	Open in IMG/M
3300006034\|Ga0066656_10213710	Not Available	1231	Open in IMG/M
3300006358\|Ga0068871_102140193	Not Available	533	Open in IMG/M
3300006626\|Ga0101570_10798486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	587	Open in IMG/M
3300006627\|Ga0101571_12302112	Not Available	525	Open in IMG/M
3300006800\|Ga0066660_10075002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2309	Open in IMG/M
3300006804\|Ga0079221_10641291	Not Available	726	Open in IMG/M
3300006806\|Ga0079220_11538524	Not Available	573	Open in IMG/M
3300006881\|Ga0068865_101202364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	671	Open in IMG/M
3300006954\|Ga0079219_11666143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	589	Open in IMG/M
3300009093\|Ga0105240_10773138	Not Available	1042	Open in IMG/M
3300009098\|Ga0105245_10199892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1919	Open in IMG/M
3300009098\|Ga0105245_10814504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	972	Open in IMG/M
3300009176\|Ga0105242_10162642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1955	Open in IMG/M
3300009176\|Ga0105242_12563246	Not Available	559	Open in IMG/M
3300009545\|Ga0105237_10048918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4251	Open in IMG/M
3300010375\|Ga0105239_11479994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	784	Open in IMG/M
3300010375\|Ga0105239_11662133	Not Available	739	Open in IMG/M
3300012212\|Ga0150985_113331674	Not Available	1435	Open in IMG/M
3300012212\|Ga0150985_120292451	Not Available	514	Open in IMG/M
3300012390\|Ga0134054_1169344	Not Available	716	Open in IMG/M
3300012951\|Ga0164300_10884930	Not Available	563	Open in IMG/M
3300012960\|Ga0164301_11548992	Not Available	548	Open in IMG/M
3300012976\|Ga0134076_10574061	Not Available	524	Open in IMG/M
3300012977\|Ga0134087_10120339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1117	Open in IMG/M
3300012986\|Ga0164304_10881388	Not Available	698	Open in IMG/M
3300012989\|Ga0164305_10295109	Not Available	1195	Open in IMG/M
3300013100\|Ga0157373_10744205	Not Available	720	Open in IMG/M
3300013102\|Ga0157371_11390939	Not Available	545	Open in IMG/M
3300013105\|Ga0157369_10450220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1333	Open in IMG/M
3300013105\|Ga0157369_10526884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1222	Open in IMG/M
3300013105\|Ga0157369_10999481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	856	Open in IMG/M
3300013105\|Ga0157369_12532847	Not Available	519	Open in IMG/M
3300013105\|Ga0157369_12623025	Not Available	509	Open in IMG/M
3300013296\|Ga0157374_11465267	Not Available	706	Open in IMG/M
3300013296\|Ga0157374_12889562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Rothia → Rothia dentocariosa	508	Open in IMG/M
3300013306\|Ga0163162_11110750	Not Available	896	Open in IMG/M
3300013307\|Ga0157372_11251677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	857	Open in IMG/M
3300013307\|Ga0157372_12541800	Not Available	588	Open in IMG/M
3300013307\|Ga0157372_13366453	Not Available	509	Open in IMG/M
3300015358\|Ga0134089_10333107	Not Available	636	Open in IMG/M
3300015371\|Ga0132258_10396240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3429	Open in IMG/M
3300015372\|Ga0132256_103632013	Not Available	519	Open in IMG/M
3300015373\|Ga0132257_100662602	Not Available	1294	Open in IMG/M
3300015374\|Ga0132255_103866548	Not Available	636	Open in IMG/M
3300015374\|Ga0132255_105829969	Not Available	521	Open in IMG/M
3300017659\|Ga0134083_10215550	Not Available	796	Open in IMG/M
3300018431\|Ga0066655_10855341	Not Available	620	Open in IMG/M
3300018468\|Ga0066662_10029466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3233	Open in IMG/M
3300020069\|Ga0197907_10479003	Not Available	589	Open in IMG/M
3300020610\|Ga0154015_1520204	Not Available	764	Open in IMG/M
3300021362\|Ga0213882_10034423	Not Available	1968	Open in IMG/M
3300021953\|Ga0213880_10003666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2711	Open in IMG/M
3300022467\|Ga0224712_10467303	Not Available	607	Open in IMG/M
3300025899\|Ga0207642_10310999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	917	Open in IMG/M
3300025907\|Ga0207645_10178306	Not Available	1394	Open in IMG/M
3300025909\|Ga0207705_10096053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2175	Open in IMG/M
3300025909\|Ga0207705_10195712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1530	Open in IMG/M
3300025909\|Ga0207705_10762110	Not Available	752	Open in IMG/M
3300025909\|Ga0207705_11187307	Not Available	586	Open in IMG/M
3300025911\|Ga0207654_10672440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	742	Open in IMG/M
3300025914\|Ga0207671_10010049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7846	Open in IMG/M
3300025917\|Ga0207660_10161326	Not Available	1730	Open in IMG/M
3300025919\|Ga0207657_10334631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1195	Open in IMG/M
3300025919\|Ga0207657_10506954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	945	Open in IMG/M
3300025921\|Ga0207652_10281494	Not Available	1500	Open in IMG/M
3300025927\|Ga0207687_10145883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1800	Open in IMG/M
3300025927\|Ga0207687_10953651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300025928\|Ga0207700_11029303	Not Available	737	Open in IMG/M
3300025929\|Ga0207664_10229899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1612	Open in IMG/M
3300025934\|Ga0207686_10176343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1512	Open in IMG/M
3300025941\|Ga0207711_10008431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8619	Open in IMG/M
3300025949\|Ga0207667_10651658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1059	Open in IMG/M
3300025949\|Ga0207667_12187765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300026121\|Ga0207683_11264522	Not Available	684	Open in IMG/M
3300026552\|Ga0209577_10109137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2231	Open in IMG/M
3300031231\|Ga0170824_118179559	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	686	Open in IMG/M
3300033180\|Ga0307510_10266845	Not Available	1190	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.18%
Environmental	Environmental	41.82%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.18%
Terrestrial	Environmental → Terrestrial	41.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	40.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	37.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.09%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	1.82%
Roots	Host-Associated → Plants → Roots	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	23.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.64%
Loam	Environmental → Terrestrial → Soil → Loam	12.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.36%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	1.82%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	23.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.64%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.36%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.73%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	10.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	9.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.27%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.45%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.55%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.82%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	1.82%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725003	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005607	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006626	Soil microbial communities from the Leymus chinensis steppe, China - after adding 17.5 g N m- 2, yr-1	Environmental	Open in IMG/M
3300006627	Soil microbial communities from the Leymus chinensis steppe, China - after adding 28 g N m- 2, yr-1	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020610	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021953	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R07	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPWSG_02009600	2067725003	Soil	VSSLFRDPVPVTFVDPDNNEIATSWERTFMPRTGENVRIAGVPYIVERVGYDLPRDKIERVWIVLRPA
C688J18823_101983372	3300001686	Soil	ARRTELTPWQDLAVSSLFRDPVPVTYVDPDNNEIATSWDGSFLPRAGENVRIAGTPYLVERVGYDLPKDKIERVWIVLRPA*
C688J35102_1192473262	3300002568	Soil	MAGLFRDPIPVTFVDPDNNEIATSWDHSFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0063454_1007086152	3300004081	Soil	VSSLFRDPVPVTFVDPDNNEIATSWDHSFLPRAGENVRIAGVPYVVERVGYDLPKDKIERVWIVLRPA*
Ga0062594_1005901852	3300005093	Soil	VSSLFRDPVPVTFVDPDNNEIVTSWERSFLPRAGENVRIAGAPYLVERVGYDLPRDTIERVWIVLRPA*
Ga0065715_103991172	3300005293	Miscanthus Rhizosphere	SCWGSAPEAARQAARSKGAATACQDLAVSSLFRDPVPVTFVDPDNNEIVTSWERSFLPRAGENVRIAGAPYLVERVGYDLPRDTIERVWIVLRPA*
Ga0070658_101291322	3300005327	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATTWDHSFLPREGENVRIAGTPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0070658_101644573	3300005327	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNREIATTWERSFLPRAGENVRIAGTPYVVERVGYDMPKDKIERVWVVLRPA*
Ga0070658_104072382	3300005327	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATTWERSFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0070683_1013294391	3300005329	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWERSFLPRAGENVRIAGTPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0070680_1000878042	3300005336	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWERTFMPRTGENVRIAGVPYIVERVGYDLPRDKIERVWIVLRPA*
Ga0070680_1002587151	3300005336	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWERSFLPRTGENVRIAGAPYLVERVGYDLPRDKIERVWIVLRPA*
Ga0068868_1000057504	3300005338	Miscanthus Rhizosphere	VSSLFRDSVPVTFIDPDNNEIATSWDRNFVPRTGENVRIAGVPYIVERVGYDLPSDKIERVWIVVRPA*
Ga0070660_1005922812	3300005339	Corn Rhizosphere	LVSSLFRDPVPVTFVDPDNREIVTTWERSFLPREGENVRIAGVPYVVERVGYDMPKDKIERVWIVLQPA*
Ga0070661_1016437541	3300005344	Corn Rhizosphere	RDPVPVTFVDPDNNEIATSWERTFMPRTGENVRIAGVPYIVERVGYDLPRDKIERVWIVLRPA*
Ga0070671_1010412142	3300005355	Switchgrass Rhizosphere	MPCSESPSDTAGRPELAVSSLFRDPVPVTFVDPDNNEIATSWDHTFLPRAGENVRIPGVPYLVERVGYDLPKDQIEQVWSDLRPA*
Ga0070659_1015174571	3300005366	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIVTSWERSFLPRAGENVRIAGAPYLVERVGYDLPRDTIERVWIVL
Ga0070714_1020834121	3300005435	Agricultural Soil	VSSLFRDPVPVTFVDPDNNEIATTWERSFLPRAGENVRIAGAPYLVERVGYDLPRDKIERVWIVLRPA*
Ga0070679_1011823701	3300005530	Corn Rhizosphere	MVPSLFREPVPVTYIDADSNEIATTWAGSPLPRTGENVRIAGVPYLVERVGYDLPNDKIERVWIVVRPA*
Ga0070684_1002555772	3300005535	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWERSFLPRAGENVRIAGVPYVVERVGYDLPKDKIDRVWIVLRPA*
Ga0070684_1006410782	3300005535	Corn Rhizosphere	SVVSSLFRDPVPVTFVDPDNNEIATTWDHSFLPREGENVRIAGTPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0066661_108583292	3300005554	Soil	VSSLFRDPVPVTFIDPDNNEIATSWDGSFLPRAGENVRIAGAPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0068855_1010780391	3300005563	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWDRNFMPRAGENVRIAGVPYVVERVGYDLPSDKIERVWIVLRRA*
Ga0066703_105768571	3300005568	Soil	VAGLFSDPIPVTYVDPDNNVIATSWERSFLPRAGENVRIAGAPYLVERVGYDLPKDKIERVWIVLRPT*
Ga0066702_101741522	3300005575	Soil	VSSLFRDPVPVTFVDPDNHEIATSWDHSFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0066654_100301732	3300005587	Soil	VSSLFRDPVPVTYIDPDNNEIATSWDGSFLPRAGENVRIAGAPYLVERVGYDLPTDKIERVWIVLRPA*
Ga0070740_101618532	3300005607	Surface Soil	VTSLFRDPVPVTYVDPDNNEIATSWDRSVIPRAGENVRIAGVPYVVERVGYDLPSDKIERVWIVLRRA*
Ga0068856_1014075822	3300005614	Corn Rhizosphere	VPSLFRDPIVVNFVDEDNKEILRLADTTLLPRVGENVRIEGTPYVVERVGYDLPNGLYEKVWVVLRPA*
Ga0068852_1026269702	3300005616	Corn Rhizosphere	VPSLFRDPVPVTYIDADSNEIATSWEGSPLPRTGENVRIAGVPYLVERVGYDLPKDKIERVWIVVRPA*
Ga0068866_110384462	3300005718	Miscanthus Rhizosphere	MPCSGSPSDTAGRPELAVSSLFRDPVPVTFVDPDNNEIATSWDHTFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0068858_100000002262	3300005842	Switchgrass Rhizosphere	VPNPFRSSIPTTYVDADNTEVATSWDDSYVPRVGENVRLAGKPYVVERVGYDIPVDRIERVWIVVRPA*
Ga0081455_100149492	3300005937	Tabebuia Heterophylla Rhizosphere	MFRTSIAVTYVDEDDNEIATSWDDRFLPRVGENVRIVGKPYLVERVGYDIPTDDIERVWIVLRPA*
Ga0081455_103802602	3300005937	Tabebuia Heterophylla Rhizosphere	VASLFRGSVAIIYIDADNNEIATSWDDSFLPRVSENVRIGGKPYLVERVGYDLATDKIERIWIVLRPA*
Ga0066656_102137101	3300006034	Soil	RRSSRRSSSTPSSESPSDRAGSRVAVASLFRDPVPVTYVDPDNNEIATSWERSFLPRAGENVRIAGTPYVVERVGYDLPTDKIERVWIVLRPA*
Ga0068871_1021401931	3300006358	Miscanthus Rhizosphere	AVSSLFRDPVPVTFVDPDNNEIATSWDHTFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0101570_107984862	3300006626	Soil	MANLFREQVAVTYIDPDSNVIATSWDTSPLPRAGENVRIAGVPYLVERVGYDLPKDKIERIWIVLRPA*
Ga0101571_123021121	3300006627	Soil	VPSLFRDPVPVTYVDSDNNEIVTSWEGSLLPRTGENVRIADTPYLVERIGYDVPKDKIERVWIVLRPA*
Ga0066660_100750022	3300006800	Soil	VPSLFGDAVPVTFVDPDNHEIATLWDRSFLPRAGENVRIAGTPYVVERVGYDVPKDKIERVWIVLRPA*
Ga0079221_106412912	3300006804	Agricultural Soil	EQVAVTYIDPDNKEIATSWDSSTVPRTGENVRIAGVPYVVERVGYDLPADKIERIWIVLRPA*
Ga0079220_115385241	3300006806	Agricultural Soil	AAIDAPVGSESQRRRVRATRSSGAATACQDLAVSSLFRDPIPVTFVDPDNNEIATTWERSFLPRAGENVRIAGAPYLVERVGYDLPRDKIERVWIVLRPA*
Ga0068865_1012023642	3300006881	Miscanthus Rhizosphere	MPCSESPSDTAGRPELAVSSLFRDPVPVTFVDPDNNEIATSWDHTFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0079219_116661432	3300006954	Agricultural Soil	SIAIVASLFRDPIVVNFVDEDNNEILRLADTTLLPRVGENVRIEGRPYVVERVGYDLPKGLYENVWVVLRPA*
Ga0105240_107731381	3300009093	Corn Rhizosphere	VSSLFRDPVPVTFIDPDNNEIVTSWERSFLPRAGENVRIAGAPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0105245_101998923	3300009098	Miscanthus Rhizosphere	VSSLFRDAVPVTFIDPDNNEIATSWDHSFLPRAGENVRIAGVPYVVERVGYDLPKDKIDRVWIVLRPA*
Ga0105245_108145042	3300009098	Miscanthus Rhizosphere	LVSSLFRDPVPVTFVDPDNREIATTWERSFLPREGENVRIAGVPYVVERVGYDMPKDKIERVWIVLQPA*
Ga0105242_101626422	3300009176	Miscanthus Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWDHTFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0105242_125632462	3300009176	Miscanthus Rhizosphere	VSSLFRDQVPVTFIDPDNNEIATSWERSYLPRTGENVRIAGAPYLVERVGYDLPSDKIERVWIVLRPA*
Ga0105237_100489182	3300009545	Corn Rhizosphere	VFRDPVPVTFVDPDNNEIATSWDRSFLPRTGENVRIAGVPYLVERVGYDLPKDKVERVWIVLRPA*
Ga0105239_114799942	3300010375	Corn Rhizosphere	MAGVFREPVAVTYVDPDNNEIATSWEASPLPRAGENVRIAGVPYLVERVGYDLPKDKIERIWIVLRPA*
Ga0105239_116621332	3300010375	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWERSFLPRAGENVRIAGTPYLVERVGYDLPKDKIERVWIVLQPA*
Ga0150985_1133316741	3300012212	Avena Fatua Rhizosphere	VDPDNNEIATSWDHSFLPRAGENVRIAGVPYVVERVGYDLPKDKIERVWIVLRPA*
Ga0150985_1202924512	3300012212	Avena Fatua Rhizosphere	VAGLFSDPIPVTFVDPDNNEIATSWEGSYLPRAGDNVRIGGTPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0134054_11693442	3300012390	Grasslands Soil	FSDPIPVTYVDPDNNVIATSWERSFLPRAGENVRIAGAPYLVERVGYDLPTDKIERVWIVLRPA*
Ga0164300_108849301	3300012951	Soil	PVPVTFVDPDNNEIATSWERSFLPRVGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0164301_115489922	3300012960	Soil	SLFRDPVPVTFVDPDNHEIATSWDHTFLPRAGENVRIAGVPYLVERVGYDMPKDKIERVWIVLRPTCAPN*
Ga0134076_105740611	3300012976	Grasslands Soil	SLFRDPVPVTYVDPDNNEIATSWDGSFLPRAGENVRIAGAPYLVERVGYDLPADKIERVWIVLRPA*
Ga0134087_101203392	3300012977	Grasslands Soil	VTYVDPDNNEIATSWDGSFLPRAGENVRIAGAPYLVERVGYDLPADKIERVWIVLRPA*
Ga0164304_108813882	3300012986	Soil	RRRPAGRRIAVSSLFRDPVPVTFVDPDNHEIATSWDHSFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0164305_102951092	3300012989	Soil	LFRDPVPVTFVDPDNHEIATSWDHTFLPRAGENVRIAGVPYLVERVGYDMPKDKIERVWIVLRPA*
Ga0157373_107442052	3300013100	Corn Rhizosphere	QAARSKDAATACQDLAVSSLFRDPVPVTFVDPDNNEIVTSWERSFLPRAGENVRIAGAPYLVERVGYDLPRDTIERVWIVLRPA*
Ga0157371_113909391	3300013102	Corn Rhizosphere	VTFVDPDNNEIATSWERTFMPRTGENVRIAGAPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0157369_104502202	3300013105	Corn Rhizosphere	VFRDPVPVTFVDPDNNEIATSWDRSFLPRTGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0157369_105268842	3300013105	Corn Rhizosphere	VFRDPVPVTFVDPDNNEIATSWDRSFLPRTGENVRIAGVPYLVERVGYDLPKDKVERVWVVLRLA*
Ga0157369_109994812	3300013105	Corn Rhizosphere	MPSLFRDPVAVTYIDPDNNEIATSWDNTLLPRVGENVRIGGTPYVVERVGYDLPKDKIERVWVVLRPA*
Ga0157369_125328472	3300013105	Corn Rhizosphere	AWQDRPVPSLFRDPVPVTYIDADSNEIATSWEGSPLPRTGENVRIAGVPYLVERVGYDLPKDKIERVWIVVRPA*
Ga0157369_126230251	3300013105	Corn Rhizosphere	VASLFRDPVAVTYINADNNEIATSWDSSVLPRTGENVRIAGSPYLVQRVGYDMPTDKIERVWVVLRPA*
Ga0157374_114652671	3300013296	Miscanthus Rhizosphere	LGEASYSSLVSSLFRDPVPVTFVDPDNREIVTTWERSFLPREGENVRIAGVPYVVERVGYDMPKDKIERVWIVLQPA*
Ga0157374_128895621	3300013296	Miscanthus Rhizosphere	VASLFRDALPITYIDPDNNEIVTTWDDSSPLLPRVGENVRIAHKPYVVERVGYDVPKDKVEHVWIVVRPA*
Ga0163162_111107501	3300013306	Switchgrass Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWDRTFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0157372_112516772	3300013307	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATTWERSFLPREGENVRIAGTPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0157372_125418001	3300013307	Corn Rhizosphere	VSSLFRDPVPVTFVDPDDNEIATTWERSFLPRAGENVRIAGTPYLVERVGYDLPKDK
Ga0157372_133664531	3300013307	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWERSFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0134089_103331072	3300015358	Grasslands Soil	VSSLFRDPVPVTYIDPDNNEIATSWDHSFLPRAGENVRIAGAPYLVERVGYDLPTDKIERVWIVLRPA*
Ga0132258_103962404	3300015371	Arabidopsis Rhizosphere	VASLFRDPVAVTYIDADSNEIATSWESSVLPRTGENVRIAGSPYLVQRVGYDMPTDKIERVWIVLRPA*
Ga0132256_1036320132	3300015372	Arabidopsis Rhizosphere	VSSLFRDPVPVTFVDLDNNEIATSWERSFLPRTGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA*
Ga0132257_1006626021	3300015373	Arabidopsis Rhizosphere	VSSLFRDQVPVTFIDPDNNEIATSWERSYLPRAGENVRIAGAPYLVERVGYDLPSDKIERVWIVLRPA*
Ga0132255_1038665481	3300015374	Arabidopsis Rhizosphere	VASLFRDPVAVTYIDADSNEIATSWESSVLPRTGENVRIAGSPYLVQRVGYDMPTDKI
Ga0132255_1058299691	3300015374	Arabidopsis Rhizosphere	VRRGDAAWQDLAVSSLFRDPVPVTFIDPDNNEIATSWERSFLPRAGENVRIAGAPYLVERVGYDLPRDTIERVWIVLRPA*
Ga0134083_102155502	3300017659	Grasslands Soil	VAGLFSDPIPVTYVDPDNNVIATTWERSFLPRAGENVRIAGAPYLVERVGYDLPTDKIERVWIVLRPA
Ga0066655_108553412	3300018431	Grasslands Soil	VPVTYIDPDNNEIATSWDGSFLPRAGENVRIAGAPYLVERVGYDLPADKIERVWIVLRPA
Ga0066662_100294663	3300018468	Grasslands Soil	VTSSGAESVRDAVPVTFVDPDNHEIATLWDRSFLPRAGENVRIAGTPYVVERVGYDVPKDKIERVWIVLRPA
Ga0197907_104790032	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	VSSLFRDPVPVTFVDPDNREIATTWERSFLPREGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA
Ga0154015_15202042	3300020610	Corn, Switchgrass And Miscanthus Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATTWERSFLPRAGENVRIAGTPYLVERVGYDLPKDKIERVWIVLRPA
Ga0213882_100344231	3300021362	Exposed Rock	MPGLFREAIAVTYIDPDNNEIATSWESSPLPRAGENVRVAGVPYLVERVGYDLPKDKIERIWIVLRPA
Ga0213880_100036662	3300021953	Exposed Rock	VSSLFRDPVPVTYVDPDNNEIVTSWDRGVIPRAGENVRIAGVPYVVERVGYDVPADKIERVWIVLRRA
Ga0224712_104673032	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	TFVDPDNNAIATTWERSFLPREGENVRIAGTPYLVERVGYDLPKDKIERVWIVLRPA
Ga0207642_103109992	3300025899	Miscanthus Rhizosphere	MPCSGSPSDTAGRPELAVSSLFRDPVPVTFVDPDNNEIATSWDHTFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA
Ga0207645_101783061	3300025907	Miscanthus Rhizosphere	FVDPDDNEIATSWERSFLPRAGENVRIGGAPYLVERVGYDMPRDKIERVWIVLRPA
Ga0207705_100960532	3300025909	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNREIATTWERSFLPRAGENVRIAGTPYVVERVGYDMPKDKIERVWVVLRPA
Ga0207705_101957122	3300025909	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATTWDHSFLPREGENVRIAGTPYLVERVGYDLPKDKIERVWIVLRPA
Ga0207705_107621102	3300025909	Corn Rhizosphere	PVPVTFVDPDNNEIATTWERSFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRP
Ga0207705_111873072	3300025909	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATTWDHSFVPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA
Ga0207654_106724402	3300025911	Corn Rhizosphere	VPSLFRDPVPVTYIDADSNEIATSWEGSPLPRTGENVRIAGVPYLVERVGYDLPKDKIERVWIVVRPA
Ga0207671_100100492	3300025914	Corn Rhizosphere	VFRDPVPVTFVDPDNNEIATSWDRSFLPRTGENVRIAGVPYLVERVGYDLPKDKVERVWIVLRPA
Ga0207660_101613261	3300025917	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNEIATSWERSFLPRTGENVRIAGAPYLVERVGYDLPRDKIERVWIVLRPA
Ga0207657_103346312	3300025919	Corn Rhizosphere	VSSLFRDSVPVTFIDPDNNEIATSWDRNFVPRTGENVRIAGVPYIVERVGYDLPSDKIERVWIVVRPA
Ga0207657_105069542	3300025919	Corn Rhizosphere	LVSSLFRDPVPVTFVDPDNREIVTTWERSFLPREGENVRIAGVPYVVERVGYDMPKDKIERVWIVLQPA
Ga0207652_102814941	3300025921	Corn Rhizosphere	VPAAGAARQASRSYGAATAWQDLAVSSLFRDPVPVTFVDPDNNEIATSWERSFLPRTGENVRIAGAPYLVERVGYDLPRDKIERVWIVLRP
Ga0207687_101458832	3300025927	Miscanthus Rhizosphere	MPCSESPSDTAGRPELAVSSLFRDPVPVTFVDPDNNEIATSWDHSFLPRAGENVRIAGVPYVVERVGYDLPKDKIDRVWIVLRPA
Ga0207687_109536512	3300025927	Miscanthus Rhizosphere	LVSSLFRDPVPVTFVDPDNREIATTWERSFLPREGENVRIAGVPYVVERVGYDMPKDKIERVWIVLQPA
Ga0207700_110293032	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	PSYGAATAWQDLAVSSLFRDPVPVTFVDPDNNEIATTWERSFLPRAGENVRIAGAPYLVERVGYDLPRDKIERVWIVLRPA
Ga0207664_102298992	3300025929	Agricultural Soil	SSVFRDPVPVTFVDPDNNEIATSWERSFLPRAGGNVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA
Ga0207686_101763432	3300025934	Miscanthus Rhizosphere	LVSSLFRDPVPETFVDPDNREIATTWERSFLPREGENVRIAGVPYVVERVGYDMPKDKIERVWIVLQPA
Ga0207711_100084314	3300025941	Switchgrass Rhizosphere	VPNPFRSSIPTTYVDADNTEVATSWDDSYVPRVGENVRLAGKPYVVERVGYDIPVDRIERVWIVVRPA
Ga0207667_106516582	3300025949	Corn Rhizosphere	VSSLFRDPVPVTFVDPDNNAIATTWERSFLPREGENVRIAGTPYLVERVGYDLPKDKIERVWIVLRPA
Ga0207667_121877652	3300025949	Corn Rhizosphere	MAGVFREPVAVTYVDPDNNEIATSWEASPLPRAGENVRIAGVPYLVERVGYDLPKDKIERIWIVLRPA
Ga0207683_112645222	3300026121	Miscanthus Rhizosphere	ESPSDTAGRPELAVSSLFRDPVPVTFVDPDNNEIATSWDHTFLPRAGENVRIAGVPYLVERVGYDLPKDKIERVWIVLRPA
Ga0209577_101091372	3300026552	Soil	VPSLFGDAVPVTFVDPDNHEIATLWDRSFLPRAGENVRIAGTPYVVERVGYDVPKDKIERVWIVLRPA
Ga0170824_1181795591	3300031231	Forest Soil	SLFRDAVPITYIDPDNNEIATTWDDSSPLLPRVGENIRIAHKPYLVERVGYDLPIDRIEHVWIVVRPA
Ga0307510_102668451	3300033180	Ectomycorrhiza	VASLFRDAIPITYIDPDNNEIATTWDDSSPLLPRVGENVRIAHKPYLVERVGYDLPMDRIEHVWIVVRPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087255

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences