3300006626: Soil microbial communities from the Leymus chinensis steppe, China - after adding 17.5 g N m- 2, yr-1

Overview

Basic Information

• IMG/M Taxon OID: 3300006626
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117801 | Gp0125025 | Ga0101570
• Sample Name: Soil microbial communities from the Leymus chinensis steppe, China - after adding 17.5 g N m- 2, yr-1
• Sequencing Status: Permanent Draft
• Sequencing Center: Chengdu Institute of Biology, Chinese Academy of Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 314721732
• Sequencing Scaffolds: 33
• Novel Protein Genes: 34
• Associated Families: 32

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
Not Available	7
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y81	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → unclassified Candidatus Eremiobacteraeota → Candidatus Eremiobacteraeota bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp. DSM 44511	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium yanoikuyae	1
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: the Inner Mongolia Grassland Ecosystem Research Station (IMGERS), China
• Coordinates
  • Lat. (^o): 43.63
  • Long. (^o): 116.7
  • Alt. (m): N/A
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000230	Metagenome / Metatranscriptome	1517	Y
F003605	Metagenome / Metatranscriptome	477	Y
F004245	Metagenome	447	Y
F005005	Metagenome / Metatranscriptome	415	Y
F006607	Metagenome / Metatranscriptome	369	Y
F012145	Metagenome	283	Y
F014168	Metagenome / Metatranscriptome	265	Y
F030746	Metagenome / Metatranscriptome	184	Y
F031172	Metagenome / Metatranscriptome	183	Y
F032371	Metagenome / Metatranscriptome	180	Y
F033870	Metagenome / Metatranscriptome	176	Y
F034918	Metagenome / Metatranscriptome	173	Y
F035454	Metagenome	172	Y
F038868	Metagenome / Metatranscriptome	165	Y
F043376	Metagenome / Metatranscriptome	156	Y
F049102	Metagenome / Metatranscriptome	147	N
F051097	Metagenome / Metatranscriptome	144	Y
F053270	Metagenome / Metatranscriptome	141	Y
F061129	Metagenome / Metatranscriptome	132	Y
F063005	Metagenome / Metatranscriptome	130	Y
F066027	Metagenome	127	Y
F067704	Metagenome / Metatranscriptome	125	Y
F067705	Metagenome / Metatranscriptome	125	Y
F072456	Metagenome	121	Y
F072702	Metagenome / Metatranscriptome	121	Y
F073822	Metagenome / Metatranscriptome	120	Y
F074831	Metagenome / Metatranscriptome	119	Y
F077506	Metagenome / Metatranscriptome	117	Y
F087255	Metagenome / Metatranscriptome	110	Y
F090625	Metagenome / Metatranscriptome	108	Y
F094083	Metagenome / Metatranscriptome	106	Y
F097858	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101570_10048292	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	625
Ga0101570_10051249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	869
Ga0101570_10110299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	808
Ga0101570_10168723	Not Available	742
Ga0101570_10232320	All Organisms → cellular organisms → Bacteria	510
Ga0101570_10244865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	795
Ga0101570_10297573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	681
Ga0101570_10304232	Not Available	500
Ga0101570_10306960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	691
Ga0101570_10361432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium → unclassified Lichenibacterium → Lichenibacterium sp. 6Y81	845
Ga0101570_10418750	Not Available	568
Ga0101570_10528698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	618
Ga0101570_10546971	All Organisms → cellular organisms → Bacteria	507
Ga0101570_10551529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	546
Ga0101570_10574599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Eremiobacterota → unclassified Candidatus Eremiobacteraeota → Candidatus Eremiobacteraeota bacterium	2305
Ga0101570_10586040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → unclassified Geodermatophilus → Geodermatophilus sp. DSM 44511	504
Ga0101570_10615362	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	689
Ga0101570_10626778	Not Available	686
Ga0101570_10628401	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	738
Ga0101570_10649086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525
Ga0101570_10713097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	543
Ga0101570_10739941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	631
Ga0101570_10798486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	587
Ga0101570_10853464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	571
Ga0101570_10924705	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	509
Ga0101570_10976371	Not Available	809
Ga0101570_11084105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	703
Ga0101570_11400728	Not Available	518
Ga0101570_11419830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → Sphingobium yanoikuyae	642
Ga0101570_11803300	All Organisms → Viruses → Predicted Viral	1432
Ga0101570_11914534	Not Available	562
Ga0101570_11918160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575
Ga0101570_12317915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	921

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101570_10048292	Ga0101570_100482922	F034918	MNWDNLLVIGRDRDSFKVLVGRKIRERRHDERQLAEHCTTKHQLQARNSCVADARSYRVARRLPVPAAARSRWKALIS
Ga0101570_10051249	Ga0101570_100512492	F033870	RGVLLQRVEQGIESSGLKNYCLYLVAKRLTFAGPMNTAALSEQLRLNPHEVEDNLQLMLKKDMVRQEGEAWVITDAGRAALVAANDSGGQVLEDIRGAIGASACDQLVAGMRDALAALRRAA*
Ga0101570_10110299	Ga0101570_101102992	F067705	MRVKAIAVLVIVAVSAGLFLAMHQENRADAAAGNCYMATDGPSTPTICQ*
Ga0101570_10168723	Ga0101570_101687232	F067704	MNVKTTHVEQLWQSPDGKRKIWEVSLKGDDGREYRLKTYSPKISQLGFSGEVKSYVNYRGERFVRQVLSAPRPSFGRDDSAIRAQWAIGQAINLASVKMDKEAITLPVIETYAKELFATVSRVKGEQISPELEREAEQYIKGFVQIPSAI*
Ga0101570_10232320	Ga0101570_102323202	F063005	LLVFFVVQLALWPLAVFEVRRPLRELVREAGFSVLRRPLGFAGLGLALLLVNAVGVAAAILPFLSLTIAYSFLVSAHYALPKNPAREV*
Ga0101570_10244865	Ga0101570_102448651	F066027	EIEWKPLPTPMWPERSVMADWSGLILEASFEQGVPTWKVQRRMGKNALPTLVASGTADSLKAAKAAALHVAETELRSSSQGQPAE*
Ga0101570_10297573	Ga0101570_102975732	F014168	MSADRLRLCLIAALVVAAIVSVIGNKANSPWLGWVSFAVFLCAIVLYAAWRRTALQERRGRVFDREAKTDETRTRPDQ*
Ga0101570_10304232	Ga0101570_103042322	F049102	MHTPDADYFRHQAATCLRLAQLCRDLEVARRLFGMAGEFKSKAAEMDAGLQTMTVPSIEPSCGPARD*
Ga0101570_10306960	Ga0101570_103069602	F043376	MSKTATFHIRATKRVPRWSMTRYAAARPSTWLALHSAPHASPKPIVNATQSKPISQTCGHNNLIPEPRRLPHTPTTAIKSP*
Ga0101570_10361432	Ga0101570_103614322	F035454	MVEQVGRAIAKADGARFEDDPAPFQKLALAALQPLARPSEVMVDAAYDAGRFAEHWAINSRREFRKAVRAMIQAALEGR*
Ga0101570_10418750	Ga0101570_104187501	F031172	MGLMDNIKKAQEMAQQAAQGGANTANPSAGDVEYANLAMKLNQNGLPGTATINSVTESGEGSDPVNKAYDLAVSVELENGQSYDTTVHQYLTQDAVNAYQPGGRFQVQADPDDTSKVMLYGQA*
Ga0101570_10445030	Ga0101570_104450301	F000230	MSEQAKKVKHENIPQWAQGLYYNSGLIKEVLVYYDDEAIYFEHKGKESGIVRFTFEMIEGLKIVEDEAEHDGSPQ*
Ga0101570_10528698	Ga0101570_105286981	F097858	MSTRHDICAIERTAATAGSAATLILGSLLLLISP*
Ga0101570_10546971	Ga0101570_105469711	F012145	MPKPPETTRTTPTRQIRPPPLSQHLREFASRPGAWVVLGRNVIPVVGIYVFCWSVAVAVFNYWFDGLTALAAIVAAMIPRAMRETQSKRDRATLVGNVVRGV
Ga0101570_10551529	Ga0101570_105515291	F051097	FMAPQTDLPAVWDSYQNVVKNLRDKGLTEGITITSHYEDRTGEPYQTAWTINPLLLEGSGYSDYKGYEDEVQAQEDQARALEKIAEDIEELKSAMEHPPNGRVG*
Ga0101570_10574599	Ga0101570_105745994	F053270	LANITEVPSKVYLRFAQQSDAQRLFTDKVIGGPPPRRETWPQRVTKWLSEQQAGRRVILIAEDQTGLLGMVQVVFAFPPGYQDAEAANGMDVAMMEGLRLRPGSPPEVGNRLVEEVQRIAGKRNVKTLTFLLPMNDNRALRQAKMWGFEEFRIMPEPDKMLAFFRKSID*
Ga0101570_10586040	Ga0101570_105860401	F006607	HRGVLPSRFRRVDSAPVALGVITVTEPHDWPLEQPAEGTLRPWYFRATGYLMVLFRDPDEAQRAQRGLLQRKVPQEELRLYESEEILRIVARLQEERSIVAKAVAALVADPSVKEHFLDTARTGGAALWLVAATRDRADHLVGLLADYSYSFLRYYGDDGVADVERDP
Ga0101570_10615362	Ga0101570_106153621	F004245	DVRDDWAWRSDVSVNNGLQLMRDLRLNLGADVRGDVWNRFDAFNTVGVGASASLRYRFGLGRRAPWVLFEDRFGYDRFHDTPQSGNDNVVNLRGGVAFTDRIALEGGYAFESFVAPNDFYDRQLHRADARVVFDVTSSLQLALGYSYQEGDVISYAVPPRPDIARFSVEREDEDEFGQPLRTAYKLLGRTHGLSFSAAYQLTKHASVQLGYEYAVTTHDPLEYEKHLVE
Ga0101570_10626778	Ga0101570_106267781	F077506	LNYLKRHDFAVHGGDLVEWFVRAGEGIVVNDFTVLRDNEVAEIVEMLPGRIYSVDLFKAWEGVFFSEEQCIYLGVWHDNVHNLRSDGQTGLAIVGLWHVLCYWLQKAHYPDDMQDVPPSELAWHYIRKTERWVTANLRRNTVRRADVLSTISAQQGDALFLSPPARNSFRSADARIWMWEAWWQGNPYYNIEHSYRDSLFGARSSDENGYARAFSSVLSSAQEYPVVI
Ga0101570_10628401	Ga0101570_106284012	F072702	ELIACRRKHLNTHYSGKRGKGDRFDHAKGNVKAADVLLDWRVERIVLLGKNVARCFGLRDVPFLAEIHTYGRRFLFFPHPTGTNRWWNERRNERRARQLLQRFLRGEKVPAGFRKSGPSRRSRLSRN*
Ga0101570_10649086	Ga0101570_106490861	F074831	LLTYQLSGTITDAAGKPVQGAVVITRTQDRDFWTHSSASDANGHYTSFFAASDETSADPVSLAVGVALGSTAYGGNVGQNANFARLKSSTMNIQLGSGTSYTVQQPRSFTGAVYSGLVVGVAAGGRVIKPISETWPTANGAFSMTLPASVRGKTLTFWENQRQSFSRFTAAPGR
Ga0101570_10713097	Ga0101570_107130971	F030746	GDPAGTVATCTAGLLVFSATLCWNKVEDQPQAPTLPTLPETARCSVVETDDPETGRREILGEILALSERDFGSALDNVLRSLTTSAALSDAVLETRAARVTPPASAPATTLQSLALDLRDAGFAVRFAPSWTPVSEGAVGLGILGAEQELQSFIDAHLSWRVP*
Ga0101570_10739941	Ga0101570_107399411	F033870	MNVSMEAPRTPQHDLVAMTAALRGALMQRVEQGIQSSGLATYYAYLVAKRLMFADPQTAATLSEQLRQNPRVIEDTLCQMSGQGLATREGDAWHITDAGRNALVSANDTGTEVLNDIREAIGASACDQLVTGMRDALAALR
Ga0101570_10798486	Ga0101570_107984862	F087255	MANLFREQVAVTYIDPDSNVIATSWDTSPLPRAGENVRIAGVPYLVERVGYDLPKDKIERIWIVLRPA*
Ga0101570_10853464	Ga0101570_108534642	F094083	FIRSSPSVVLATANLRHKPLDDHAFDTMQHWRRMAESERGNAVHWYHHLRGIGDVGCCLTVDQGARGAVAHFTATAPHPRRVLPKPVVRLALSSWSYLKLAGLARIAEAHDVDLA*
Ga0101570_10924705	Ga0101570_109247051	F073822	VSVATVLSTVGNDIKSFYTKLAADFQKAKQAWLIISSPQTRAVLLTVGSDAIKTVKDATAAASGKGLSLSLDEAVIADIKQLIADAETGDGVIQSDLKALGLIA*
Ga0101570_10976371	Ga0101570_109763711	F067704	MNVTTINSEQVWQSSDGQRTIWEVTLKGDDDKEYKLKTYSSKIAQLGFKGEVRSYLNPRGERFVRQLPSTKPAFQRDDYAIRAQWAIGQAINLASVKMEKEAITLPVIEEYAKELFETVTRVKGDAPSEEESKAAEGYIKGFTSAPSLF*
Ga0101570_11084105	Ga0101570_110841051	F005005	YTYKDELHPRLTGTIVVKGAPPTLTLAASRAYTTFGDDATLSGVVSDHRAGEQVTIFYQPYPQPNLIQRTVVVTTAGGAYSFLISPEVLTTYQAFWKGAYSAPTTVQVQPKLSIGRDVVWILHAAAGHTMAGRDVLFQRLNTATGQWVTLVKTMLNARSSARVTVRLPKGVNHLRLAMSVNEAGAGYLAGFSPILDWRER*
Ga0101570_11400728	Ga0101570_114007281	F072456	CRNLPARMLRRTWWLIPGVALLAMGIGCGIAIRRDLSTVPPGQVGFDDMCGLQEYFDALEIKTSPPPRVVSALDLEGESGGKAVRGGKETFAFDSDFLLHHLRRVLHENWRRLPDKLDTADRVDVEVKWSEKAGAKRVVTDAPPR*
Ga0101570_11419830	Ga0101570_114198301	F032371	MRVAVLLAFFVLAAPAAAQRQKLDTLTPAEAISRAAAASPKPVRALFQLKVANAAKSRGGYYLDSEKNFRSPSNLGVVIRASAMPGLTEKYGADLKSALVGKTIKVIGQVRRISIGKAKTATATEVEVTHAGQILSVS*
Ga0101570_11803300	Ga0101570_118033002	F003605	MAVGDQATAAGYDLVPDTGEEGRVRWGAREINRTRDYIAAVLAMIPVGKTGFRNASGISSGTADPSGGTDGDIYFKIVS*
Ga0101570_11914534	Ga0101570_119145341	F061129	VERYGASVWTPPHAVWRKIPNPATTDELPDGIEALELDGEPQQVVFFVPEHATLVTGDVLTGRDGVMHVFVDEADREPLLASLERIAELPIERVIVPHCETPIFVDGAARIRAAVAEARQS*
Ga0101570_11918160	Ga0101570_119181602	F038868	MESHGNWPASARLPIPGNAEWVWWVVAAIVIAIVAAAADSVGAAQWVEFMKWTTAAYLISRGIAKASRVLEQ*
Ga0101570_12317915	Ga0101570_123179151	F090625	MLLALTGLLIGLGAFGHSFMGRKALDAGLASLAIDMHTDKLIYLVWYFCGGCMLVFGVLVIRGAWMAMRGERGALFAPCTIGMFYLATGVTALSYMHEAFWSVFVVLGGLALALSAVLGFAP