3300006623: Soil microbial communities from the Leymus chinensis steppe, China - after adding 5.25 g N m- 2, yr-1

Overview

Basic Information

• IMG/M Taxon OID: 3300006623
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117801 | Gp0125023 | Ga0101568
• Sample Name: Soil microbial communities from the Leymus chinensis steppe, China - after adding 5.25 g N m- 2, yr-1
• Sequencing Status: Permanent Draft
• Sequencing Center: Chengdu Institute of Biology, Chinese Academy of Sciences
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 201751538
• Sequencing Scaffolds: 27
• Novel Protein Genes: 27
• Associated Families: 26

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1
Not Available	8
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces flavidovirens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → unclassified Thauera → Thauera sp. 28	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces zinciresistens	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): grassland biome → land → fertilized soil
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline)

Location Information

• Location: the Inner Mongolia Grassland Ecosystem Research Station
• Coordinates
  • Lat. (^o): 43.63
  • Long. (^o): 116.7
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000555	Metagenome / Metatranscriptome	1028	Y
F000617	Metagenome	982	Y
F003760	Metagenome / Metatranscriptome	470	Y
F005606	Metagenome / Metatranscriptome	395	Y
F005766	Metagenome / Metatranscriptome	391	Y
F008025	Metagenome / Metatranscriptome	340	Y
F010101	Metagenome / Metatranscriptome	308	Y
F018165	Metagenome / Metatranscriptome	236	Y
F019867	Metagenome	227	Y
F024542	Metagenome	205	Y
F028661	Metagenome / Metatranscriptome	191	Y
F031859	Metagenome	181	Y
F035935	Metagenome / Metatranscriptome	171	N
F048553	Metagenome	148	Y
F048659	Metagenome	148	Y
F052266	Metagenome / Metatranscriptome	143	N
F058962	Metagenome / Metatranscriptome	134	N
F061029	Metagenome	132	Y
F061128	Metagenome / Metatranscriptome	132	N
F061194	Metagenome	132	Y
F070077	Metagenome / Metatranscriptome	123	Y
F072399	Metagenome / Metatranscriptome	121	Y
F073498	Metagenome	120	Y
F089128	Metagenome	109	Y
F097801	Metagenome / Metatranscriptome	104	Y
F102100	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0101568_10025508	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	534
Ga0101568_10076199	Not Available	738
Ga0101568_10091662	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	762
Ga0101568_10166277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces flavidovirens	567
Ga0101568_10193150	Not Available	533
Ga0101568_10285813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	508
Ga0101568_10303429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Zoogloeaceae → Thauera → unclassified Thauera → Thauera sp. 28	514
Ga0101568_10508632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces zinciresistens	750
Ga0101568_10674788	Not Available	595
Ga0101568_10782215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	780
Ga0101568_10819714	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	718
Ga0101568_11023864	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595
Ga0101568_11094179	All Organisms → cellular organisms → Bacteria	506
Ga0101568_11128978	Not Available	527
Ga0101568_11237397	Not Available	509
Ga0101568_11241861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546
Ga0101568_11257755	All Organisms → cellular organisms → Bacteria	852
Ga0101568_11258287	All Organisms → cellular organisms → Bacteria	589
Ga0101568_11262763	Not Available	589
Ga0101568_11315901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	524
Ga0101568_11339971	All Organisms → cellular organisms → Bacteria → Acidobacteria	574
Ga0101568_11394451	Not Available	522
Ga0101568_11450173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585
Ga0101568_11572496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	518
Ga0101568_11600295	Not Available	543
Ga0101568_11751110	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	587
Ga0101568_11807765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	554

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0101568_10025508	Ga0101568_100255081	F028661	MNLRRLTGLLGVLSYLTVPASLLAQVAGGVEIFGSLDNSAPITRTLGGLSLGVGTPYLGIRGSGGLGITSPIQAFGSQSGSDLVWAANADLILGPVNARMDEGFMPYAFGGLGLESSAEPTGFTDAIRTWSYGGG
Ga0101568_10076199	Ga0101568_100761991	F102100	MTLLGLAGVLAGFVLTALARARKLGDSWESAGLWAIFGGFG
Ga0101568_10091662	Ga0101568_100916622	F005766	GGYAFESFVSPNDFYDRQVHRVNARMVFDVTSSLQVTGGYIYREGDVISYAVPPRPDIARFSIERENQDEFGQPLRTAYKLLGRTHALSFSVAYQLMKYASVQLGYEYAVTTHDPLQYENHLVQANIAVAY*
Ga0101568_10166277	Ga0101568_101662771	F070077	IVPPALLLATLGSERIFGVYANGDHAVHLVSILRWVGREAMLLTYSSGWVIVPGALAGVALALFRPRGRAELAFAVTSVLLAGGLLLEAAQIADTDSQRFQERYLFTLVPLLAVAFCLYVQRGLPGRIPVGLLSAGLLLLAARVPLSGYATAHNKDDSPTLWAVLRLEGLTSVGNGSLAIALVAAVLS
Ga0101568_10193150	Ga0101568_101931501	F097801	IGRVAMNDPTLGRFVDSRNRRVNLIGAALWRGADSFLHSAQVRLNASIMDRSSK*
Ga0101568_10285813	Ga0101568_102858132	F018165	VSKDRSVEEMVNEVLMRQAKVRAERSGEPIEEALKAVLNTEAGTQLRELRDVPRRDEESVKEWQVGLARKRAQERAEDLGDH
Ga0101568_10303429	Ga0101568_103034291	F018165	VREDQSLAQMANEVLMRQAKVRADRSGEPIEEAMEAVVNTEAGKQLRELRDGPHSEESVEQAQVGVARDRAKERVEDLGKRLGEAPEFPTHG*
Ga0101568_10508632	Ga0101568_105086321	F031859	MSWHPDDPRSWGGWAPHDLRWGRHRPTWSWGHPARPLYDNQLGHRLPSGGPPAQGQLAMGVAIALFLLSPVTLFTWAIGQALLRVTGIRWWKLALASLAATALVVMAEGGPGPALAQHFSGYTGWLRQIGAAQLDYPAPGAFLWPQLPLAIPAGLLAAALNLAGRRQAIDPADVRRTQREATRRMESAVKRA
Ga0101568_10674788	Ga0101568_106747882	F061029	MGNTNCPVCKLPVGESKHFCHLCRAAGRDIQFDSGPCEAEHLTKTHTQDEIDRFDAAQTTSKP*
Ga0101568_10782215	Ga0101568_107822152	F008025	MASIGTKIKEAATKAAKDKVSRDKKGKNDERTGGSESGMDKAKRAVTSRLK*
Ga0101568_10819714	Ga0101568_108197142	F072399	MLTQEPTIPICPDCGTRLEGGFSRNLGRCMICLLRVGFDDVEEPNEAPLSS
Ga0101568_11023864	Ga0101568_110238642	F010101	RITHATVLTGTQGPAVVLYEAVNQTDKEYEQFTVTAFVFKADGTPRARQTAPGRRTLEAHEKKYSTIVLDGSAVEPTDVIVIGIDQAQLAGSEQWWHTDLRPLAEAAVPVKK*
Ga0101568_11094179	Ga0101568_110941792	F058962	IRGSAYSKGLSDDGDQFFVQASTDSSGAPSYQYGTTVRNFDGSTTDTIVGAADFGSINQLNRKIAVRVSTTKLNAILTAAGRPPIVSGSTLCGLRGRTFELDALALEDFTRGGTEFKVQ*
Ga0101568_11128978	Ga0101568_111289781	F019867	AQGIEVFGGYSANADYVQNRPAIPVVDQKVSPFFSHGSGPIGFEASFKRDVRNGLGIKVDVSGYSDTFPSGPAAYCQPDSSPAGIGCGTGLTFQAIGRAFYVTAGPEWKIRRGKRFAPFAEALVGIVSTRSTFMMSGSDVQYTNPFTGGVLLFTSGGFPPDRSIHYADAHADAGL
Ga0101568_11237397	Ga0101568_112373971	F048659	MTRAEMGAGLDLFPTWALGQKAAANRQVIAAMHQRLAAGQEVARMYQEPGLAWLERQAEVAEELVALRKRTTENRPGS*
Ga0101568_11241861	Ga0101568_112418612	F061194	NISELPFERRKAVLDEGLNTLLSVQLFEVSQHLDSAGKVDVFRFISDQKAGLESMLT*
Ga0101568_11257755	Ga0101568_112577551	F035935	VISAATFGAANDGATSTFIESYDDGTDVGLWHCSVNAPRLLEASGGNPGAYIQQGGFSTAVPTWASISTRFQPGVSDPYKIDSIYTGDWSSLGVTSITVDLNVIQVATWATDRAVTLELLQMDGTGFNVTYEATYTFPDLPEPPVGWQTYSFSVNANSPTIAEGWVFTRGDGTPETDAEWSLFLHRVDLTGIGFYKPGFAYPSLGTWILGIDNIEIDFQ
Ga0101568_11258287	Ga0101568_112582872	F048553	MMRFTIEERHLTDGDGRPIAPGAHDSVEFHTFDAATIDEAVGLYVKRDQAEIIGTVLKFPGFQAVATV
Ga0101568_11262763	Ga0101568_112627631	F061128	TSVVRWTVTGRTGGGQTFTLTRPNRFASQFDISFDSIFEMLDFLSVLQAQPFQEVHFSKVTITASADELYRRYRIDKVLHKTGPNRFVEVSSRRPIRVKAGAAVLVRVRLASYKQRGAPLNLDVAFRVPKGRAGSGGTLEVVGGASAFSEDIFCLFDPDACGEEGGVKSFTQVLQALGRQPRNNQLIATMTIDPAP
Ga0101568_11315901	Ga0101568_113159012	F024542	LDFSYGLYVDGGRVASFAEGRIGYREWARRSGRLADIHSVDDRYDHDIDEIMA*
Ga0101568_11339971	Ga0101568_113399712	F000555	AVQRDGQWIAHAEKNDSSFGTECSGAAEHEAVDRLTRWLEWQAEHTAALQALQTAENAYHRTIAGSAFASATEGPSPNELQKESLEALEAVRVRLDEVRARKPE*
Ga0101568_11394451	Ga0101568_113944512	F005606	QPPPPGRRKRELLGPTALIVMVVAILAFTAVAITIELASNRGKAFKATVTVVGPVTGSQNQVRLLFKVTNTGSRPGRPDKCEAVLYNFSGERVGVGAVSLKEPIPPGGTHDEEAIGTAAEPPINGSVTCRALEPG*
Ga0101568_11450173	Ga0101568_114501732	F089128	MTLVLNIVLGLIPTLILGASIAAGVEDDARHRRVFLLIYALWAFTLAGWNWIQGSHVAWIVIWAALGLAALVMWRYHRRS*
Ga0101568_11572496	Ga0101568_115724961	F000617	MMPVMVKEADVNRIDVLEDYEVLDATALGRRLGFKRNTVLAYLSRRNFGRIPRPNRQLAMVPIWYEKSVKEWEAKEYRARGK*
Ga0101568_11600295	Ga0101568_116002951	F052266	PGSTTHWQLFRYLGTQLSDCGGGGVSTLLVDYVTPPASGWPSNSGTSPTPSDWDGNLWPTAASCPAGSLPVVALSMTINVDPDTHSERAYNLSDSIALRNASRCT*
Ga0101568_11751110	Ga0101568_117511102	F003760	MKPKQIFNSILAVLFLFPLMGAFAQQAANSGSIEVITT
Ga0101568_11807765	Ga0101568_118077651	F073498	TTLFLWNAGFGFGVIALASLFSLGPISLAYFAPWTWLIRFGIALGTNSFALFVPGARIPPLDLRSIISHAGIPELVAYIILATVLANASLWRQRRITDRHVVRIRQLRDVRLTSLELSLVVIAFGS*