Metagenome / Metatranscriptome Family F102100

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F102100
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	57 residues
Representative Sequence	MTLLGLAGVLAGFVLTALARAKKLGDRWESAGLWAIFGGFGLIMVGVVLAIATAE
Number of Associated Samples	67
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.43 %
% of genes near scaffold ends (potentially truncated)	22.55 %
% of genes from short scaffolds (< 2000 bps)	79.41 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (55.882 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (26.471 % of family members)
Environment Ontology (ENVO)	Unclassified (34.314 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (41.176 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.63% β-sheet: 0.00% Coil/Unstructured: 43.37%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00877	NLPC_P60	9.80
PF13783	DUF4177	5.88
PF06983	3-dmu-9_3-mt	2.94
PF00392	GntR	2.94
PF13468	Glyoxalase_3	1.96
PF00144	Beta-lactamase	0.98
PF04237	YjbR	0.98
PF00875	DNA_photolyase	0.98
PF12587	DUF3761	0.98
PF10282	Lactonase	0.98
PF13683	rve_3	0.98
PF13649	Methyltransf_25	0.98
PF01872	RibD_C	0.98
PF07883	Cupin_2	0.98
PF13676	TIR_2	0.98
PF12697	Abhydrolase_6	0.98
PF13539	Peptidase_M15_4	0.98
PF08734	GYD	0.98
PF02781	G6PD_C	0.98
PF02913	FAD-oxidase_C	0.98
PF00132	Hexapep	0.98
PF00563	EAL	0.98
PF06781	CrgA	0.98
PF00005	ABC_tran	0.98
PF00589	Phage_integrase	0.98
PF00872	Transposase_mut	0.98
PF03640	Lipoprotein_15	0.98
PF02826	2-Hacid_dh_C	0.98
PF01494	FAD_binding_3	0.98
PF07045	DUF1330	0.98
PF00535	Glycos_transf_2	0.98
PF13903	Claudin_2	0.98
PF04542	Sigma70_r2	0.98
PF07836	DmpG_comm	0.98
PF12680	SnoaL_2	0.98
PF00196	GerE	0.98
PF00106	adh_short	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	9.80
COG3865	Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferase	General function prediction only [R]	2.94
COG2764	Zn-dependent glyoxalase, PhnB family	Energy production and conversion [C]	2.94
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.96
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.98
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.98
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.98
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.98
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.98
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.98
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.98
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.98
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.98
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.98
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.98
COG0119	Isopropylmalate/homocitrate/citramalate synthases	Amino acid transport and metabolism [E]	0.98
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.98
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.98
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.98
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.98
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98
COG0415	Deoxyribodipyrimidine photolyase	Replication, recombination and repair [L]	0.98
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.98
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.98
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
All Organisms	root	All Organisms	44.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
cellular organisms	root	All Organisms → cellular organisms	44.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	28.43 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.63 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	6.86 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.69 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	4.90 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.98 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.90 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.96 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.96 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	0.98 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.98 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.90 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.96 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1.96 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.98 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.98 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.90 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.96 %
Microtetraspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microtetraspora	0.98 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.98 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.98 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4.90 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.96 %
Microtetraspora niveoalba	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microtetraspora → Microtetraspora niveoalba	0.98 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.98 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.98 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000443\|F12B_11644527	Not Available	652	Open in IMG/M
3300000550\|F24TB_10365047	Not Available	565	Open in IMG/M
3300000559\|F14TC_100976778	Not Available	1326	Open in IMG/M
3300000956\|JGI10216J12902_110846607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1799	Open in IMG/M
3300000956\|JGI10216J12902_111374249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	579	Open in IMG/M
3300000956\|JGI10216J12902_115211021	Not Available	685	Open in IMG/M
3300001431\|F14TB_100675565	Not Available	581	Open in IMG/M
3300001431\|F14TB_100854863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2019	Open in IMG/M
3300003373\|JGI25407J50210_10008585	All Organisms → cellular organisms → Bacteria	2578	Open in IMG/M
3300003373\|JGI25407J50210_10028330	Not Available	1453	Open in IMG/M
3300003373\|JGI25407J50210_10057381	Not Available	980	Open in IMG/M
3300003373\|JGI25407J50210_10059276	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300005347\|Ga0070668_100096852	All Organisms → cellular organisms → Bacteria	2332	Open in IMG/M
3300005444\|Ga0070694_100619829	Not Available	873	Open in IMG/M
3300005562\|Ga0058697_10164416	Not Available	979	Open in IMG/M
3300005562\|Ga0058697_10175190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	954	Open in IMG/M
3300005562\|Ga0058697_10320974	Not Available	745	Open in IMG/M
3300005562\|Ga0058697_10476972	Not Available	633	Open in IMG/M
3300005937\|Ga0081455_10037432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4309	Open in IMG/M
3300005981\|Ga0081538_10001265	All Organisms → cellular organisms → Bacteria	26369	Open in IMG/M
3300005981\|Ga0081538_10003977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13766	Open in IMG/M
3300005981\|Ga0081538_10018780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5173	Open in IMG/M
3300005981\|Ga0081538_10078696	All Organisms → cellular organisms → Bacteria	1768	Open in IMG/M
3300005983\|Ga0081540_1041593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2381	Open in IMG/M
3300005985\|Ga0081539_10088132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1611	Open in IMG/M
3300006049\|Ga0075417_10001943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5992	Open in IMG/M
3300006049\|Ga0075417_10183725	Not Available	984	Open in IMG/M
3300006576\|Ga0074047_11618443	Not Available	684	Open in IMG/M
3300006577\|Ga0074050_11279417	Not Available	812	Open in IMG/M
3300006623\|Ga0101568_10076199	Not Available	738	Open in IMG/M
3300006844\|Ga0075428_100061584	Not Available	4110	Open in IMG/M
3300006844\|Ga0075428_101015115	Not Available	878	Open in IMG/M
3300006844\|Ga0075428_101840323	Not Available	630	Open in IMG/M
3300006844\|Ga0075428_102058283	Not Available	591	Open in IMG/M
3300006845\|Ga0075421_100138303	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3048	Open in IMG/M
3300006845\|Ga0075421_101020932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	935	Open in IMG/M
3300006845\|Ga0075421_102052545	Not Available	608	Open in IMG/M
3300006847\|Ga0075431_100331452	Not Available	1533	Open in IMG/M
3300006847\|Ga0075431_101617814	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300006871\|Ga0075434_100139845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2440	Open in IMG/M
3300006969\|Ga0075419_10000169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37636	Open in IMG/M
3300009094\|Ga0111539_10826862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1078	Open in IMG/M
3300009094\|Ga0111539_11412291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	807	Open in IMG/M
3300009094\|Ga0111539_13144346	Not Available	533	Open in IMG/M
3300009100\|Ga0075418_11496812	Not Available	733	Open in IMG/M
3300009147\|Ga0114129_10597888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Microtetraspora → Microtetraspora niveoalba	1430	Open in IMG/M
3300009147\|Ga0114129_11268657	Not Available	914	Open in IMG/M
3300009156\|Ga0111538_12357019	All Organisms → cellular organisms → Bacteria → Terrabacteria group	668	Open in IMG/M
3300009162\|Ga0075423_10042150	All Organisms → cellular organisms → Bacteria	4675	Open in IMG/M
3300009840\|Ga0126313_10168771	Not Available	1664	Open in IMG/M
3300009840\|Ga0126313_10228425	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300010038\|Ga0126315_10071582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1932	Open in IMG/M
3300010038\|Ga0126315_10121092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1524	Open in IMG/M
3300010038\|Ga0126315_10349401	Not Available	921	Open in IMG/M
3300010044\|Ga0126310_10618278	Not Available	810	Open in IMG/M
3300010145\|Ga0126321_1055272	All Organisms → cellular organisms → Bacteria → Terrabacteria group	713	Open in IMG/M
3300010337\|Ga0134062_10749399	Not Available	518	Open in IMG/M
3300010999\|Ga0138505_100003853	Not Available	1471	Open in IMG/M
3300012021\|Ga0120192_10040493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	803	Open in IMG/M
3300012021\|Ga0120192_10076631	Not Available	642	Open in IMG/M
3300014487\|Ga0182000_10127589	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300014487\|Ga0182000_10159078	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	826	Open in IMG/M
3300014487\|Ga0182000_10550164	Not Available	547	Open in IMG/M
3300014488\|Ga0182001_10179287	Not Available	754	Open in IMG/M
3300018027\|Ga0184605_10117078	Not Available	1185	Open in IMG/M
3300018067\|Ga0184611_1007223	Not Available	3006	Open in IMG/M
3300018466\|Ga0190268_10964573	Not Available	674	Open in IMG/M
3300026118\|Ga0207675_100002230	All Organisms → cellular organisms → Bacteria	19264	Open in IMG/M
3300027718\|Ga0209795_10054326	Not Available	1208	Open in IMG/M
3300027750\|Ga0209461_10063493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	776	Open in IMG/M
3300027873\|Ga0209814_10000080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24475	Open in IMG/M
3300027873\|Ga0209814_10152560	Not Available	991	Open in IMG/M
3300027873\|Ga0209814_10207263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	847	Open in IMG/M
3300027909\|Ga0209382_10374690	Not Available	1590	Open in IMG/M
3300027909\|Ga0209382_11674407	Not Available	625	Open in IMG/M
3300027909\|Ga0209382_12145717	Not Available	530	Open in IMG/M
3300028587\|Ga0247828_10008276	All Organisms → cellular organisms → Bacteria	3748	Open in IMG/M
3300028592\|Ga0247822_10265201	Not Available	1303	Open in IMG/M
3300028704\|Ga0307321_1050226	Not Available	790	Open in IMG/M
3300028705\|Ga0307276_10039396	Not Available	1013	Open in IMG/M
3300028711\|Ga0307293_10015099	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2212	Open in IMG/M
3300028719\|Ga0307301_10016727	Not Available	2116	Open in IMG/M
3300028771\|Ga0307320_10481616	Not Available	501	Open in IMG/M
3300028778\|Ga0307288_10064076	Not Available	1288	Open in IMG/M
3300028778\|Ga0307288_10291869	Not Available	647	Open in IMG/M
3300028878\|Ga0307278_10168325	Not Available	980	Open in IMG/M
3300028881\|Ga0307277_10311055	Not Available	699	Open in IMG/M
3300030496\|Ga0268240_10057212	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300030510\|Ga0268243_1064087	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300030510\|Ga0268243_1135356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	590	Open in IMG/M
3300031094\|Ga0308199_1095940	Not Available	647	Open in IMG/M
3300031114\|Ga0308187_10082800	Not Available	961	Open in IMG/M
3300031548\|Ga0307408_100137176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1915	Open in IMG/M
3300031901\|Ga0307406_11927829	Not Available	527	Open in IMG/M
3300032002\|Ga0307416_100206339	All Organisms → cellular organisms → Bacteria	1870	Open in IMG/M
3300032002\|Ga0307416_100577724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1201	Open in IMG/M
3300032004\|Ga0307414_11633360	Not Available	601	Open in IMG/M
3300032005\|Ga0307411_11828503	Not Available	564	Open in IMG/M
3300032126\|Ga0307415_100455771	Not Available	1107	Open in IMG/M
3300032159\|Ga0268251_10068724	Not Available	1202	Open in IMG/M
3300032180\|Ga0307471_101378044	Not Available	866	Open in IMG/M
3300034172\|Ga0334913_011253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2124	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	52.94%
Environmental	Environmental	47.06%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.94%
Terrestrial	Environmental → Terrestrial	44.12%
Aquatic	Environmental → Aquatic	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.31%
Roots	Host-Associated → Plants → Roots	7.84%
Phylloplane	Host-Associated → Plants → Phylloplane	5.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Sediment	Environmental → Aquatic → Sediment	1.96%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.98%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	33.33%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	7.84%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	33.33%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.39%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	5.88%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	26.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	7.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.88%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	5.88%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.96%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006623	Soil microbial communities from the Leymus chinensis steppe, China - after adding 5.25 g N m- 2, yr-1	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F12B_116445272	3300000443	Soil	VISSVLIQLGLVALVAGVVVTALVRAKKLGDRWDDWELWAIFGGFGLVMVGVVLGIATAG
F24TB_103650472	3300000550	Soil	MIPSLILLGLAGVFAGFVLTVLARTKKLGDSWEDKGLWAIFGGFGLVMAGVALSIPTAP*
F14TC_1009767782	3300000559	Soil	VIPSLLILLGLAGVLAGFXXXXVARAKKLGDSWEDRGLWAIFGGFGLVMVGVVLAIATAE
JGI10216J12902_1108466072	3300000956	Soil	MIPSLILLGLAGVFAGFVLTVLARTKKLGDSWEDKGLWAIFGGFGLVMAGVALAVATAE*
JGI10216J12902_1113742492	3300000956	Soil	VIQFFTLLGLGGVLAGFVLTALARAKRLSDSWESAGLWAIFGGFGLVMIAAALAIATAG*
JGI10216J12902_1152110212	3300000956	Soil	VISSVLIQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG
F14TB_1006755652	3300001431	Soil	MIPSLILLGLAGVFAGFVLTVLARTKKLGDSWEDKGLWAIFGGFGLVMVGVLLSISSAP*
F14TB_1008548632	3300001431	Soil	VISSALIQLGLVALVAGVVVTALVRVKKLGDRWDDWGLWAIFGGFGLVMVGVVLAIAAG*
JGI25407J50210_100085852	3300003373	Tabebuia Heterophylla Rhizosphere	VTALVILLGLASVLAGFVLTALARAKKVGGSWEDRGLWAIFGGFGLIMLGVGLGVATAE*
JGI25407J50210_100283302	3300003373	Tabebuia Heterophylla Rhizosphere	VTLSLILLGLASVFAGFVLTVLARARKLGDSWEDRGLWAIFAGFALIMAGVALAVPIAE*
JGI25407J50210_100573811	3300003373	Tabebuia Heterophylla Rhizosphere	MVPLTTLVGLAAIFAGFVVTAMVRARKLGDAWEPRGLGMIFGGFGLIMAGVILAIATV*
JGI25407J50210_100592761	3300003373	Tabebuia Heterophylla Rhizosphere	VVPSLVLLGLAGIFAGFLLTALTRARRLSHSWENRGLWAIFGGFGLIMLAVVLAVATAG*
Ga0070668_1000968521	3300005347	Switchgrass Rhizosphere	VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAPP*
Ga0070694_1006198293	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	HQKAKEGVRRVISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAPP*
Ga0058697_101644162	3300005562	Agave	VTPFLTLLGLAGVLAGFVLTAIARARKLGDNWESAGLWAIFGGFGLIMASVLLAIATAD*
Ga0058697_101751902	3300005562	Agave	VIQFFTLLGLAGVLGGFVLSAIARAKHLGDTWESTGLWTIFGGFGLIMLAAVLAIGTAG*
Ga0058697_103209741	3300005562	Agave	GLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA*
Ga0058697_104769721	3300005562	Agave	VTPFLTLLRLAGVLAGVVLTAIARARKLGESWESAGLWAIFGGFGLIMASVVLAIATAD*
Ga0081455_100374324	3300005937	Tabebuia Heterophylla Rhizosphere	VSSFLIQLGLAGLFAGCVLTAVARAKRLADRWETAGLWAIFGGFGLIMIGVALTVATF*
Ga0081538_1000126510	3300005981	Tabebuia Heterophylla Rhizosphere	VILSLILLGLASVFAGFVLTVLARARKLGDSWEDRGLWAIFAGFALIMAGVALAVPIAE*
Ga0081538_1000397713	3300005981	Tabebuia Heterophylla Rhizosphere	VTVLVILLGLASVLAGFVLTALARAKKVGGSWEDRGLWAIFGGFGLIMLGVGLGVATAE*
Ga0081538_100187809	3300005981	Tabebuia Heterophylla Rhizosphere	ILLGLASVLAGFVLTALARAKKVGGSWEDRGLWAIFGGFGLIMLGVGLGVATAE*
Ga0081538_100786961	3300005981	Tabebuia Heterophylla Rhizosphere	MIPFLTFLGLAAVLGGFLVMAIAKAKRLGERWEFTGLWTIFGGFGLIMLSAVLAMATAA*
Ga0081540_10415934	3300005983	Tabebuia Heterophylla Rhizosphere	VTQLGLVGVLAGFVLTALARAKKVSHSWEDRGLWAIFGGFGLIMVGAVLAIASLQ*
Ga0081539_100881322	3300005985	Tabebuia Heterophylla Rhizosphere	VIQSVMALLGLASIFAGVVLTALVRARKLGDDWEPRGLWAIFGGFGLIMAGLLLSIPTTP
Ga0075417_100019436	3300006049	Populus Rhizosphere	VIGFLTLLGLAGVLAGFVLTALARARKVGDRWESTGLWAIFGGFGLIMVAAALSIAAAA*
Ga0075417_101837251	3300006049	Populus Rhizosphere	LFLMQLGLAGLVGGCVLTAVARVKKLEDRWETAGLWAIFGGFGLIMVGVAMAVASF*
Ga0074047_116184432	3300006576	Soil	VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMVGVALSISTAPP*
Ga0074050_112794171	3300006577	Soil	VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMVGVALSISTAPPMSSARRRA
Ga0101568_100761991	3300006623	Soil	MTLLGLAGVLAGFVLTALARARKLGDSWESAGLWAIFGGFG
Ga0075428_10006158410	3300006844	Populus Rhizosphere	VISSVLIQLGLAALVAGVVVTALVRAKKLGDRWDDCGLWAIFGGFGLVMVGVVLAVATAG
Ga0075428_1010151152	3300006844	Populus Rhizosphere	MSSLLIQLGLAGVLAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVALAITTTG*
Ga0075428_1018403231	3300006844	Populus Rhizosphere	GLAALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG*
Ga0075428_1020582832	3300006844	Populus Rhizosphere	MIQFFTLLGLGGVLAGFVLTALARARRLSDTWESAGLWAFFGGFGLVMVAP
Ga0075421_1001383031	3300006845	Populus Rhizosphere	VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAG
Ga0075421_1010209323	3300006845	Populus Rhizosphere	VISSLLVQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAR
Ga0075421_1020525451	3300006845	Populus Rhizosphere	GDRQVISSVLIQLGLAALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG*
Ga0075431_1003314523	3300006847	Populus Rhizosphere	VISALLIQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAIATTG
Ga0075431_1016178142	3300006847	Populus Rhizosphere	MIQFFTLLGLGGVLAGFVLTALARARRLSDTWESAGLWAFFGGFGLVMVAAALAIASAG*
Ga0075434_1001398454	3300006871	Populus Rhizosphere	LLIQLGLAGVLAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVALAITTTG*
Ga0075419_100001695	3300006969	Populus Rhizosphere	VIGFLTLLGLAGVLAGFVLTALARARKVGDRWESAGLWAIFGGFGLIMVAAALSIAAAA*
Ga0111539_108268623	3300009094	Populus Rhizosphere	MQLGLAGLVGGCVLTAVARVKKLEDRWETAGLWAIFGGFGLIMVGVAMAVASF*
Ga0111539_114122911	3300009094	Populus Rhizosphere	GLAGVLAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVALAITTTG*
Ga0111539_131443461	3300009094	Populus Rhizosphere	VISSALIQLGLVALVAGIVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLGIATAG
Ga0075418_114968121	3300009100	Populus Rhizosphere	VSSFLIQLGLGGLFAGCVLTAVARAKKLADRWETAGLWAIFGGFGLIMVGVALTVATF*
Ga0114129_105978883	3300009147	Populus Rhizosphere	LVALVAGIVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLGIATAG*
Ga0114129_112686571	3300009147	Populus Rhizosphere	LILLGLAGVFAGFLLTVLARAKKLGESWEDKGLWAIFGGFGLVMAAVALAVATAE*
Ga0111538_123570192	3300009156	Populus Rhizosphere	GGLFAGCVLTAVARAKKLADRWETAGLWAIFGGFGLIMVGVALTVATF*
Ga0075423_100421508	3300009162	Populus Rhizosphere	VISSALIQLGLVALVAGIVVTALVRAKKLGDRWDDCGLWAIFGGFGLVMVGVVLAVATAG
Ga0126313_101687712	3300009840	Serpentine Soil	MTLLGLAGVLAGFVLTAIARAKKLGDSWESAGLWAIFGGFGLIMVGVVLAIATAE*
Ga0126313_102284252	3300009840	Serpentine Soil	LILLGLAGVVAGFMLTVLARAKKLGDSWEDRGLWAIFGGFGLIMAAVALAVATAE*
Ga0126315_100715824	3300010038	Serpentine Soil	VIPFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA*
Ga0126315_101210922	3300010038	Serpentine Soil	VIPFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTVFGGFGLIMLSAVLAMATTA*
Ga0126315_103494011	3300010038	Serpentine Soil	MTLLGLAGVLAGFVLTALARAKKLGDRWESAGLWAIFGGFGLIMVGVVLAIATAE*
Ga0126310_106182781	3300010044	Serpentine Soil	MTLLGLAGVLAGFVLTALARAKKLGDSWEDRGLWAIFGGFGLVMVGVVLAIATAE*
Ga0126321_10552722	3300010145	Soil	VIPFLTFLGLAAVLGGFVLMAIAKAKRLGDRWELSGLWTVFGGFGLIMLAAVLAMATTA*
Ga0134062_107493992	3300010337	Grasslands Soil	LLIQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG*
Ga0138505_1000038533	3300010999	Soil	MTLLGLAGVLAGFVLTAIARAKKLGDSWESAGLWAIFGGFGLVMVGVVLAIASAE*
Ga0120192_100404932	3300012021	Terrestrial	VTLLVTFLGLAGVLAGFLLTALARARKLGAGWEDRGLWAIFGGFGLIMAGAALAIATAE*
Ga0120192_100766311	3300012021	Terrestrial	VLAGFVLTALARGKKLGDSREDRGLWAIFGGFGLIMAGVGLAAATTE*
Ga0182000_101275893	3300014487	Soil	MISSLLIQLGLAGVLAGIVVTALVRAKKLGDSWDAWGLWAIFGGFGLVMVGVFLAIGTAG
Ga0182000_101590782	3300014487	Soil	LTQLGLVGVLAGFVLTALARAKKVGASWEERGLFAIFAGFGLIMVGLVLAVAIAE*
Ga0182000_105501642	3300014487	Soil	VISFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA*
Ga0182001_101792872	3300014488	Soil	LLTQLGLVGVLAGFVLTALARAKKVGASWEERGLFAIFAGFGLIMVGLVLAVAIAE*
Ga0184605_101170783	3300018027	Groundwater Sediment	VIEFLILLGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE
Ga0184611_10072234	3300018067	Groundwater Sediment	LASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAPP
Ga0190268_109645732	3300018466	Soil	MTLLGLAGVLAGFVLTALARAKKLGDRWESAGLWAIFGGFGLIMVGVVLAIATAE
Ga0207675_10000223017	3300026118	Switchgrass Rhizosphere	VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAP
Ga0209795_100543263	3300027718	Agave	VIPFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFAGFGLIMLSAVLAMATTA
Ga0209461_100634932	3300027750	Agave	VIQFFTLLGLAGVLGGFVLSAIARAKHLGDTWESTGLWTIFGGFGLIMLAAVLAIGTAG
Ga0209814_100000805	3300027873	Populus Rhizosphere	VIGFLTLLGLAGVLAGFVLTALARARKVGDRWESTGLWAIFGGFGLIMVAAALSIAAAA
Ga0209814_101525601	3300027873	Populus Rhizosphere	LFLMQLGLAGLVGGCVLTAVARVKKLEDRWETAGLWAIFGGFGLIMVGVAMAVASF
Ga0209814_102072632	3300027873	Populus Rhizosphere	MIQFFTLLGLGGVLAGFVLTALARARRLSDTWESAGLWAFFGGFGLVMVAAALAIASAG
Ga0209382_103746904	3300027909	Populus Rhizosphere	VISSVLIQLGLAALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG
Ga0209382_116744071	3300027909	Populus Rhizosphere	VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGV
Ga0209382_121457172	3300027909	Populus Rhizosphere	VISSVLIQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWGIFGGFGLVMVGVVLAVATAG
Ga0247828_100082764	3300028587	Soil	VISSFLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMVGVALSISTAP
Ga0247822_102652011	3300028592	Soil	VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMVGVALSISTAP
Ga0307321_10502261	3300028704	Soil	EFLILLGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE
Ga0307276_100393961	3300028705	Soil	VIEFLILLGLAGVLAGFVVTALVRAKKLGYRWESMGLWAIFGGFGLVMVAVALAIGTVE
Ga0307293_100150992	3300028711	Soil	MQLGLAGLVGGCVLTAVARVKKLEDRWETAGLWAILGGFGLIMVGVAMAVATF
Ga0307301_100167272	3300028719	Soil	VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAP
Ga0307320_104816162	3300028771	Soil	MAPSLLTLLGLASIFAGVVVTAFVRARKLGEDWEPRGLWAIFGGFGLFMVGVLLSIPTAP
Ga0307288_100640762	3300028778	Soil	VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFVS
Ga0307288_102918693	3300028778	Soil	LLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAPP
Ga0307278_101683251	3300028878	Soil	SQEGDRRVIEFLILLGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE
Ga0307277_103110552	3300028881	Soil	MAPSLLTLLGLASIFAGVVVTAFVRARKLGEDWEPRGLWAIFGGF
Ga0268240_100572122	3300030496	Soil	LLTQLGLVGVLAGFVLTALARAKKVGASWEERGLFAIFAGFGLIMVGLVLAVAIAE
Ga0268243_10640871	3300030510	Soil	MISSLLIQLGLAGVLAGIVVTALVRAKKLGDSWDAWGLWAIFGGFGLVMVGVFLAIG
Ga0268243_11353562	3300030510	Soil	VIQFFTLLGLAGVLGGFVLSAIARAKHLGDTWESTGLWTIFGGFGLIM
Ga0308199_10959402	3300031094	Soil	RHSQEGDRRVIEFLILLGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE
Ga0308187_100828001	3300031114	Soil	LGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE
Ga0307408_1001371762	3300031548	Rhizosphere	VIQSLMALVGLASIFAGVVLTALVRARKLGDDWEPRGLWAIFGGFGLIMTGLLLSIPTTP
Ga0307406_119278291	3300031901	Rhizosphere	IQLGLAGVLAGIVVTALVRAKKLGDSWDAWGLWAIFGGFGLVMVGVFLAIGTAG
Ga0307416_1002063392	3300032002	Rhizosphere	LTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA
Ga0307416_1005777242	3300032002	Rhizosphere	LILLGLAGVFAGFVLTVLARTKKLGDSWEDRGLWAIFGGFGLIMAAVALAVATAE
Ga0307414_116333602	3300032004	Rhizosphere	VIPFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA
Ga0307411_118285032	3300032005	Rhizosphere	VIPSLLILLGLAGVLAGFVLTALARAKKLGDSWEDRGLWAIFGGFGLVMVGVVLTIATAE
Ga0307415_1004557711	3300032126	Rhizosphere	VIPSLILLGLAGVFAGFVLTVLARTKKLGDSWEDRGLWAIFGGFGLIMAAVALVVATAE
Ga0268251_100687242	3300032159	Agave	VTPFLTLLGLAGVLAGFVLTAIARARKLGDNWESAGLWAIFGGFGLIMASVLLAIATAD
Ga0307471_1013780441	3300032180	Hardwood Forest Soil	VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLFMAGVLL
Ga0334913_011253_1187_1366	3300034172	Sub-Biocrust Soil	VVPFLTLLGLAGVLAGFVLTAIARARKLGDNWESAGLWAIFGGFGLIMASVVLAIATAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F102100

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences