Basic Information | |
---|---|
Family ID | F102100 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 57 residues |
Representative Sequence | MTLLGLAGVLAGFVLTALARAKKLGDRWESAGLWAIFGGFGLIMVGVVLAIATAE |
Number of Associated Samples | 67 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 78.43 % |
% of genes near scaffold ends (potentially truncated) | 22.55 % |
% of genes from short scaffolds (< 2000 bps) | 79.41 % |
Associated GOLD sequencing projects | 62 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.42 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (55.882 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (26.471 % of family members) |
Environment Ontology (ENVO) | Unclassified (34.314 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (41.176 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 56.63% β-sheet: 0.00% Coil/Unstructured: 43.37% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.42 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Soil Groundwater Sediment Soil Soil Serpentine Soil Grasslands Soil Terrestrial Soil Sub-Biocrust Soil Hardwood Forest Soil Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Tabebuia Heterophylla Rhizosphere Switchgrass Rhizosphere Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Agave Agave |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
F12B_116445272 | 3300000443 | Soil | VISSVLIQLGLVALVAGVVVTALVRAKKLGDRWDDWELWAIFGGFGLVMVGVVLGIATAG |
F24TB_103650472 | 3300000550 | Soil | MIPSLILLGLAGVFAGFVLTVLARTKKLGDSWEDKGLWAIFGGFGLVMAGVALSIPTAP* |
F14TC_1009767782 | 3300000559 | Soil | VIPSLLILLGLAGVLAGFXXXXVARAKKLGDSWEDRGLWAIFGGFGLVMVGVVLAIATAE |
JGI10216J12902_1108466072 | 3300000956 | Soil | MIPSLILLGLAGVFAGFVLTVLARTKKLGDSWEDKGLWAIFGGFGLVMAGVALAVATAE* |
JGI10216J12902_1113742492 | 3300000956 | Soil | VIQFFTLLGLGGVLAGFVLTALARAKRLSDSWESAGLWAIFGGFGLVMIAAALAIATAG* |
JGI10216J12902_1152110212 | 3300000956 | Soil | VISSVLIQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG |
F14TB_1006755652 | 3300001431 | Soil | MIPSLILLGLAGVFAGFVLTVLARTKKLGDSWEDKGLWAIFGGFGLVMVGVLLSISSAP* |
F14TB_1008548632 | 3300001431 | Soil | VISSALIQLGLVALVAGVVVTALVRVKKLGDRWDDWGLWAIFGGFGLVMVGVVLAIAAG* |
JGI25407J50210_100085852 | 3300003373 | Tabebuia Heterophylla Rhizosphere | VTALVILLGLASVLAGFVLTALARAKKVGGSWEDRGLWAIFGGFGLIMLGVGLGVATAE* |
JGI25407J50210_100283302 | 3300003373 | Tabebuia Heterophylla Rhizosphere | VTLSLILLGLASVFAGFVLTVLARARKLGDSWEDRGLWAIFAGFALIMAGVALAVPIAE* |
JGI25407J50210_100573811 | 3300003373 | Tabebuia Heterophylla Rhizosphere | MVPLTTLVGLAAIFAGFVVTAMVRARKLGDAWEPRGLGMIFGGFGLIMAGVILAIATV* |
JGI25407J50210_100592761 | 3300003373 | Tabebuia Heterophylla Rhizosphere | VVPSLVLLGLAGIFAGFLLTALTRARRLSHSWENRGLWAIFGGFGLIMLAVVLAVATAG* |
Ga0070668_1000968521 | 3300005347 | Switchgrass Rhizosphere | VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAPP* |
Ga0070694_1006198293 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | HQKAKEGVRRVISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAPP* |
Ga0058697_101644162 | 3300005562 | Agave | VTPFLTLLGLAGVLAGFVLTAIARARKLGDNWESAGLWAIFGGFGLIMASVLLAIATAD* |
Ga0058697_101751902 | 3300005562 | Agave | VIQFFTLLGLAGVLGGFVLSAIARAKHLGDTWESTGLWTIFGGFGLIMLAAVLAIGTAG* |
Ga0058697_103209741 | 3300005562 | Agave | GLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA* |
Ga0058697_104769721 | 3300005562 | Agave | VTPFLTLLRLAGVLAGVVLTAIARARKLGESWESAGLWAIFGGFGLIMASVVLAIATAD* |
Ga0081455_100374324 | 3300005937 | Tabebuia Heterophylla Rhizosphere | VSSFLIQLGLAGLFAGCVLTAVARAKRLADRWETAGLWAIFGGFGLIMIGVALTVATF* |
Ga0081538_1000126510 | 3300005981 | Tabebuia Heterophylla Rhizosphere | VILSLILLGLASVFAGFVLTVLARARKLGDSWEDRGLWAIFAGFALIMAGVALAVPIAE* |
Ga0081538_1000397713 | 3300005981 | Tabebuia Heterophylla Rhizosphere | VTVLVILLGLASVLAGFVLTALARAKKVGGSWEDRGLWAIFGGFGLIMLGVGLGVATAE* |
Ga0081538_100187809 | 3300005981 | Tabebuia Heterophylla Rhizosphere | ILLGLASVLAGFVLTALARAKKVGGSWEDRGLWAIFGGFGLIMLGVGLGVATAE* |
Ga0081538_100786961 | 3300005981 | Tabebuia Heterophylla Rhizosphere | MIPFLTFLGLAAVLGGFLVMAIAKAKRLGERWEFTGLWTIFGGFGLIMLSAVLAMATAA* |
Ga0081540_10415934 | 3300005983 | Tabebuia Heterophylla Rhizosphere | VTQLGLVGVLAGFVLTALARAKKVSHSWEDRGLWAIFGGFGLIMVGAVLAIASLQ* |
Ga0081539_100881322 | 3300005985 | Tabebuia Heterophylla Rhizosphere | VIQSVMALLGLASIFAGVVLTALVRARKLGDDWEPRGLWAIFGGFGLIMAGLLLSIPTTP |
Ga0075417_100019436 | 3300006049 | Populus Rhizosphere | VIGFLTLLGLAGVLAGFVLTALARARKVGDRWESTGLWAIFGGFGLIMVAAALSIAAAA* |
Ga0075417_101837251 | 3300006049 | Populus Rhizosphere | LFLMQLGLAGLVGGCVLTAVARVKKLEDRWETAGLWAIFGGFGLIMVGVAMAVASF* |
Ga0074047_116184432 | 3300006576 | Soil | VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMVGVALSISTAPP* |
Ga0074050_112794171 | 3300006577 | Soil | VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMVGVALSISTAPPMSSARRRA |
Ga0101568_100761991 | 3300006623 | Soil | MTLLGLAGVLAGFVLTALARARKLGDSWESAGLWAIFGGFG |
Ga0075428_10006158410 | 3300006844 | Populus Rhizosphere | VISSVLIQLGLAALVAGVVVTALVRAKKLGDRWDDCGLWAIFGGFGLVMVGVVLAVATAG |
Ga0075428_1010151152 | 3300006844 | Populus Rhizosphere | MSSLLIQLGLAGVLAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVALAITTTG* |
Ga0075428_1018403231 | 3300006844 | Populus Rhizosphere | GLAALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG* |
Ga0075428_1020582832 | 3300006844 | Populus Rhizosphere | MIQFFTLLGLGGVLAGFVLTALARARRLSDTWESAGLWAFFGGFGLVMVAP |
Ga0075421_1001383031 | 3300006845 | Populus Rhizosphere | VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAG |
Ga0075421_1010209323 | 3300006845 | Populus Rhizosphere | VISSLLVQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAR |
Ga0075421_1020525451 | 3300006845 | Populus Rhizosphere | GDRQVISSVLIQLGLAALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG* |
Ga0075431_1003314523 | 3300006847 | Populus Rhizosphere | VISALLIQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAIATTG |
Ga0075431_1016178142 | 3300006847 | Populus Rhizosphere | MIQFFTLLGLGGVLAGFVLTALARARRLSDTWESAGLWAFFGGFGLVMVAAALAIASAG* |
Ga0075434_1001398454 | 3300006871 | Populus Rhizosphere | LLIQLGLAGVLAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVALAITTTG* |
Ga0075419_100001695 | 3300006969 | Populus Rhizosphere | VIGFLTLLGLAGVLAGFVLTALARARKVGDRWESAGLWAIFGGFGLIMVAAALSIAAAA* |
Ga0111539_108268623 | 3300009094 | Populus Rhizosphere | MQLGLAGLVGGCVLTAVARVKKLEDRWETAGLWAIFGGFGLIMVGVAMAVASF* |
Ga0111539_114122911 | 3300009094 | Populus Rhizosphere | GLAGVLAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVALAITTTG* |
Ga0111539_131443461 | 3300009094 | Populus Rhizosphere | VISSALIQLGLVALVAGIVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLGIATAG |
Ga0075418_114968121 | 3300009100 | Populus Rhizosphere | VSSFLIQLGLGGLFAGCVLTAVARAKKLADRWETAGLWAIFGGFGLIMVGVALTVATF* |
Ga0114129_105978883 | 3300009147 | Populus Rhizosphere | LVALVAGIVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLGIATAG* |
Ga0114129_112686571 | 3300009147 | Populus Rhizosphere | LILLGLAGVFAGFLLTVLARAKKLGESWEDKGLWAIFGGFGLVMAAVALAVATAE* |
Ga0111538_123570192 | 3300009156 | Populus Rhizosphere | GGLFAGCVLTAVARAKKLADRWETAGLWAIFGGFGLIMVGVALTVATF* |
Ga0075423_100421508 | 3300009162 | Populus Rhizosphere | VISSALIQLGLVALVAGIVVTALVRAKKLGDRWDDCGLWAIFGGFGLVMVGVVLAVATAG |
Ga0126313_101687712 | 3300009840 | Serpentine Soil | MTLLGLAGVLAGFVLTAIARAKKLGDSWESAGLWAIFGGFGLIMVGVVLAIATAE* |
Ga0126313_102284252 | 3300009840 | Serpentine Soil | LILLGLAGVVAGFMLTVLARAKKLGDSWEDRGLWAIFGGFGLIMAAVALAVATAE* |
Ga0126315_100715824 | 3300010038 | Serpentine Soil | VIPFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA* |
Ga0126315_101210922 | 3300010038 | Serpentine Soil | VIPFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTVFGGFGLIMLSAVLAMATTA* |
Ga0126315_103494011 | 3300010038 | Serpentine Soil | MTLLGLAGVLAGFVLTALARAKKLGDRWESAGLWAIFGGFGLIMVGVVLAIATAE* |
Ga0126310_106182781 | 3300010044 | Serpentine Soil | MTLLGLAGVLAGFVLTALARAKKLGDSWEDRGLWAIFGGFGLVMVGVVLAIATAE* |
Ga0126321_10552722 | 3300010145 | Soil | VIPFLTFLGLAAVLGGFVLMAIAKAKRLGDRWELSGLWTVFGGFGLIMLAAVLAMATTA* |
Ga0134062_107493992 | 3300010337 | Grasslands Soil | LLIQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG* |
Ga0138505_1000038533 | 3300010999 | Soil | MTLLGLAGVLAGFVLTAIARAKKLGDSWESAGLWAIFGGFGLVMVGVVLAIASAE* |
Ga0120192_100404932 | 3300012021 | Terrestrial | VTLLVTFLGLAGVLAGFLLTALARARKLGAGWEDRGLWAIFGGFGLIMAGAALAIATAE* |
Ga0120192_100766311 | 3300012021 | Terrestrial | VLAGFVLTALARGKKLGDSREDRGLWAIFGGFGLIMAGVGLAAATTE* |
Ga0182000_101275893 | 3300014487 | Soil | MISSLLIQLGLAGVLAGIVVTALVRAKKLGDSWDAWGLWAIFGGFGLVMVGVFLAIGTAG |
Ga0182000_101590782 | 3300014487 | Soil | LTQLGLVGVLAGFVLTALARAKKVGASWEERGLFAIFAGFGLIMVGLVLAVAIAE* |
Ga0182000_105501642 | 3300014487 | Soil | VISFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA* |
Ga0182001_101792872 | 3300014488 | Soil | LLTQLGLVGVLAGFVLTALARAKKVGASWEERGLFAIFAGFGLIMVGLVLAVAIAE* |
Ga0184605_101170783 | 3300018027 | Groundwater Sediment | VIEFLILLGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE |
Ga0184611_10072234 | 3300018067 | Groundwater Sediment | LASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAPP |
Ga0190268_109645732 | 3300018466 | Soil | MTLLGLAGVLAGFVLTALARAKKLGDRWESAGLWAIFGGFGLIMVGVVLAIATAE |
Ga0207675_10000223017 | 3300026118 | Switchgrass Rhizosphere | VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAP |
Ga0209795_100543263 | 3300027718 | Agave | VIPFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFAGFGLIMLSAVLAMATTA |
Ga0209461_100634932 | 3300027750 | Agave | VIQFFTLLGLAGVLGGFVLSAIARAKHLGDTWESTGLWTIFGGFGLIMLAAVLAIGTAG |
Ga0209814_100000805 | 3300027873 | Populus Rhizosphere | VIGFLTLLGLAGVLAGFVLTALARARKVGDRWESTGLWAIFGGFGLIMVAAALSIAAAA |
Ga0209814_101525601 | 3300027873 | Populus Rhizosphere | LFLMQLGLAGLVGGCVLTAVARVKKLEDRWETAGLWAIFGGFGLIMVGVAMAVASF |
Ga0209814_102072632 | 3300027873 | Populus Rhizosphere | MIQFFTLLGLGGVLAGFVLTALARARRLSDTWESAGLWAFFGGFGLVMVAAALAIASAG |
Ga0209382_103746904 | 3300027909 | Populus Rhizosphere | VISSVLIQLGLAALVAGVVVTALVRAKKLGDRWDDWGLWAIFGGFGLVMVGVVLAVATAG |
Ga0209382_116744071 | 3300027909 | Populus Rhizosphere | VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGV |
Ga0209382_121457172 | 3300027909 | Populus Rhizosphere | VISSVLIQLGLVALVAGVVVTALVRAKKLGDRWDDWGLWGIFGGFGLVMVGVVLAVATAG |
Ga0247828_100082764 | 3300028587 | Soil | VISSFLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMVGVALSISTAP |
Ga0247822_102652011 | 3300028592 | Soil | VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMVGVALSISTAP |
Ga0307321_10502261 | 3300028704 | Soil | EFLILLGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE |
Ga0307276_100393961 | 3300028705 | Soil | VIEFLILLGLAGVLAGFVVTALVRAKKLGYRWESMGLWAIFGGFGLVMVAVALAIGTVE |
Ga0307293_100150992 | 3300028711 | Soil | MQLGLAGLVGGCVLTAVARVKKLEDRWETAGLWAILGGFGLIMVGVAMAVATF |
Ga0307301_100167272 | 3300028719 | Soil | VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAP |
Ga0307320_104816162 | 3300028771 | Soil | MAPSLLTLLGLASIFAGVVVTAFVRARKLGEDWEPRGLWAIFGGFGLFMVGVLLSIPTAP |
Ga0307288_100640762 | 3300028778 | Soil | VISSLLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFVS |
Ga0307288_102918693 | 3300028778 | Soil | LLTLLGLASIVAGVVVTAFVRAKKLGEEWDTRGLWAIFGGFGLIMAGVLLSISTAPP |
Ga0307278_101683251 | 3300028878 | Soil | SQEGDRRVIEFLILLGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE |
Ga0307277_103110552 | 3300028881 | Soil | MAPSLLTLLGLASIFAGVVVTAFVRARKLGEDWEPRGLWAIFGGF |
Ga0268240_100572122 | 3300030496 | Soil | LLTQLGLVGVLAGFVLTALARAKKVGASWEERGLFAIFAGFGLIMVGLVLAVAIAE |
Ga0268243_10640871 | 3300030510 | Soil | MISSLLIQLGLAGVLAGIVVTALVRAKKLGDSWDAWGLWAIFGGFGLVMVGVFLAIG |
Ga0268243_11353562 | 3300030510 | Soil | VIQFFTLLGLAGVLGGFVLSAIARAKHLGDTWESTGLWTIFGGFGLIM |
Ga0308199_10959402 | 3300031094 | Soil | RHSQEGDRRVIEFLILLGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE |
Ga0308187_100828001 | 3300031114 | Soil | LGLAGVLAGFVVTALVRAKKLGDRWESMGLWAIFGGFGLVMVAVALAIGTVE |
Ga0307408_1001371762 | 3300031548 | Rhizosphere | VIQSLMALVGLASIFAGVVLTALVRARKLGDDWEPRGLWAIFGGFGLIMTGLLLSIPTTP |
Ga0307406_119278291 | 3300031901 | Rhizosphere | IQLGLAGVLAGIVVTALVRAKKLGDSWDAWGLWAIFGGFGLVMVGVFLAIGTAG |
Ga0307416_1002063392 | 3300032002 | Rhizosphere | LTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA |
Ga0307416_1005777242 | 3300032002 | Rhizosphere | LILLGLAGVFAGFVLTVLARTKKLGDSWEDRGLWAIFGGFGLIMAAVALAVATAE |
Ga0307414_116333602 | 3300032004 | Rhizosphere | VIPFLTFLGLAGVLGGFVLMAIAKAKRLGDRWEFTGLWTIFGGFGLIMLSAVLAMATTA |
Ga0307411_118285032 | 3300032005 | Rhizosphere | VIPSLLILLGLAGVLAGFVLTALARAKKLGDSWEDRGLWAIFGGFGLVMVGVVLTIATAE |
Ga0307415_1004557711 | 3300032126 | Rhizosphere | VIPSLILLGLAGVFAGFVLTVLARTKKLGDSWEDRGLWAIFGGFGLIMAAVALVVATAE |
Ga0268251_100687242 | 3300032159 | Agave | VTPFLTLLGLAGVLAGFVLTAIARARKLGDNWESAGLWAIFGGFGLIMASVLLAIATAD |
Ga0307471_1013780441 | 3300032180 | Hardwood Forest Soil | VISSLLTLLGLASIVAGVVLTAFVRAKKLGEEWDTRGLWAIFGGFGLFMAGVLL |
Ga0334913_011253_1187_1366 | 3300034172 | Sub-Biocrust Soil | VVPFLTLLGLAGVLAGFVLTAIARARKLGDNWESAGLWAIFGGFGLIMASVVLAIATAG |
⦗Top⦘ |