3300006483: Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C4

Overview

Basic Information

• IMG/M Taxon OID: 3300006483
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117456 | Gp0124030 | Ga0100240
• Sample Name: Microbial communities from pig manure storage tank from Sherbrooke, QC, Canada, enriched culture C4
• Sequencing Status: Permanent Draft
• Sequencing Center: Agriculture and Agri-Food Canada
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56506304
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis → unclassified Methanofollis → Methanofollis sp. W23	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada
• Type: Engineered
• Taxonomy: Engineered → Solid Waste → Animal Waste → Unclassified → Unclassified → Manure → Microbial Communities From Manure Storage Tank From Sherbrooke, Qc, Canada

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal distal gut

Location Information

• Location: Sherbrooke, QC, Canada
• Coordinates
  • Lat. (^o): 45.4
  • Long. (^o): -71.9
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010099	Metagenome / Metatranscriptome	308	Y
F033483	Metagenome / Metatranscriptome	177	Y
F033857	Metagenome / Metatranscriptome	176	Y
F063807	Metagenome / Metatranscriptome	129	N
F071368	Metagenome / Metatranscriptome	122	N
F072352	Metagenome / Metatranscriptome	121	Y
F072355	Metagenome / Metatranscriptome	121	Y
F074887	Metagenome	119	Y
F088943	Metagenome / Metatranscriptome	109	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100240_104043	Not Available	955
Ga0100240_111112	Not Available	1009
Ga0100240_112169	All Organisms → cellular organisms → Bacteria	4816
Ga0100240_112171	All Organisms → cellular organisms → Bacteria	7065
Ga0100240_112179	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	3543
Ga0100240_115079	Not Available	3905
Ga0100240_115226	Not Available	2726
Ga0100240_115231	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → Methanomicrobiaceae → Methanofollis → unclassified Methanofollis → Methanofollis sp. W23	3822
Ga0100240_115233	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales → unclassified Methanomicrobiales → Methanomicrobiales archaeon	4471

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100240_104043	Ga0100240_1040433	F074887	MHYEVVWPSGDLLGIFPTYPAALQRARVWWDRGYTCRIRKCMVSLAPSALTMSAAVKKLRRGEE*
Ga0100240_111112	Ga0100240_1111121	F033483	VTPGDACVALDIDGLPVVLVLPERDAELIMWPYWANRILQEGRGDE*
Ga0100240_112169	Ga0100240_1121698	F063807	MKPPRTLSVSAALHTRLWLLKIRRNARTLEDVVEQALDALEEQEANDG*
Ga0100240_112171	Ga0100240_11217112	F033857	MVDVIDLSTLSPTPVIVKIGNGEEIEEIDLTIVPARGTLLLSEATQRHGGWEKIPDDEMIPAIAAICGQANPKITAEWLETKLTRPQLAGLTQVVIAQAFRRWGDKKDDNEQEPSEKNR*
Ga0100240_112171	Ga0100240_1121715	F071368	MDSLPRPVTTTDAYLARIVQQNDEIIALMKTEGERPKTRRLKEPKP*
Ga0100240_112179	Ga0100240_1121794	F010099	MTYPQSSFWTPARIGAVIGAVLLVVALAYLVSLPQNQFQPADLLEPKYAADADLGYWMVNKYDPEVDVYHLLVVMQHDNGTFEWLDGDGIWLPRSAVEGTFNVIGTFDRRKAHL*
Ga0100240_115079	Ga0100240_1150795	F072355	MSIINTTGITAAWHNLMFQLEMAKNHVDENGVADLQTIVFGVAGAVVALIVAVIVLGNLDTATQGTINESSVYYALLETVNQYGSTSLVLLAIGVIVAGAAAILYIIRGSF*
Ga0100240_115226	Ga0100240_1152265	F088943	MRGLSQSVIANEDHLVAIYRRTGDTSFTHAQIADLIPCGTMLRYTVLGIFIPARDSKGIPLKSGSRARSNVWCWHPRAAELCRQAIERDHRWENLANGLTGGSECV*
Ga0100240_115231	Ga0100240_1152316	F072352	MSSKTGGPFSNLRRASTVHHLPCCKNGCGEMLALDDGWQCPVCNWYRVYYRGERHP*
Ga0100240_115233	Ga0100240_11523310	F072352	MSSKTGGLFSNLRRAPTVVHLPCCKNGCGEMLALDDGWQCPVCNWYRVYYRGERHP*