Sample 3300005785

Overview

Basic Information
IMG/M Taxon OID	3300005785 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114881 \| Gp0119451 \| Ga0078432
Sample Name	Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten VI
Sequencing Status	Permanent Draft
Sequencing Center	Center for Biotechnology (CeBiTec), Bielefeld Univeristy
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	26085049
Sequencing Scaffolds	15
Novel Protein Genes	15
Associated Families	15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1
Not Available	4
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep-Sea Sediment Bacterial And Archaeal Communities
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Bacterial And Archaeal Communities

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine benthic biome → marine benthic feature → deep marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Fram Strait
Coordinates	Lat. (^o)	77.978277	Long. (^o)	0.163645	Alt. (m)	N/A	Depth (m)	3500
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003058	Metagenome / Metatranscriptome	510	Y
F013764	Metagenome	268	Y
F022015	Metagenome / Metatranscriptome	216	Y
F027541	Metagenome	194	Y
F028812	Metagenome	190	Y
F055778	Metagenome / Metatranscriptome	138	Y
F074900	Metagenome	119	Y
F077325	Metagenome	117	Y
F082716	Metagenome	113	Y
F087249	Metagenome / Metatranscriptome	110	Y
F091044	Metagenome / Metatranscriptome	108	Y
F093896	Metagenome / Metatranscriptome	106	Y
F093897	Metagenome	106	Y
F103292	Metagenome	101	Y
F105217	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F003058

Metagenome / Metatranscriptome

510

F013764

Metagenome

268

F022015

Metagenome / Metatranscriptome

216

F027541

Metagenome

194

F028812

Metagenome

190

F055778

Metagenome / Metatranscriptome

138

F074900

Metagenome

119

F077325

Metagenome

117

F082716

Metagenome

113

F087249

Metagenome / Metatranscriptome

110

F091044

Metagenome / Metatranscriptome

108

F093896

Metagenome / Metatranscriptome

106

F093897

Metagenome

106

F103292

Metagenome

101

F105217

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0078432_100099	All Organisms → cellular organisms → Archaea	4451	Open in IMG/M
Ga0078432_100239	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3420	Open in IMG/M
Ga0078432_100755	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	2383	Open in IMG/M
Ga0078432_101013	All Organisms → cellular organisms → Bacteria	2159	Open in IMG/M
Ga0078432_102445	All Organisms → cellular organisms → Archaea	1548	Open in IMG/M
Ga0078432_102820	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1466	Open in IMG/M
Ga0078432_103450	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1352	Open in IMG/M
Ga0078432_105440	All Organisms → cellular organisms → Bacteria → Proteobacteria	1113	Open in IMG/M
Ga0078432_109478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	864	Open in IMG/M
Ga0078432_115784	Not Available	673	Open in IMG/M
Ga0078432_116183	Not Available	664	Open in IMG/M
Ga0078432_122170	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
Ga0078432_123077	Not Available	550	Open in IMG/M
Ga0078432_125668	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon	519	Open in IMG/M
Ga0078432_126622	Not Available	509	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0078432_100099

All Organisms → cellular organisms → Archaea

4451

Open in IMG/M

Ga0078432_100239

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota

3420

Open in IMG/M

Ga0078432_100755

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon

2383

Open in IMG/M

Ga0078432_101013

All Organisms → cellular organisms → Bacteria

2159

Open in IMG/M

Ga0078432_102445

All Organisms → cellular organisms → Archaea

1548

Open in IMG/M

Ga0078432_102820

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus

1466

Open in IMG/M

Ga0078432_103450

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus

1352

Open in IMG/M

Ga0078432_105440

All Organisms → cellular organisms → Bacteria → Proteobacteria

1113

Open in IMG/M

Ga0078432_109478

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium

864

Open in IMG/M

Ga0078432_115784

Not Available

673

Open in IMG/M

Ga0078432_116183

Not Available

664

Open in IMG/M

Ga0078432_122170

All Organisms → cellular organisms → Bacteria

562

Open in IMG/M

Ga0078432_123077

Not Available

550

Open in IMG/M

Ga0078432_125668

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon

519

Open in IMG/M

Ga0078432_126622

Not Available

509

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0078432_100099	Ga0078432_1000992	F082716	MIDKKDFRQMPFTFIIAPILLVALTSVVAITYGEMIEEKELIVTLSCPDLKEYTENQFIESKLYFGHEVYLNYAKELYRDFC*
Ga0078432_100239	Ga0078432_1002393	F105217	MESGMNTNKERNLLIDSIQYRIFYSEINLDKIPTSISLDVFPNDKISTEIVIDGFLFYANGSLDLVFAEINKKLSLGLAPNQINPSDIIHALEEKNTNEAMAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYESRNQVKYQHFWNRASSRLWEIRNQQKLESYDSLLKNAGTIGKDKPRNYLRVKLVDDDHPAIFWDSAHYENPKRYFTNILYLVKQFIDKILEILKPLYPLDSNLVSK*
Ga0078432_100755	Ga0078432_1007553	F093897	MGIAITGLVVGFVLLYDIQQEKEVQNVWIQKIPTQCNDVWEEEYNEFYEINPEMRDAAKEESKEFVEGIIKNHYEKHGINILDLSLELNVYEGVRCEACNCLGWDRLSIKISENELDLISDSEGWEPKG*
Ga0078432_101013	Ga0078432_1010134	F087249	MQDTDEPTTQGIRARMEAYFTAASESTEIDPTDFGAIDEIATKFLDSLTPREMGILMYDDPQPLSLQEVDNDIKKKYRAKYGTKNLKRGQFFRLKSGTITFFTHEHNLKFKVDN*
Ga0078432_102445	Ga0078432_1024453	F013764	MSMSTPSFFFFRNSKKNKSTSGLPPYSKRALIAVTVAIPMAFGLNIPLNTFGAFMPVWGIIMINAIVIPSYMTFIIPRASKLFATWLNPTITKGVN*
Ga0078432_102820	Ga0078432_1028202	F055778	MLSNVDLPEPELPTIKTTSPCSIESDTLSRAFTLFSPSP*
Ga0078432_103450	Ga0078432_1034503	F077325	MSRKGNWTEKDEATIKAIVVNMINQKQMFRELGETGELHDSFDVKNSREYVLGLFTGIVINLFANYWVSEHEAGLLPEDLAYLYHKIALFHDMIVEGLFE*
Ga0078432_105440	Ga0078432_1054401	F074900	MAAKIVNLANPDVGETLCVSVEDAEQALAAMVERFKSQGYRVDEQHMPDEDYPQYKVIDFDDAWVGTYTIILE*
Ga0078432_109478	Ga0078432_1094782	F103292	MNLRWRFETQLPYGRFVAVVSEDGDGFSAEIEGKIVASPRTEDARIRDRKITDQYYGPKSVRAHSLEALRRTVDEKIENDIGPVNKWTADPG*
Ga0078432_115784	Ga0078432_1157842	F028812	MNPDLDNVIRQAIGDAHAAGIDHIGQTVVAVQAVQLARPDMTAADAVAAVNRMRRS*
Ga0078432_116183	Ga0078432_1161834	F027541	MLSDFINVMNFIFIANDMWMLWTAFILGGAFIWKIKK*
Ga0078432_122170	Ga0078432_1221702	F091044	GSLALASLNRACRDHRPDFSATLTTMAFDHSSLR*
Ga0078432_123077	Ga0078432_1230773	F093896	MELTSSERNIILVSLDHMEEHLFIIYEAGDITQDTFNLRMNTWKTAYKKIAKIND
Ga0078432_125668	Ga0078432_1256681	F003058	MTEKEMDRIAEMVVDKIISRQKAYDEEFKAEIQEMVGKDADVEFGTITEDEIIAEELVKLQDRLNQLEAKEDYEAAGIVANKIKHLKNKYNL*
Ga0078432_126622	Ga0078432_1266221	F022015	TMRQYRTWQQAFDEMNASVLKHEIICAIASEVAGKPVENLIGFTNEQRDLVWNDYYNTTELC*

Scaffold ID

Protein ID

Family

Sequence

Ga0078432_100099

Ga0078432_1000992

F082716

MIDKKDFRQMPFTFIIAPILLVALTSVVAITYGEMIEEKELIVTLSCPDLKEYTENQFIESKLYFGHEVYLNYAKELYRDFC*

Ga0078432_100239

Ga0078432_1002393

F105217

MESGMNTNKERNLLIDSIQYRIFYSEINLDKIPTSISLDVFPNDKISTEIVIDGFLFYANGSLDLVFAEINKKLSLGLAPNQINPSDIIHALEEKNTNEAMAMIEEFQKYFQKPIHEEKIISDQEFNDGLNRYGYDIIGFHAEYESRNQVKYQHFWNRASSRLWEIRNQQKLESYDSLLKNAGTIGKDKPRNYLRVKLVDDDHPAIFWDSAHYENPKRYFTNILYLVKQFIDKILEILKPLYPLDSNLVSK*

Ga0078432_100755

Ga0078432_1007553

F093897

MGIAITGLVVGFVLLYDIQQEKEVQNVWIQKIPTQCNDVWEEEYNEFYEINPEMRDAAKEESKEFVEGIIKNHYEKHGINILDLSLELNVYEGVRCEACNCLGWDRLSIKISENELDLISDSEGWEPKG*

Ga0078432_101013

Ga0078432_1010134

F087249

MQDTDEPTTQGIRARMEAYFTAASESTEIDPTDFGAIDEIATKFLDSLTPREMGILMYDDPQPLSLQEVDNDIKKKYRAKYGTKNLKRGQFFRLKSGTITFFTHEHNLKFKVDN*

Ga0078432_102445

Ga0078432_1024453

F013764

MSMSTPSFFFFRNSKKNKSTSGLPPYSKRALIAVTVAIPMAFGLNIPLNTFGAFMPVWGIIMINAIVIPSYMTFIIPRASKLFATWLNPTITKGVN*

Ga0078432_102820

Ga0078432_1028202

F055778

MLSNVDLPEPELPTIKTTSPCSIESDTLSRAFTLFSPSP*

Ga0078432_103450

Ga0078432_1034503

F077325

MSRKGNWTEKDEATIKAIVVNMINQKQMFRELGETGELHDSFDVKNSREYVLGLFTGIVINLFANYWVSEHEAGLLPEDLAYLYHKIALFHDMIVEGLFE*

Ga0078432_105440

Ga0078432_1054401

F074900

MAAKIVNLANPDVGETLCVSVEDAEQALAAMVERFKSQGYRVDEQHMPDEDYPQYKVIDFDDAWVGTYTIILE*

Ga0078432_109478

Ga0078432_1094782

F103292

MNLRWRFETQLPYGRFVAVVSEDGDGFSAEIEGKIVASPRTEDARIRDRKITDQYYGPKSVRAHSLEALRRTVDEKIENDIGPVNKWTADPG*

Ga0078432_115784

Ga0078432_1157842

F028812

MNPDLDNVIRQAIGDAHAAGIDHIGQTVVAVQAVQLARPDMTAADAVAAVNRMRRS*

Ga0078432_116183

Ga0078432_1161834

F027541

MLSDFINVMNFIFIANDMWMLWTAFILGGAFIWKIKK*

Ga0078432_122170

Ga0078432_1221702

F091044

GSLALASLNRACRDHRPDFSATLTTMAFDHSSLR*

Ga0078432_123077

Ga0078432_1230773

F093896

MELTSSERNIILVSLDHMEEHLFIIYEAGDITQDTFNLRMNTWKTAYKKIAKIND

Ga0078432_125668

Ga0078432_1256681

F003058

MTEKEMDRIAEMVVDKIISRQKAYDEEFKAEIQEMVGKDADVEFGTITEDEIIAEELVKLQDRLNQLEAKEDYEAAGIVANKIKHLKNKYNL*

Ga0078432_126622

Ga0078432_1266221

F022015

TMRQYRTWQQAFDEMNASVLKHEIICAIASEVAGKPVENLIGFTNEQRDLVWNDYYNTTELC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300005785: Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten VI

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences