3300005264: Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562

Overview

Basic Information

• IMG/M Taxon OID: 3300005264
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114726 | Gp0115316 | Ga0073581
• Sample Name: Hydrothermal sediment microbial communities from Guaymas Basin, California, USA 4572. Combined assembly of Gp0115316 and Gp0146562
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Texas, Austin
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 291954024
• Sequencing Scaffolds: 32
• Novel Protein Genes: 54
• Associated Families: 51

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	11
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota	1
All Organisms → cellular organisms → Archaea	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	2
All Organisms → cellular organisms → Bacteria → FCB group	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2
All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment → Hydrothermal Sediment Microbial Communities From Guaymas Basin, California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: Guaymus Basin
• Coordinates
  • Lat. (^o): 27.013056
  • Long. (^o): -111.519722
  • Alt. (m): N/A
  • Depth (m): 0 to .12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005243	Metagenome / Metatranscriptome	407	Y
F007460	Metagenome	350	N
F008501	Metagenome	332	Y
F013049	Metagenome / Metatranscriptome	275	Y
F014691	Metagenome	260	N
F015290	Metagenome	255	N
F015411	Metagenome	255	Y
F018717	Metagenome / Metatranscriptome	233	Y
F019588	Metagenome	228	N
F019935	Metagenome	226	Y
F023017	Metagenome	211	Y
F024453	Metagenome	205	Y
F025034	Metagenome	203	Y
F028664	Metagenome	191	Y
F029623	Metagenome	187	Y
F029954	Metagenome	186	N
F035145	Metagenome	172	Y
F036294	Metagenome / Metatranscriptome	170	Y
F039146	Metagenome / Metatranscriptome	164	N
F040421	Metagenome	161	Y
F040567	Metagenome / Metatranscriptome	161	Y
F040581	Metagenome / Metatranscriptome	161	N
F042112	Metagenome	158	N
F042625	Metagenome / Metatranscriptome	158	Y
F044793	Metagenome	154	N
F048391	Metagenome / Metatranscriptome	148	Y
F049343	Metagenome	146	Y
F050065	Metagenome	145	Y
F050310	Metagenome	145	Y
F056226	Metagenome	137	N
F056961	Metagenome	137	N
F060609	Metagenome / Metatranscriptome	132	Y
F060924	Metagenome / Metatranscriptome	132	Y
F062246	Metagenome	131	Y
F063346	Metagenome	129	N
F066330	Metagenome	126	N
F068117	Metagenome / Metatranscriptome	125	N
F068714	Metagenome	124	N
F070560	Metagenome / Metatranscriptome	123	N
F072848	Metagenome / Metatranscriptome	121	Y
F072934	Metagenome	120	N
F076639	Metagenome	118	Y
F078539	Metagenome	116	Y
F085719	Metagenome / Metatranscriptome	111	N
F092080	Metagenome	107	Y
F092871	Metagenome	107	N
F094909	Metagenome	105	Y
F097367	Metagenome	104	Y
F098044	Metagenome / Metatranscriptome	104	Y
F099975	Metagenome / Metatranscriptome	103	Y
F102489	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0073581_100056	Not Available	45550
Ga0073581_100619	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota	21185
Ga0073581_101090	All Organisms → cellular organisms → Archaea	18844
Ga0073581_101251	Not Available	16236
Ga0073581_101395	Not Available	19503
Ga0073581_101831	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	14029
Ga0073581_101844	All Organisms → cellular organisms → Bacteria → FCB group	14726
Ga0073581_101930	Not Available	14750
Ga0073581_102055	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	71834
Ga0073581_102336	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	14890
Ga0073581_102347	All Organisms → cellular organisms → Archaea	23785
Ga0073581_102540	All Organisms → cellular organisms → Bacteria	32572
Ga0073581_103334	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	27755
Ga0073581_103733	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	17570
Ga0073581_105188	Not Available	19798
Ga0073581_105890	All Organisms → cellular organisms → Bacteria → PVC group → Candidatus Omnitrophica → unclassified Candidatus Omnitrophica → Candidatus Omnitrophica bacterium	8549
Ga0073581_106224	Not Available	9187
Ga0073581_109247	All Organisms → cellular organisms → Bacteria → Proteobacteria	7297
Ga0073581_110368	Not Available	6510
Ga0073581_111381	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	10648
Ga0073581_112568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5917
Ga0073581_112901	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon	5844
Ga0073581_113972	All Organisms → cellular organisms → Bacteria	5606
Ga0073581_114535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	5693
Ga0073581_115009	Not Available	5399
Ga0073581_115482	All Organisms → cellular organisms → Archaea	5311
Ga0073581_115551	Not Available	9654
Ga0073581_116653	Not Available	5105
Ga0073581_118754	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	13346
Ga0073581_120318	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11068
Ga0073581_120816	Not Available	6420
Ga0073581_123682	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	9383

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0073581_100056	Ga0073581_1000568	F008501	MIFCVQDRGGPAHCHLVLPHVTKMEKYNRMEFKLKNSSVDLTDLAIGIVVLGIVVSIGATILLNVRDTNTSGDTAYNLADSAAAGLAEYGNWFDIIVIVGVAAVILSLIFMAFGRRGGGSSVTY*
Ga0073581_100056	Ga0073581_1000569	F008501	MEIKLKNSSVDLTDLAIGIVVLGIVVTVGATILLNVRDTNYVVSATCNDTSNIHTGCDSAWTLADSAASGIAEYGNWFDIIVIVGVAAVILSLIFMAFGQRGSGSGMQSY*
Ga0073581_100619	Ga0073581_10061916	F062246	MVLHMERKLRSISGSLVVTIPKQVCDLYGFNDGDMLNIEPIGVGELRLRKK*
Ga0073581_101090	Ga0073581_10109012	F056226	MRAYDILLFLVCLEASIGFIASIDLFSTTYVDPSAVQLTDWNVQEIQNQSSSPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME*
Ga0073581_101090	Ga0073581_10109014	F007460	MDDEEGIGIGTAIFVVMLNIVFAIVFFFLVGSVMCGILPPLTTIVGIDETTPFGQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQYQEEEEM*
Ga0073581_101090	Ga0073581_10109015	F015290	MLNNKGQAGEIAVFVILVFMVAFAYIFISPVVQNIKDVTPTIADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV*
Ga0073581_101090	Ga0073581_10109016	F024453	VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVGEEVKSVREEGREEDMDKVRSVHELAQVRRANAKQ*
Ga0073581_101090	Ga0073581_1010902	F019935	MPKVKETANRTVVHVGDLWKRYHRASPKTKKRWKFRIKDVGRLRYSELILCKPPNGDWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENDDLRGWKLAFKG*
Ga0073581_101090	Ga0073581_10109020	F042112	MTFDEYSSAFPQFEEKYVSKLAYPHLLFIQIQKIMDRIDAGGDGKEELESLKALLKPSWRGEIDVKTERCRREMEREINRIARVKERVGITTYKEMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGLML*
Ga0073581_101090	Ga0073581_10109024	F023017	MRLKKEKREEMKQKIIEFLKNADGHIASIPMLARAIQASSPTAKSIVFELEVERKVSVVMLGGECVVKLEGG*
Ga0073581_101090	Ga0073581_10109026	F029623	MNTYAKYVRARFERGNLIVEISKDAFKDAETRKEATKELQQIIKTYFSIRFFIRLSIVYAFTALFCACVALLMLLK*
Ga0073581_101090	Ga0073581_1010905	F072934	MVGIDIERLLADEEIREKMNEWNREKAKRRLESMKNLSEPHRRYLEKIASGEWKVW*
Ga0073581_101090	Ga0073581_1010907	F019588	MGEEKRIEEEVRGVLERLKVPYSVEIVIVDDKSGKVVFRWRRGRGNLVKGMRKTIEVLDRKIGIPVKDLLK*
Ga0073581_101090	Ga0073581_1010908	F040421	MRGERVRAITMLTLAFTIGFKSIILFLQHSFGFAFALLLLAWTCICFAFPDQLIGASIGQDLKLGEVIEKWVRRRELKRK*
Ga0073581_101090	Ga0073581_1010909	F014691	MSRGIGFVSAILILIFVVVGVFTLSIAWSEIPVEPQANTSLANTSSIIPALTSFLPYLVLVVILAMAIGVFLSLVRVR*
Ga0073581_101251	Ga0073581_10125113	F085719	MVNETWNGIKYDNYHCNDKDLLDGLDTVSFTKLSEQDMKNEIDHFLDKKQDLLHIQDLVHEARIDWYSNTYPGEYTGD*
Ga0073581_101251	Ga0073581_10125135	F060924	MAQGISIGIGIPRGLTGNAGFPTAFDEIVSESGDFIIAESGAYPTYMIVE*
Ga0073581_101395	Ga0073581_10139530	F097367	MERQSYYNVRYAGKLIQVIPAHTKWEAIDRIYNKNIGTHPWIKREKFTAVKSKN*
Ga0073581_101831	Ga0073581_10183118	F099975	MSNFSQGKEIKELRGGVQVDAAQVIPQIDAEIAEKGHFWMHTN*
Ga0073581_101844	Ga0073581_10184411	F092871	MGRKSVYLKQIEHLLSVGYEAKDIVKITNIPKGTIYRIVDQLREEAKTNFDQLMTKDYLYKYQMNLDNYSKTIIQCNIEIDTINVKYDELEKVVMDSLEVCPIDKYIARSAYMTNLINIRNNRTIEIQKLIAQRDKSSEMKAKIFNSGPVVYRINQVVESKVLQPEMLNEKPRVEFVQKDVKHEISEDDLQVLKEMEEND*
Ga0073581_101844	Ga0073581_10184413	F072848	MTNLIDNEKIDIGFNELDMAMEKIINEHKLNFYEVLSVLAMMDTKVKQNNISQYLLETVTRFQELLNKEDRDGR*
Ga0073581_101930	Ga0073581_10193023	F040581	MEFLENGNFNGIKFLGKRRVYNGYLNKEQSWKEYQQWAEKNIY*
Ga0073581_101930	Ga0073581_10193027	F025034	MDSKKAYEIMKEEYVDREALELCNQIEKQLERIISYDDGFLNDRTFDEIKKSAIKLLKEWHL*
Ga0073581_102055	Ga0073581_10205573	F063346	MNVEHRIMYSTIYNKDKATDRRLSEPTKGRRALSTARDGGQERLQHSTFDFDVKIIASEITTKSSYHVEIRYTGQEV*
Ga0073581_102336	Ga0073581_1023363	F063346	MNVEHRIMYSTIYNKEKATRPPRLSEPTKGRRALSTARDGGQERLPHSTFDVERSMFDVQIVASKIATKPSCCVEMTYTCQEF*
Ga0073581_102347	Ga0073581_10234738	F015411	MPRSSYGRKDGSGRGWKEGGRGRNRTNICRHPNIRKRRR*
Ga0073581_102540	Ga0073581_10254035	F040567	MKKYIVVERNRKFDSFDLINEDTNGLNEIWESHIPYKLNEDEKPNVRPLIFDNRSEAVKYKNKAQSDRDRDWRENDYIYKSFGDLKPKWKIEEYTGNLFK*
Ga0073581_103334	Ga0073581_10333415	F048391	MNDGKSVEPINTLDYLKELLDDGYVVKGPRKDPSRDLISFKAFLKKGKEFVPELWLSNMGYEFVEPSTFTKGHKIAYKIIDEFPDERFNSNYTLVKGEKIFPLYLKVEVPKVE*
Ga0073581_103733	Ga0073581_1037331	F056961	MYSTIYNEDKAKRLPHSTFDVERSMFTRLRRRQRRPGFDVQIVASEITTKPSYHVETMYTDQ*
Ga0073581_105188	Ga0073581_10518830	F050310	MASMQAFIVGIVLVGVTLVIGIFISAEIADQMDTGSAEANAANDLVTALSGGSAWITILVVVGFATIVLGMLTQGLGRSADVAGPVY*
Ga0073581_105890	Ga0073581_10589013	F102489	MSSRKGYRSQAEAAEEYKKRGWGVFVPQKSKYGAQDIFGMFDLVAISPDGSEIHFVQVKSNSTRGFLKKLKEWREKHVVKKVEWRLMVRLDARKHKKKWKVYH*
Ga0073581_106224	Ga0073581_10622413	F018717	MKITIEHYDEKVSIETKHDDITFADFMQLVRKVAHTVGYGTKTINEWYNG*
Ga0073581_109247	Ga0073581_1092479	F036294	MDRGFSDEAIVGVKPAADEDAVTYQRVKLSENDKDVGAEGRNM*
Ga0073581_110368	Ga0073581_11036810	F039146	MKNKKNCGCFSKYMKPSVKGTKGSKGRNGWDAKPVFRITNPGRR*
Ga0073581_111381	Ga0073581_1113813	F056961	MNVEHRTSNVEHRIMYSTIYNKDKAKRLPHSTFDVKRSMFDVQIVASEITTKPPYHVEITYTGQEF*
Ga0073581_112568	Ga0073581_1125685	F094909	MLNKKVLDWIEGYVLSRMLIFGDFVGTVKRSDLIFDLDTTSEYFRKHEGQRIQSLSLPVKSRNLSTLLGEIEDCFQQGWILMDNGEWTEAEFDRVYELSRRVITEIALLRQELNQENPEPYFPLSDPMHLK*
Ga0073581_112901	Ga0073581_1129015	F068714	MKILETNKSHIIYKEDSGIVSIVPNTPYFNMKVLENKNKRIKFDLPIEGIEILETFNGMIFNISLNGKTITTRPNMADAVVESFTDTDKIYKIFDDYNNNKYNLKLLSGILEKYGERIKTRPDGFVIDDIFLVDRTGVCWLWDDKNNCRNKNHRTNLGSGAICIVVDKTQRLKLNTKNGLVEIDEMGYIILSKIEFLMQPNLNDTVFMHQVPKKIQTILQRNKKLYK*
Ga0073581_112901	Ga0073581_1129018	F070560	MLMTNQTQQFKQLVSSAKPETQIPKTESMVTVSSLMSTADQVQFGKGLSSIFVDVPHHTSGESQIFSVRPQQLVPRSAVIQRDESSQLVGISAVSGG*
Ga0073581_113972	Ga0073581_1139723	F076639	MKNSEIKKGQDRAPILWMHEAITYLGLDRLGLTRPDKAMYRLIKKGALHPKKIAGHFAFDKSELDIVVANGDQKRGRGRPKKIHSA*
Ga0073581_114535	Ga0073581_1145352	F078539	MVRPFTDRENFIVASVIMVVSDKMKSVSRETRTNILQYIRETKYPGVTDQDWKDIANGIDAHKKDVFSVMVKAFHESSSNPSVSSNKAFATLDTDMKAEIEDIDFDELKSIVDESDDPKLREYYLTMKQLKRDFDDDRKK*
Ga0073581_114535	Ga0073581_1145354	F098044	MNTTSITNKQAVIGVNSTYETVLVIEGIILNNPMMSDLQDIAKLNKTNLCKMALMEFMRNPVSSRKLKRLFIAANNDDKFRFVMQGGQL*
Ga0073581_114535	Ga0073581_1145356	F042625	MTDKAEKDKLWKDLKIQWSYLKRDSGADEVKKGEAKKRINEIQEALKLDKTDWNQPRSGPPGSHLTNAGASPMPSNNALVEKILGTVLDMKRTVNEDLIALTQKINNLEEVVKKGACNCAPPSDTPLD*
Ga0073581_115009	Ga0073581_11500912	F068117	MSENVKTINPANAPTVEKSKSLGIAKLASGKKEFYITGCQHNRGTPSQYTRADQIGEDGKTDYYTIKVETPIELEYKEEGKIPIDNFFVTPTIYQQIERIPNALEGINTGARLGPVKAVKRESQKTTNSYWCLAFESDPDF*
Ga0073581_115482	Ga0073581_11548210	F029954	MELKVREYKFNDGERKVEYVIPPTNTPFFSVVFSKRGGVRMIAIHQRVLEYHEAVVLISLLCGVIKNERGNGYRDGSSTLYH*
Ga0073581_115482	Ga0073581_11548215	F066330	MAEGEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSEFVREAIKKAVEEVLQARSEK
Ga0073581_115482	Ga0073581_1154822	F049343	MEWSRLRDKLRKGEWHAFSAACFIAGVVVGKEITTLGRAEPILALTAVGAVLLAYWLALLTATIIAEIKEAPKTI*
Ga0073581_115482	Ga0073581_1154823	F035145	LEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTARTSFPLLSLTYNRHTDNFILTVERKFITQQSTLKALIEALESVKEVMLNGMEQIER*
Ga0073581_115482	Ga0073581_1154824	F050065	MNMLKATASMEQQILLAIAYLKGLLRDARRRGDKEVVRYIGEIIGVYEARLQPQNNNN*
Ga0073581_115551	Ga0073581_1155516	F013049	MDQDVETQFHTIDLFIRSVLDDMDKVSKSTRKIDIMAYIDSWKTELKTVQHIINL*
Ga0073581_116653	Ga0073581_1166532	F005243	MSDSKTNSNLQDKDPKMSKEEMSARRDEITQFYNDNIPHLEVQADYETLLATIEKARAERMQAQMFMAQQYAAQKGEGAPDLNTEEGKAFQEAMVKAMQDETA*
Ga0073581_118754	Ga0073581_11875425	F028664	MKNQILIGGQALRELGSDRYTNDIDYLINDESSTEAFKTSKEVDYLNANGNKFFNEIYKIEKNNKIASPQSLLELKAYAFVQHCQNYNWEKVDSSEYDMKFLVRKFKLNSVSIVKNFVSNGELFEIEKIIKSVKF*
Ga0073581_120318	Ga0073581_12031812	F092080	MQDKRVTIRIPFEIWKALRELQTLGKISSIQQAAVSGMDRLIESLKTGDEENRRDAAKERILNILSAAKPLGNWEDIHRERSEADADRS*
Ga0073581_120816	Ga0073581_1208165	F044793	MIINTSSYTNAIPVALNDNINIPGPTVRASGTTTSLTNNKLVDTNANFVQVIDAKGNITNQGVQRGQIVYNMAAMNTTAWLGPEAAEILEVENNNTLVLSANIFPVTGAPSTTQEYKIYDANKTNPKGAIIMVGDNIAGNNTKSDVFVKTLDGEDVLVQGVAPGETLDLVVQRVMVGSAATSGAPSTLTTAEKITAFI*
Ga0073581_123682	Ga0073581_1236823	F060609	VIGDAQVDSIDRRDFCKKAIKRSSVAATVGVAGYIAYKKPAIRSFFGAKDAYAASTTAAGKFSLKGDSN*