NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300004628

3300004628: Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4 (version 1)



Overview

Basic Information
IMG/M Taxon OID3300004628 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0046201 | Gp0055637 | Ga0070399
Sample NameMicrobial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4 (version 1)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size550558223
Sequencing Scaffolds23
Novel Protein Genes25
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter7
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → PVC group1
Not Available3
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMicrobial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa
TypeEngineered
TaxonomyEngineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationLawrence Berkeley National Laboratory, California, USA
CoordinatesLat. (o)37.8754404Long. (o)-122.2477251Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007590Metagenome / Metatranscriptome348Y
F010231Metagenome306Y
F011839Metagenome / Metatranscriptome286Y
F014318Metagenome / Metatranscriptome264Y
F017253Metagenome242Y
F033667Metagenome / Metatranscriptome176Y
F042777Metagenome / Metatranscriptome157Y
F046771Metagenome / Metatranscriptome150Y
F051629Metagenome / Metatranscriptome143Y
F063257Metagenome / Metatranscriptome129Y
F063258Metagenome / Metatranscriptome129Y
F063339Metagenome129Y
F067328Metagenome / Metatranscriptome125Y
F067350Metagenome / Metatranscriptome125Y
F078103Metagenome / Metatranscriptome116Y
F080760Metagenome / Metatranscriptome114Y
F083634Metagenome112Y
F084257Metagenome / Metatranscriptome112Y
F084897Metagenome / Metatranscriptome112Y
F086460Metagenome / Metatranscriptome110Y
F091596Metagenome / Metatranscriptome107Y
F106182Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0070399_1000062All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae101260Open in IMG/M
Ga0070399_1000097All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter85515Open in IMG/M
Ga0070399_1000270All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter58309Open in IMG/M
Ga0070399_1000428All Organisms → cellular organisms → Bacteria47929Open in IMG/M
Ga0070399_1000470All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae45454Open in IMG/M
Ga0070399_1000548All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter41952Open in IMG/M
Ga0070399_1000582All Organisms → cellular organisms → Bacteria40775Open in IMG/M
Ga0070399_1001542All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter23793Open in IMG/M
Ga0070399_1002641All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter16905Open in IMG/M
Ga0070399_1003660All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes13387Open in IMG/M
Ga0070399_1003933All Organisms → cellular organisms → Bacteria12694Open in IMG/M
Ga0070399_1004952All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter10659Open in IMG/M
Ga0070399_1012305All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter5302Open in IMG/M
Ga0070399_1014865All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4543Open in IMG/M
Ga0070399_1016893All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales4109Open in IMG/M
Ga0070399_1020106All Organisms → cellular organisms → Bacteria → Proteobacteria3557Open in IMG/M
Ga0070399_1024266All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3043Open in IMG/M
Ga0070399_1031899All Organisms → cellular organisms → Bacteria → PVC group2424Open in IMG/M
Ga0070399_1069312Not Available1257Open in IMG/M
Ga0070399_1079068All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1122Open in IMG/M
Ga0070399_1110983Not Available837Open in IMG/M
Ga0070399_1161585All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae602Open in IMG/M
Ga0070399_1174195Not Available563Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0070399_1000062Ga0070399_100006267F080760MTIKTTAAALSAEQALPIVDPQRETCVEFVKFCKEQHLKSRAAHTFLRVFHNKSWNAECEKIRESMRPEVNRIFEPAEKALNEGANCKEVLALLVRSLKEAEDL*
Ga0070399_1000081Ga0070399_100008149F033667MILLVTSNDRRVECGVVLERAVGESVEVCESVRKAASRLRNNEYSAVIMDDPMVEADGEALESLLNNLGLAIPVYVNLAVSNADRIARELRVAQRRNRESRMIAVRAAESQLRSEIRDAVTGILLSTELAMTTPDMPMDALEKLTSVCQLASNIRSRLEVVN*
Ga0070399_1000097Ga0070399_100009715F063257MRFPIRSMAIMKPHPGKRPDLIAFLREFYTMMCTKQYSRDLLLQDLKHPDDLVHIRYWLSDEARDAAMNDPDVHHYWKDLGAFGNITTIYEELEPIFSTREGIPGDDIIQAATKSDSA*
Ga0070399_1000270Ga0070399_100027023F067328MALVWMVECKICAQRFPVLPRKAVKGKSTDSLVPHSGAGRFECPHCHELQDYSTDDFIPGEGHIVPSPKPE*
Ga0070399_1000428Ga0070399_100042839F007590MEHPESPSGRYQAQIAVAKKVLEQKEDWANRAEWEVVKTRDGWEVYAWRVEHPKAKGAKRYLPWGYSVIELDNGLVPLTYHKKG*
Ga0070399_1000470Ga0070399_100047012F046771MGERVSQLWFSEFILSGSDMTNDRKLFFFALALVLFLAASCKRGAEKKFKPSKLAGELYSGQSLQKVERTLDIMAGNFDTVEDRKPLPSDTRPPYRLLVISKKNARVEGQTGELMLTFFNDRLMTSQFYPADLATARAAVEAGQSLSLASGESHIEPSTRVWVGKDQNGRTYIGWIDKSLQAEQDAWVKQYGQ*
Ga0070399_1000548Ga0070399_10005487F042777MSHERRQFVISIQAQPFRKKTRYYWIICRENNPDELVSWGFAPTQELAEIESSNEVRDLISGLTQGGRVDGTRYSAIHRC*
Ga0070399_1000582Ga0070399_10005823F063258MCAFVVLGVLEWITLSPETVRVINGPNGVPPLEVSLRGVSVAVLVLFAFRSWIHFRREMREERERSGRE*
Ga0070399_1001542Ga0070399_100154226F106182MKWMDRLFAWMLVALGGAHLLALWIPKLGLLRGPWTGGAAVAIISAGLMNAVRSRRKSDRFLRWCTALATLLTAAMCLITLYRFSGNVLHQPAALAISVLAVVELFFCVAR*
Ga0070399_1002641Ga0070399_10026414F086460MLRHAPNPSSVKTMRLSAVLLLLATTLFAAPPTWKPASFSGLIIGQGRRQDAVRLLGTPDAFQRTRSGEELTYRARGDHKGDLTVRLDPSGIVVEVQEAFPIAIPRTQIYKEFGKDALTAHFSRAKCASDALYRNPRGVIELTLYPSRGIVLWPDQNGYDFAAILYTAKQPGLSRPPACMATVKH*
Ga0070399_1003660Ga0070399_10036601F010231RLWALAGDVHSGGFAPAFTLSFHDSECSRKPPNAHSLGR*
Ga0070399_1003933Ga0070399_10039334F051629MPLSANRIWRQLPNEIRVSASKVFWAETTKEQKQFLFAALAKANNVREISVRRAPIERLVNWTAATLTLPDQIANNLLQDYLLHDHRAMIVSYVESLGIPHSDGIIEEGFDLASLPKERVQDAARTLLASPDRQAAELYLKYLVVQGGPWSVIEEVLPTGDA*
Ga0070399_1004952Ga0070399_100495210F084257MNARKTMKQFYTETEVAHALCISLEALHELLDKHVFDLDNPRPDVLEFTHAELLLLSVWAEPERACNVITMPGKDQIFI*
Ga0070399_1008326Ga0070399_10083262F091596MHDPGSEAPQTGIYWCSVCKLPVQFKAGEVLPKCKNLCGRGKWEFIKATAAEK*
Ga0070399_1012305Ga0070399_10123057F078103MKVEGIKVLSLVMSIAMVAVIVLSLAGGVGLGYAIIFGILNAFDRSRQLIKAAPTQVLTNSASSR*
Ga0070399_1014865Ga0070399_10148658F011839MKPLPVPHVPGNTDAERFDNAVRKIFTVSKDDILKAEAKWKQSRARKQRAKKTA*
Ga0070399_1016893Ga0070399_10168937F083634MYIMLKMADQTISLDRIRIGGRVCRLARKLFVTVEHENDRLTLSNEEFGLVVSAETLEEGIAGISEELATLWEVYVDADPANLTADALRLRSNLTSLVPAGVSL*
Ga0070399_1020106Ga0070399_10201063F063339MNATQNPVGQSAEFHQTWQALMQQLERVLSLAHQRQPNRTETREAVSIAKHLLGKVGDQIDTANPE*
Ga0070399_1024266Ga0070399_10242661F010231MGHWLAEVQFGGFAPAFTLSFHDSERSRSPPKTHSLGRYGQV*
Ga0070399_1031899Ga0070399_10318992F084897MAKSDAFAETSKARFEVATAQEVNLGVGGSFKAAEIGVLGTSGGLND*
Ga0070399_1069312Ga0070399_10693123F017253ALSSANGGSYTQGRIADPESSGSSRNAARAERCTPKTTAAALDG*
Ga0070399_1079068Ga0070399_10790683F014318MGHTGESMSDLYDKIKEDVAFRKQWAEKCGFGFELPSIVPNVPKTRAKSKSMKAA*
Ga0070399_1110983Ga0070399_11109832F067350MLKKKVYDETAGVAALRRGYQPTLYFEQIATAPHKFMNYSG*
Ga0070399_1161585Ga0070399_11615851F067350MLKKKVCDDTAGVAALRRGYQQTLYFEQIATATHKFMNYSG*
Ga0070399_1174195Ga0070399_11741952F067350MLKKKVFDDTAGVATLR*GYQQALYFEQIATAPHKFMNYSG*

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