Basic Information | |
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IMG/M Taxon OID | 3300004628 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046201 | Gp0055637 | Ga0070399 |
Sample Name | Microbial communities from bioreactor (seeded with sewage sludge) at LBNL, California, USA - Biofuel metagenome 4 (version 1) |
Sequencing Status | Permanent Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | Y |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 550558223 |
Sequencing Scaffolds | 23 |
Novel Protein Genes | 25 |
Associated Families | 22 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 3 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | 7 |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 2 |
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → PVC group | 1 |
Not Available | 3 |
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
Type | Engineered |
Taxonomy | Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Bioreactor → Microbial Communities From Bioreactor (Seeded With Sewage Sludge) At Lbnl, California, Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | Unclassified |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | Lawrence Berkeley National Laboratory, California, USA | |||||||
Coordinates | Lat. (o) | 37.8754404 | Long. (o) | -122.2477251 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007590 | Metagenome / Metatranscriptome | 348 | Y |
F010231 | Metagenome | 306 | Y |
F011839 | Metagenome / Metatranscriptome | 286 | Y |
F014318 | Metagenome / Metatranscriptome | 264 | Y |
F017253 | Metagenome | 242 | Y |
F033667 | Metagenome / Metatranscriptome | 176 | Y |
F042777 | Metagenome / Metatranscriptome | 157 | Y |
F046771 | Metagenome / Metatranscriptome | 150 | Y |
F051629 | Metagenome / Metatranscriptome | 143 | Y |
F063257 | Metagenome / Metatranscriptome | 129 | Y |
F063258 | Metagenome / Metatranscriptome | 129 | Y |
F063339 | Metagenome | 129 | Y |
F067328 | Metagenome / Metatranscriptome | 125 | Y |
F067350 | Metagenome / Metatranscriptome | 125 | Y |
F078103 | Metagenome / Metatranscriptome | 116 | Y |
F080760 | Metagenome / Metatranscriptome | 114 | Y |
F083634 | Metagenome | 112 | Y |
F084257 | Metagenome / Metatranscriptome | 112 | Y |
F084897 | Metagenome / Metatranscriptome | 112 | Y |
F086460 | Metagenome / Metatranscriptome | 110 | Y |
F091596 | Metagenome / Metatranscriptome | 107 | Y |
F106182 | Metagenome / Metatranscriptome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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Ga0070399_1000062 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 101260 | Open in IMG/M |
Ga0070399_1000097 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | 85515 | Open in IMG/M |
Ga0070399_1000270 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | 58309 | Open in IMG/M |
Ga0070399_1000428 | All Organisms → cellular organisms → Bacteria | 47929 | Open in IMG/M |
Ga0070399_1000470 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 45454 | Open in IMG/M |
Ga0070399_1000548 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | 41952 | Open in IMG/M |
Ga0070399_1000582 | All Organisms → cellular organisms → Bacteria | 40775 | Open in IMG/M |
Ga0070399_1001542 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | 23793 | Open in IMG/M |
Ga0070399_1002641 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | 16905 | Open in IMG/M |
Ga0070399_1003660 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 13387 | Open in IMG/M |
Ga0070399_1003933 | All Organisms → cellular organisms → Bacteria | 12694 | Open in IMG/M |
Ga0070399_1004952 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | 10659 | Open in IMG/M |
Ga0070399_1012305 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter | 5302 | Open in IMG/M |
Ga0070399_1014865 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | 4543 | Open in IMG/M |
Ga0070399_1016893 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales | 4109 | Open in IMG/M |
Ga0070399_1020106 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3557 | Open in IMG/M |
Ga0070399_1024266 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3043 | Open in IMG/M |
Ga0070399_1031899 | All Organisms → cellular organisms → Bacteria → PVC group | 2424 | Open in IMG/M |
Ga0070399_1069312 | Not Available | 1257 | Open in IMG/M |
Ga0070399_1079068 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 1122 | Open in IMG/M |
Ga0070399_1110983 | Not Available | 837 | Open in IMG/M |
Ga0070399_1161585 | All Organisms → cellular organisms → Bacteria → PVC group → Lentisphaerae | 602 | Open in IMG/M |
Ga0070399_1174195 | Not Available | 563 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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Ga0070399_1000062 | Ga0070399_100006267 | F080760 | MTIKTTAAALSAEQALPIVDPQRETCVEFVKFCKEQHLKSRAAHTFLRVFHNKSWNAECEKIRESMRPEVNRIFEPAEKALNEGANCKEVLALLVRSLKEAEDL* |
Ga0070399_1000081 | Ga0070399_100008149 | F033667 | MILLVTSNDRRVECGVVLERAVGESVEVCESVRKAASRLRNNEYSAVIMDDPMVEADGEALESLLNNLGLAIPVYVNLAVSNADRIARELRVAQRRNRESRMIAVRAAESQLRSEIRDAVTGILLSTELAMTTPDMPMDALEKLTSVCQLASNIRSRLEVVN* |
Ga0070399_1000097 | Ga0070399_100009715 | F063257 | MRFPIRSMAIMKPHPGKRPDLIAFLREFYTMMCTKQYSRDLLLQDLKHPDDLVHIRYWLSDEARDAAMNDPDVHHYWKDLGAFGNITTIYEELEPIFSTREGIPGDDIIQAATKSDSA* |
Ga0070399_1000270 | Ga0070399_100027023 | F067328 | MALVWMVECKICAQRFPVLPRKAVKGKSTDSLVPHSGAGRFECPHCHELQDYSTDDFIPGEGHIVPSPKPE* |
Ga0070399_1000428 | Ga0070399_100042839 | F007590 | MEHPESPSGRYQAQIAVAKKVLEQKEDWANRAEWEVVKTRDGWEVYAWRVEHPKAKGAKRYLPWGYSVIELDNGLVPLTYHKKG* |
Ga0070399_1000470 | Ga0070399_100047012 | F046771 | MGERVSQLWFSEFILSGSDMTNDRKLFFFALALVLFLAASCKRGAEKKFKPSKLAGELYSGQSLQKVERTLDIMAGNFDTVEDRKPLPSDTRPPYRLLVISKKNARVEGQTGELMLTFFNDRLMTSQFYPADLATARAAVEAGQSLSLASGESHIEPSTRVWVGKDQNGRTYIGWIDKSLQAEQDAWVKQYGQ* |
Ga0070399_1000548 | Ga0070399_10005487 | F042777 | MSHERRQFVISIQAQPFRKKTRYYWIICRENNPDELVSWGFAPTQELAEIESSNEVRDLISGLTQGGRVDGTRYSAIHRC* |
Ga0070399_1000582 | Ga0070399_10005823 | F063258 | MCAFVVLGVLEWITLSPETVRVINGPNGVPPLEVSLRGVSVAVLVLFAFRSWIHFRREMREERERSGRE* |
Ga0070399_1001542 | Ga0070399_100154226 | F106182 | MKWMDRLFAWMLVALGGAHLLALWIPKLGLLRGPWTGGAAVAIISAGLMNAVRSRRKSDRFLRWCTALATLLTAAMCLITLYRFSGNVLHQPAALAISVLAVVELFFCVAR* |
Ga0070399_1002641 | Ga0070399_10026414 | F086460 | MLRHAPNPSSVKTMRLSAVLLLLATTLFAAPPTWKPASFSGLIIGQGRRQDAVRLLGTPDAFQRTRSGEELTYRARGDHKGDLTVRLDPSGIVVEVQEAFPIAIPRTQIYKEFGKDALTAHFSRAKCASDALYRNPRGVIELTLYPSRGIVLWPDQNGYDFAAILYTAKQPGLSRPPACMATVKH* |
Ga0070399_1003660 | Ga0070399_10036601 | F010231 | RLWALAGDVHSGGFAPAFTLSFHDSECSRKPPNAHSLGR* |
Ga0070399_1003933 | Ga0070399_10039334 | F051629 | MPLSANRIWRQLPNEIRVSASKVFWAETTKEQKQFLFAALAKANNVREISVRRAPIERLVNWTAATLTLPDQIANNLLQDYLLHDHRAMIVSYVESLGIPHSDGIIEEGFDLASLPKERVQDAARTLLASPDRQAAELYLKYLVVQGGPWSVIEEVLPTGDA* |
Ga0070399_1004952 | Ga0070399_100495210 | F084257 | MNARKTMKQFYTETEVAHALCISLEALHELLDKHVFDLDNPRPDVLEFTHAELLLLSVWAEPERACNVITMPGKDQIFI* |
Ga0070399_1008326 | Ga0070399_10083262 | F091596 | MHDPGSEAPQTGIYWCSVCKLPVQFKAGEVLPKCKNLCGRGKWEFIKATAAEK* |
Ga0070399_1012305 | Ga0070399_10123057 | F078103 | MKVEGIKVLSLVMSIAMVAVIVLSLAGGVGLGYAIIFGILNAFDRSRQLIKAAPTQVLTNSASSR* |
Ga0070399_1014865 | Ga0070399_10148658 | F011839 | MKPLPVPHVPGNTDAERFDNAVRKIFTVSKDDILKAEAKWKQSRARKQRAKKTA* |
Ga0070399_1016893 | Ga0070399_10168937 | F083634 | MYIMLKMADQTISLDRIRIGGRVCRLARKLFVTVEHENDRLTLSNEEFGLVVSAETLEEGIAGISEELATLWEVYVDADPANLTADALRLRSNLTSLVPAGVSL* |
Ga0070399_1020106 | Ga0070399_10201063 | F063339 | MNATQNPVGQSAEFHQTWQALMQQLERVLSLAHQRQPNRTETREAVSIAKHLLGKVGDQIDTANPE* |
Ga0070399_1024266 | Ga0070399_10242661 | F010231 | MGHWLAEVQFGGFAPAFTLSFHDSERSRSPPKTHSLGRYGQV* |
Ga0070399_1031899 | Ga0070399_10318992 | F084897 | MAKSDAFAETSKARFEVATAQEVNLGVGGSFKAAEIGVLGTSGGLND* |
Ga0070399_1069312 | Ga0070399_10693123 | F017253 | ALSSANGGSYTQGRIADPESSGSSRNAARAERCTPKTTAAALDG* |
Ga0070399_1079068 | Ga0070399_10790683 | F014318 | MGHTGESMSDLYDKIKEDVAFRKQWAEKCGFGFELPSIVPNVPKTRAKSKSMKAA* |
Ga0070399_1110983 | Ga0070399_11109832 | F067350 | MLKKKVYDETAGVAALRRGYQPTLYFEQIATAPHKFMNYSG* |
Ga0070399_1161585 | Ga0070399_11615851 | F067350 | MLKKKVCDDTAGVAALRRGYQQTLYFEQIATATHKFMNYSG* |
Ga0070399_1174195 | Ga0070399_11741952 | F067350 | MLKKKVFDDTAGVATLR*GYQQALYFEQIATAPHKFMNYSG* |
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