Sample 3300003808

Basic Information
IMG/M Taxon OID	3300003808 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110170 \| Gp0088306 \| Ga0007844
Sample Name	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Aug07
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300003808 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0110170 | Gp0088306 | Ga0007844

Sample Name

Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Aug07

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	30123695
Sequencing Scaffolds	25
Novel Protein Genes	30
Associated Families	25

Dataset Contents

Total Genome Size

30123695

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	1
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2
Not Available	16
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102

All Organisms → Viruses

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

Not Available

All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Ecosystem Assignment (GOLD)

Name

Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Type

Environmental

Taxonomy

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

freshwater lake biome → freshwater lake → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Water (non-saline)

Location Information
Location	Crystal Bog, Wisconsin, USA
Coordinates	Lat. (^o)	46.0072	Long. (^o)	-89.6063	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Crystal Bog, Wisconsin, USA

Coordinates

Lat. (^o)

46.0072

Long. (^o)

-89.6063

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F002618	Metagenome	542	Y
F003221	Metagenome	499	N
F005903	Metagenome / Metatranscriptome	386	Y
F009205	Metagenome / Metatranscriptome	321	N
F010082	Metagenome	308	Y
F010743	Metagenome / Metatranscriptome	299	Y
F016635	Metagenome	245	Y
F026169	Metagenome	199	Y
F026551	Metagenome / Metatranscriptome	197	Y
F028540	Metagenome / Metatranscriptome	191	Y
F028730	Metagenome	190	Y
F033004	Metagenome / Metatranscriptome	178	N
F034973	Metagenome / Metatranscriptome	173	Y
F041089	Metagenome	160	Y
F043698	Metagenome / Metatranscriptome	156	Y
F046152	Metagenome / Metatranscriptome	151	N
F055382	Metagenome	138	N
F060504	Metagenome / Metatranscriptome	132	Y
F069617	Metagenome / Metatranscriptome	123	N
F072994	Metagenome / Metatranscriptome	120	Y
F080806	Metagenome / Metatranscriptome	114	Y
F088231	Metagenome	109	N
F091219	Metagenome / Metatranscriptome	107	N
F104331	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0007844_1000006	All Organisms → cellular organisms → Bacteria	23952	Open in IMG/M
Ga0007844_1000007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102	23006	Open in IMG/M
Ga0007844_1000016	All Organisms → Viruses	16275	Open in IMG/M
Ga0007844_1000171	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5272	Open in IMG/M
Ga0007844_1000759	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2618	Open in IMG/M
Ga0007844_1000760	Not Available	2618	Open in IMG/M
Ga0007844_1001594	Not Available	1826	Open in IMG/M
Ga0007844_1003328	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	1231	Open in IMG/M
Ga0007844_1003945	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	1113	Open in IMG/M
Ga0007844_1005126	Not Available	958	Open in IMG/M
Ga0007844_1005541	Not Available	914	Open in IMG/M
Ga0007844_1006725	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp.	815	Open in IMG/M
Ga0007844_1007498	Not Available	762	Open in IMG/M
Ga0007844_1007509	Not Available	762	Open in IMG/M
Ga0007844_1008540	Not Available	706	Open in IMG/M
Ga0007844_1009652	Not Available	656	Open in IMG/M
Ga0007844_1009685	Not Available	655	Open in IMG/M
Ga0007844_1009850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	648	Open in IMG/M
Ga0007844_1010452	Not Available	624	Open in IMG/M
Ga0007844_1011166	Not Available	599	Open in IMG/M
Ga0007844_1011375	Not Available	592	Open in IMG/M
Ga0007844_1011553	Not Available	586	Open in IMG/M
Ga0007844_1013062	Not Available	545	Open in IMG/M
Ga0007844_1013396	Not Available	537	Open in IMG/M
Ga0007844_1014413	Not Available	513	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007844_1000006	Ga0007844_100000612	F026551	MAKAVGNTRKLTFGKRKGGKAKKSSGPKDKKVSKYRSQGR*
Ga0007844_1000006	Ga0007844_100000625	F026169	MATVKKAGGSLTGLKAPNKRVGPVDPKGAWTKVQNKTLAKAKGSAKLVKNKELGATKMKSK*
Ga0007844_1000006	Ga0007844_100000630	F034973	MKSGKPRPAPKVKPPSKAKPNFMKEADTKERLKSPMWPMKQKRLSK*
Ga0007844_1000007	Ga0007844_100000712	F072994	MIALSSPITISPKPVHGKPIKPTTLTSIDYSVNYDNSQQQATARIKGVNVNLLLWNQHTTPPYSSVGQFSDADTDARVSELLNVKGGNTAIEKAILALFPAQPKSV*
Ga0007844_1000007	Ga0007844_100000713	F080806	MMHHFDTAATGAIGFTAPVAAAAISLDPMLDLELRVASLIIGILVGIASFSKLIYDIWADHKARSKK*
Ga0007844_1000016	Ga0007844_100001617	F010082	MLYTRLTNCIDCTTIESLLKDIDCKLTDLANYQYNNIVFSLNKYISGELVNDLLNYKQILAYKLCNPYYCEHFTVQMIASRVIVLIHK*
Ga0007844_1000016	Ga0007844_10000165	F028540	MNPEAWIVIERLGALCATPGISEDVKKLANDHISKLIKDIITPYLVKLSAAEAGIITG*
Ga0007844_1000171	Ga0007844_10001713	F088231	MMTIEQLINEFSNEQGFQFGIDIVMKSLRPGALYSLSASNGVFEIVSWDKSNEFSAPSSQEIRDEYIRHKTIKEFLWYLQSIE
Ga0007844_1000489	Ga0007844_10004891	F028730	IEKRIVYAGLQTYQGFMGYMSRGRTAEAMTMARGWFPEEGQAMGIITPAMMDNAIGTVRFIGPVVPLAAFDLALEGNDQVMCSYGRFGLCDGWTPQSGQFISFKAPRVVLQLDSQIPFPKKATLEQTQAIINFAKVMKIGANWLCVDRTGNGAGIHDSLCSLFGREVMGVNYSWAASETHILGDDSQRANELYNGVVTELIFGLAKYLEFEYLKISPSFRNEELVRQATARRYKQKGKGMVRVESKGEYCKRTRSKSPDELDSLSMLVYLMRQRGGAIATMNEVKPEPTHNRREIQSLVDKMEFMDFSES*
Ga0007844_1000759	Ga0007844_10007592	F005903	MTWDMYCKLMEELFAPNQLGHLPEEEWRTWVDGVNGIGYFVQSGIPDHRLYSKWNEWAEAMCGIMTLGN*
Ga0007844_1000760	Ga0007844_10007601	F043698	MANLKPLPPRITDTFAPHAPRVADAHDKPRILELDVVNPDNGSLDTVNKDTLQVRRTFKDATQAHAAYRRLKQQNVERNKKNQLIQKKLNNEPPYQNKKLESMGQSWRSNRPTGFISTMISRIQPPFRQVIENSPTLTFAAYPIESLDADNKTKIFREEITKCIRGWKGFDDLVAQVVHENTTFGFCGLTWDDLRDWKPEFLRQDYTFFSIETPQVTDQTPIWARKRRYQIAELLPVLE
Ga0007844_1001594	Ga0007844_10015944	F104331	MRTFTYYFDELSILPRYAVYANGEADISYDIASPEPDVGIFEHYATDISIDAIVIYGHGHNDSKLNIDADHWLYAHIEQALLDDESLAYACMEDAA*
Ga0007844_1003328	Ga0007844_10033283	F041089	AGIHDSLCTLFGNEVMGVNYSWAASDQHILGDDSQKANELYNGVVTELLFGLAKYLEFEYLKISPSFRNEELIRQATARRYKQKGKGLVRVESKGEYCKRTRSKSPDALDSLSLLVYLMRLRGGAVATMNEKKPEPRQRVKSLQSIVDSLDFVDMSD*
Ga0007844_1003945	Ga0007844_10039451	F069617	MADNPHFMTPEEMSKVICPFGRGNGMPGKEIVVEGQILGKPCVGDYCAAWRWASWEXPETSEWEYSEEYGCCGMVGP*
Ga0007844_1005126	Ga0007844_10051263	F002539	MNEHIWTAAGTDITIRWRXXGWVPPSELQEYKDKWKYYQNLPLRSLDDAAKEQYEHVLRKAKVARIR*
Ga0007844_1005541	Ga0007844_10055411	F002618	FALKHKSKKDLLERAELCLHMGYQDRHQVGYRLLALQTNEFIITNNATFVLSSEILVKDLFGTELTEKRQNELYEQLCRTPTSVLVNSGEKSYIKLGVGEGTRNVITRYPMRSLMKPTEKREPTITYSGMIPGEEPPYRPLLTEQIDIEQGLQELGQVSAGLVDVEDALEDWGEYHREPKLKGALSYLDQCIVDWDEEDLKHPFAYSWEGDNYSRGYSPHLIGWSGKTGECVSSASKTPSGGHNVARTHVLHVDGPKGSDYTGGHKISLSKTPSGGHNSAFLRVSCGVQSSGVDKEVYELPAIE
Ga0007844_1006725	Ga0007844_10067251	F069617	MADNPHFMTPEEMSKVICPFGRGNGIPGKEVVIDGQILGKPCVSEYCAAWRWASYYEEDENDMIY
Ga0007844_1007498	Ga0007844_10074981	F003221	MGYQDRHQVGYRLLALQTNEFIITNNATFVLSSEILVKDLFGTELTEKRQNELYEQLCRTPTSVLVNSGEKSYIKLGVGEGTRNVITRYPMRSLMKPTEKREPTITYSGMIPGEEPPYRPLLTEQIDIEQGLQELGQVSAGLVEVEDALEDWGEYHREPKLKGALSYLDQCIVDWDEEDLKYPFAYSWEGDNYSRGYSPHLTGWSGETGECVPLLSKTPSGGHNRKGTQVLHVDGP
Ga0007844_1007509	Ga0007844_10075091	F002618	QVGYRLLALQTNEFIITNNATFVLSSEILVKDLFGTELTDKRQEELYQQLCKSTTSVLVNSGEKSYTMKGTEDRMRKVITRYPMRSLMKPTEKREPTITYSGMIPGEEPPYRPLLTEQIDIEQGLQELGQVSAGLVEVEDALEEWGEYHREPKLKGALSYLDQCIVDWDKEDLKNPCAYSWEGDNYSRGYSPHLVGWSGETGECARSLSKVSSEVPTGYRAHCLRVEGPKGSDYTGGPARSLSKASSELPTGYR
Ga0007844_1008540	Ga0007844_10085401	F046152	MTISRRKFLTGLTALVATPAVIRYSGVMAVNAAQATPFATVTGLDLSGQTVVHKFWEPTNANLFAGTQEFANMVRVTSWDYGVPSRDMLPKSNHWQGTVGLDDRTVDQIIADRILKQEQQRKAWLDDPAWTIYGTVGPDTSCTTQFDSAGPIRNPWEMI*
Ga0007844_1009652	Ga0007844_10096521	F016635	MLYAVFDNSHTLANPIRQDILRGGAENRXFCVFXTLEFKFLTXYEVSRPLHRR
Ga0007844_1009685	Ga0007844_10096851	F033004	GVPIHHAQAVQGADGGINLKVEQTKLPEFWGQREKDSITANAFIQRVDNMMAANNWSDHIAFRNFALVLRGSADVWIKSQXTLEDITGDRRAWTIVRPLFKAEFAIESDDKRILDGLAHLAMKQNENVRDYFGRLNITNTIIMEAYDSYTVLPVEPVLTGNVQNDTAAMRAHVRARDINLAKFFLLNHFRAGLPTELRRVLNLQNEDELRLNAAVKL
Ga0007844_1009850	Ga0007844_10098501	F060504	FYLSYVQGNASIGFTSSNYMIFAEYNKFNLASTTQENGYNYTLNGNTTLLSQSPFVQIFNIPYTVPVGHPGGTDIQFQMKSNTGGPFVGSIFAGGYLIADATNTNF*
Ga0007844_1010452	Ga0007844_10104521	F080806	TGAIGFTAPIAAATISLDPTLDLELRVLSLIIGIFVGVASFAKLIYDIWADHKNRNRK*
Ga0007844_1011166	Ga0007844_10111661	F091219	MLKSRCKFVTLLGKYAQQKQVGWEVIFSELGFAGSGARKPRRELEGSALDFFCSLF*
Ga0007844_1011375	Ga0007844_10113752	F016635	MLYAIFDNFHALLNPIRQDILRGGAENRRFCVFLTLEFEFLTTYEVSR
Ga0007844_1011553	Ga0007844_10115531	F010743	HVNTVLKHLGAGVYAEVADLIQLLHGQAKPQIETAANAAPVAANEDTQAAEPPSAA*
Ga0007844_1013062	Ga0007844_10130621	F055382	EGVVPGRVPFDWDRLKGNMKNILPFVENSRKKLSADQDMIKFLRRERSFYFAQWGLSNLTPCKRARDDATGRFSCGVSMEGAAGTRGLGSMEEVNEADDRE*
Ga0007844_1013396	Ga0007844_10133961	F009205	VMFAGAGTNSIMALKNTVLPAMTSTVIKAKFKGTRDEKATYVANICAPRTPMVSGMPSIVNIDENNICNIIVENCAPYDVTLERDDILGVMETETDELVPLTDDFISSVCQDIHNRFPKVKRKRLSRDEIKRRCHLQVPEEFHERYLDILCKHQDALSIDKYDLGLAKDFKHKIHLKT
Ga0007844_1014413	Ga0007844_10144132	F016635	MLYAVFDTFHALVNPIRQDILGGAENRRFCVFLTLEIEFLTIYGVSRPLRR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003808: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Aug07

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences