3300003721: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_RNA (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300003721
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0088394 | Ga0008275
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_105LU_22_RNA (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 26725207
• Sequencing Scaffolds: 21
• Novel Protein Genes: 23
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
Not Available	8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	3
All Organisms → Viruses → Predicted Viral	4
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000200	Metagenome / Metatranscriptome	1633	Y
F002698	Metagenome / Metatranscriptome	536	Y
F004461	Metagenome / Metatranscriptome	437	Y
F005324	Metagenome / Metatranscriptome	404	Y
F006424	Metagenome / Metatranscriptome	373	Y
F007054	Metagenome / Metatranscriptome	359	Y
F009426	Metagenome / Metatranscriptome	318	Y
F012164	Metagenome / Metatranscriptome	283	Y
F021544	Metagenome / Metatranscriptome	218	Y
F026279	Metagenome / Metatranscriptome	198	Y
F030111	Metagenome / Metatranscriptome	186	Y
F037937	Metagenome / Metatranscriptome	167	N
F043962	Metagenome / Metatranscriptome	155	Y
F059010	Metagenome / Metatranscriptome	134	N
F059656	Metagenome / Metatranscriptome	133	N
F067765	Metagenome / Metatranscriptome	125	N
F070157	Metagenome / Metatranscriptome	123	Y
F074014	Metagenome / Metatranscriptome	120	Y
F077986	Metagenome / Metatranscriptome	117	Y
F078742	Metagenome / Metatranscriptome	116	Y
F095518	Metagenome / Metatranscriptome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0008275_101672	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1383
Ga0008275_105021	Not Available	659
Ga0008275_105169	Not Available	557
Ga0008275_108262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	648
Ga0008275_108693	Not Available	1193
Ga0008275_108981	All Organisms → Viruses → Predicted Viral	3363
Ga0008275_109013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	684
Ga0008275_109810	All Organisms → Viruses → Predicted Viral	1437
Ga0008275_110136	Not Available	688
Ga0008275_111588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	947
Ga0008275_112181	All Organisms → Viruses → Predicted Viral	1000
Ga0008275_114898	All Organisms → cellular organisms → Bacteria	846
Ga0008275_117637	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	506
Ga0008275_118616	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	651
Ga0008275_118932	Not Available	1057
Ga0008275_119332	Not Available	803
Ga0008275_119612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194	630
Ga0008275_121375	All Organisms → Viruses → Predicted Viral	1077
Ga0008275_121376	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	546
Ga0008275_126967	Not Available	728
Ga0008275_129890	Not Available	634

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0008275_101672	Ga0008275_1016721	F006424	VIGSGGVNSVFIRDDFPEFGTDLVTALSSLDVNDFSHYVL
Ga0008275_101836	Ga0008275_1018363	F000200	MKRPYRKMKRMIKVYDFKCTEGHLFEDFVSGGVTTSRCSCGAEATKVVSATKCVLEGASGDFPGRHMKWVREHEMAGRK*
Ga0008275_105021	Ga0008275_1050211	F009426	LEIRLSREIDLIPAEVNKDVKLQSGMVPGETSYSIIIFMTTSPCVISVGAARETLFEGKADYCMIVCE*
Ga0008275_105169	Ga0008275_1051691	F095518	HLFITILLLLSLSGKSQTIQLKTALDAKAKTYLNFATEEFEGRLSAHPDHIDLTLRNTGSEALAYKNGDFLLTSSRGNGDELCADLLLIAPGKKVKVTLTRCKDADRLGLFGLKPAYKSYDSFTSDSTFLIDQEFILTIGTYKVRFYTDL*
Ga0008275_108047	Ga0008275_1080471	F000075	DELLAQLSTTLSSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0008275_108262	Ga0008275_1082621	F030111	QADTIFQVSEWPDTDKEMKIAFFEGNKVIEAIKHFEHDAIKGEFEFIENDEEFVASTLRIFNDELEITLSCSEPSLGFKDLSADQRDAIFARSDSKFDFTLDTHSIGKVKNLFSLDKDETFGINSDVQGINVNGKSFNVVLTPDTSGNGNVTVYKKYLNLLDKEEQTVYVSDSKVVFESNDSHTLLTISTCQTA*
Ga0008275_108693	Ga0008275_1086931	F078742	MEELSVGTSSNLINDGWLKIEHDSSWDVLTGTSLGEEGVEGIVTTTDGFIGWHLTVWLNSVLEAEELPACVTDLDTGLTDVDGNDFSHYEVEE
Ga0008275_108981	Ga0008275_1089811	F043962	LYIQNLSLGIFVYIYKQRKYKIMAVSYSWKITQMTKKTVGDNDNVVLHARWELIGTESSTGTEGRFVGATPLDFDPSSTDEFVQYGDLTQDLVIGWVSSSVTGPRGYWDHIEEQIQKKIDEVDDAVDEVNEDLLPWSTGSVTPTPDTGSAE*
Ga0008275_109013	Ga0008275_1090131	F002698	DRIDAHALTEFINRVKLIDSFIYMKIKEGQIQSTVYLPQRDAVKHHSIQADTIFQVSEWPDTDKEMKIAFFEGNRVIEAIKHFEHDAIKGELEFIENDEEFVASTLRIFNDELEITLSCSEPSLGFKDLSQEQRDAIFARTDSQFDFKLDTHSIGKVKNLFSLDKDETFGIKSDVAGINVNGKSFNVVLTPDTNGNGKVTVYKKYLNLLDKEEQTVYVSDSKVVFESN
Ga0008275_109810	Ga0008275_1098101	F007054	MSDKLKNFESAIEGVKFTKPQQGIVSILLRGWEIRIVNKHHMNGGTMMWKSPHSDYLEHAGKVYKAFFNVFYQIKKQKGIEIPTNLFCK*
Ga0008275_110136	Ga0008275_1101361	F026279	PIEVDVEILRKCEPPYEGDSAEELLEYINENVMNNYDWADTNKEVYGNDAAYDLTFDECYDMEVYSDSREKYAQEWLDVGVPNEEYRKMGGFEVMATNVDDV*
Ga0008275_111588	Ga0008275_1115881	F002698	KMKLKIDRIDQHALTNFINRVKLIDSFIYMKIANGRIESSVYLPQRDAVKSHVVNMDQIFQTNEIVPSDKALKIAFFDGAKVIEAIKHFAHDAIQGEIEFIENDEEYVASTFRIYNDELEVKLSCSEPSLGFKDLTAEQQEAIFSRDNSAFNFEIDTHMINKVKNLFNLDSEETFSIKANGKGVNVDGKSFSVVVNPESKGAGEVTVYKKYLNLLDREEQNVYVSNSKVVFQSNDSETLLTVSTCQTA*
Ga0008275_112181	Ga0008275_1121811	F004461	LPYGDRRPNLFIDSMVKSAAVLNRFRLVDGVKNKVNVPIFDGALQFGNDLCVFDGASTASIAEKEMTVDTYKWSFLNCKNALETSYRGLLLKKGQHNPETMDAEFKDWVFDFFAKKSAEHALRLAATELTLEMGQDAAVIDTLIGGGALTPLNILDEMGAAYAAMSDVMLAAVYGDADRDFKPAFFMGTAAMQHYQVAIAEKYTTTPQGIVEGNIPAYFGMEVVHFPSLGADQFFVSAPQNIVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKIGFSYLKGEEIVYAQA*
Ga0008275_114898	Ga0008275_1148982	F074014	MKYTKTFEKFINKTDAVNDVVNEAVNASAYIKAGKLGYNDQFLGRQSLSKTLSLDLGFDKKNEYGGGDWIGFDHVSMYATGKKGGTIIDDALTGNYTYDELKSAAAKHS
Ga0008275_117637	Ga0008275_1176372	F021544	MANFDLNKLMEAKNPQQVMLNETRQLKGKWERTGLLEGLG
Ga0008275_118616	Ga0008275_1186161	F012164	KTNNMSTELKSLKGQFHSQKTNEMENTEMSLTRFSGGKEGMKVQLTMRSQDDFFTHITLNKKEIKKLIKELQENFEL*
Ga0008275_118932	Ga0008275_1189322	F067765	MSTNSKGKLIPFPKIHSNPPIDEVSVGERIREYKESYSSELAEIIWENVLGEMARAGCDFEDNMELYFPSMILIFESIRSLHLQTMNEEHQLQAYAANNVIVDADENAISGGLKKNLEE
Ga0008275_119332	Ga0008275_1193322	F059656	MSTKIKVVNFIAAILLTLSCSSNHCKSTVCPENFTCEDGQCVCDEYHTGNNCETEIRETFYGTFTGIMNVYNEDFMLINSFQKSIIVKDSTNHPAIMSVDNIVAYVDSRTISFKFSSLNEDLNTDIQTEIRGYGGLDNDELDFNYTETTQSVGPNLFPVIYKHYHFIGMR*
Ga0008275_119612	Ga0008275_1196121	F070157	QLSNFLRQDVEPPLNPYNSKGTLADLGQTFVLSGVTGNTSNPITSLWKIDDEVVFSSGAIGYLSWDDSLDALKGVVPGDVNALNTIRVRNLKNGQGFKVGDTITSESGGTATIASIGIDDFPNRAVGRGGGCVLADRRVLDTDSLYTYVLCFGFTPRTQNGLGYVARDGAGVNGIGSLSIFVRCAFYALNGGQMTLNNSGTQFGDISMR
Ga0008275_121375	Ga0008275_1213753	F077986	MKEGTLVWIVASVEDDALQVNCDNDEIVVEPHGFRAMPLYADKQWVKPLTEEADFAQNIIETFNNKEK*
Ga0008275_121376	Ga0008275_1213761	F059010	KREELLNQVAEKLERCEYTPIVTTKEELPIWTMLLNKVYEETFKTK*
Ga0008275_126967	Ga0008275_1269671	F005324	FTVLTSKAQQAFEGVWVMEGSSYKTVMLVSDYAVVKIINYSFKEDATLNEVILNQTNTTMTTSIHNPRNGYTIGMYYTVIDEDTLQCVFTGDENSTVIMKKE*
Ga0008275_129890	Ga0008275_1298901	F037937	ADQFFVSAPQNIVMLTDDYNDVKAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAQA*