3300003585: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA

Overview

Basic Information

• IMG/M Taxon OID: 3300003585
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0046785 | Gp0091322 | Ga0008663
• Sample Name: Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_135m_DNA
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 175667182
• Sequencing Scaffolds: 31
• Novel Protein Genes: 34
• Associated Families: 30

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	1
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina → Nitrospina gracilis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Archaea	1
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal inlet → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Saanich Inlet, British Columbia, Canada
• Coordinates
  • Lat. (^o): 48.6
  • Long. (^o): -123.5
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F005337	Metagenome / Metatranscriptome	404	Y
F011736	Metagenome / Metatranscriptome	287	N
F013764	Metagenome	268	Y
F014191	Metagenome / Metatranscriptome	265	Y
F015265	Metagenome / Metatranscriptome	256	Y
F015441	Metagenome / Metatranscriptome	254	Y
F016995	Metagenome	243	Y
F023956	Metagenome	208	Y
F027018	Metagenome	196	N
F031925	Metagenome	181	N
F033071	Metagenome	178	Y
F035724	Metagenome	171	Y
F041622	Metagenome / Metatranscriptome	159	Y
F042010	Metagenome / Metatranscriptome	159	N
F043633	Metagenome / Metatranscriptome	156	N
F043676	Metagenome / Metatranscriptome	156	Y
F044735	Metagenome / Metatranscriptome	154	N
F046847	Metagenome / Metatranscriptome	150	N
F052383	Metagenome / Metatranscriptome	142	Y
F062248	Metagenome	131	Y
F065134	Metagenome	128	N
F066454	Metagenome / Metatranscriptome	126	N
F068917	Metagenome	124	N
F077377	Metagenome / Metatranscriptome	117	N
F086145	Metagenome / Metatranscriptome	111	N
F094386	Metagenome / Metatranscriptome	106	N
F096496	Metagenome	104	N
F097485	Metagenome / Metatranscriptome	104	N
F100949	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26249J51723_1000485	Not Available	13910
JGI26249J51723_1001142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → unclassified Nitrosomonadales → OM43 clade → Methylophilales bacterium HTCC2181	8491
JGI26249J51723_1001181	All Organisms → cellular organisms → Eukaryota	8348
JGI26249J51723_1001246	Not Available	8119
JGI26249J51723_1001343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique	7832
JGI26249J51723_1002196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	5856
JGI26249J51723_1002342	Not Available	5613
JGI26249J51723_1003727	All Organisms → Viruses → Predicted Viral	4220
JGI26249J51723_1004105	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	3962
JGI26249J51723_1004762	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → Nitrospinia → Nitrospinales → Nitrospinaceae → Nitrospina → Nitrospina gracilis	3612
JGI26249J51723_1006688	All Organisms → Viruses → Predicted Viral	2879
JGI26249J51723_1010796	Not Available	2040
JGI26249J51723_1015877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1535
JGI26249J51723_1016405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1499
JGI26249J51723_1022823	Not Available	1168
JGI26249J51723_1022885	Not Available	1167
JGI26249J51723_1030675	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae	935
JGI26249J51723_1035118	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	847
JGI26249J51723_1036302	All Organisms → cellular organisms → Archaea	827
JGI26249J51723_1040915	Not Available	759
JGI26249J51723_1042219	Not Available	741
JGI26249J51723_1043039	All Organisms → Viruses → environmental samples → uncultured Mediterranean phage	730
JGI26249J51723_1045749	Not Available	700
JGI26249J51723_1052608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	634
JGI26249J51723_1056329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	605
JGI26249J51723_1057890	Not Available	594
JGI26249J51723_1062229	Not Available	566
JGI26249J51723_1066750	Not Available	541
JGI26249J51723_1070917	Not Available	520
JGI26249J51723_1071122	Not Available	519
JGI26249J51723_1072255	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26249J51723_1000485	JGI26249J51723_100048512	F005337	MIPISPYDLETGHTYYIESYTKGSYNYNKGCYDKGVRTNKYRGVINNLNAGICYGHNVIETGNTIEYVNGQETTSTDRLSPTFPGNVFYIYATTNTIDGPYWLFYKPVADYLMTTQVLRQCTRLDKVSIWGLYKQHLGKARGEGATHGGIPPMRRRMKIMNFKGWIQLTSVYLTPEEKKLESAQWRIRCANV*
JGI26249J51723_1001142	JGI26249J51723_10011421	F043633	MDFRKIVLNFFSVLNSIYLGLVIYIEFFMENLTKEPYEIYYDLWMYVFVGYCAILIFNYA
JGI26249J51723_1001181	JGI26249J51723_10011813	F041622	MMDIELHYVSNRTLDNGLNKNIININPHILHSYEVIKERNNYWGIFLRDKDTIIGNTMVVYEKEDNIEYLLLVSVYIDDKYRGRKLCKALVEQTIIKNEMRNKTNLIKVVIAGGMPILQCLLSVFKELNYTIKKYKTKVENIQILQNIRPETAIKIEQSNYENDIWQTLFFEKNDYTFSHFKRRL*
JGI26249J51723_1001181	JGI26249J51723_10011817	F005337	MQLISPYELEKDHTYYIERFDEGVRTNKYRGTIKNLNICTWYDHSVISIGNMIEYVNGQETISSDRTSPTFPGNSYYVHVNTNSSEDQYWVFYKPVADYLLTAQLLRQSLHLDKVTIWGLYNQHICPVIQIK*
JGI26249J51723_1001246	JGI26249J51723_10012462	F015441	MNTLQYKLVKLPYELVNIIFDYDGRIKYKYKSKNAIDYHKNVNVIHKHDTRYSIITPIIDKKMKIMKDTNISPVDTSFYFEFAFDNKPNVMLCYDYNYYFTNQFEICYADMGDTDRCFGHVLGCDQIRTVYK*
JGI26249J51723_1001246	JGI26249J51723_10012463	F015441	MIASFLNYIFGYNKTNTNANASNNNIQIDKMYKKLPYELKNIIFEYDGRIKYKYKNKNSIDYHKFVNVIHKHDERYNIITPIIVKKQIIMKDTETRPNDTSFYFEFAFDKQPNLALCYDYNYNFNNQFEICYTDMKGSGHIFGSDQIRTVYS*
JGI26249J51723_1001343	JGI26249J51723_10013437	F042010	GENVVRAHGSIGNNERWKTPLGARLSRDDIVEKLKAILGSSSGLVA*
JGI26249J51723_1002196	JGI26249J51723_10021965	F011736	MENKNIFLMIFFYCTINLSYAKDLDTNSKMTQGDNKQFENIYQDWEVDKFENIVRYSTHGRVVHGHRFGWIKKAGNCDFDILATTISTQQENKDRLYDFKGDRIDLRINFPQAKGEDPAIIKTDLITVFDLATLKIAFFGNFIQGQMFDSLMAYFNTIKIEVTNPHKIYFDIPSDEFSLNGYVAAKLKAQELCEGMIKTTSL*
JGI26249J51723_1002196	JGI26249J51723_10021969	F044735	MIKNYLIKSIFIFTALITLFLILDHKVDERIAIMQKINHGKAT
JGI26249J51723_1002342	JGI26249J51723_100234213	F043676	MNNKQFDALEAGTKVLIKAWDHNVSDQVETVATYNGWCDHPDWGTAVNVSYENVDCHQDSLFSNERETETDIPVSQFQKNVLEVMEVA*
JGI26249J51723_1003727	JGI26249J51723_10037275	F046847	MADEQTEQVETPKTENEVVISQSKLDKLIDKGFSKGANRAKTELADILGVDSIEQARELINAKRETDEANKSDLDKAAELIQTLNSTIDGLESNNKMMVADMAVQKVVTENGIKDADYFKHLLAQASATDDFDQSTFIEQ
JGI26249J51723_1004105	JGI26249J51723_10041053	F013764	MXXXTPSFFFFRTNSKXSXSSGXPPYTKRAXIAVTVAIPMAFGLNIPLNTFGTFVPVWGLIMINAIVIPSYMTFIIPRASKVFASWLNSTTVKGVN*
JGI26249J51723_1004762	JGI26249J51723_10047622	F086145	MRRIACKGCAGYLGGIFYTQAASRGYLKLLVFFLIWQKKTTVSLKIPIIVRV*
JGI26249J51723_1006688	JGI26249J51723_10066884	F062248	MFIEVVNFLPEELVDELVEFSQQPDIPWELQEMQENLPRRKISYLLDSPVETVHNHFQSLSMFSHLNFMGVTLWKDEENFWMAQHLDNDRVKVAVQIYLDNRNSPGTQIGDRLVSYGRNRGYIMYNNPDMLHGVPKQIPHEGRLSVYALYE*
JGI26249J51723_1010796	JGI26249J51723_10107962	F035724	MIFKYPTLASPTTTLTFNNNPEXPYEREVIKHNSSVQMEDGSFFVYSRSVTNYRYTISVVLTSETERDALESFYDSTVNGMEKTFSYTDPYSDSYTVRFENELHISEIFKDRMYRATFNLIQTA*
JGI26249J51723_1015877	JGI26249J51723_10158772	F077377	MKTLENFACFDQFKKTIQGMRATRKEFEDGQQXEVLTNQRDGRVYKKLKWTALHTSKCIQEAVFLLKEEEPSLSKEQLKKMLQAESVSIWFPYGVRKVEKALSVNGSAFHQRGWDRLGRGEPRFSGDSSTWPANHMAAVSLNSNCFKKE*
JGI26249J51723_1016405	JGI26249J51723_10164051	F027018	MKKIIIHFLFVASCLSWVLVFILSFIFFSPNQTLQLFNNFLPSSYDLQYSEVMNKGSFLNPILEFSNISIQINDVQVYSANKSHYGFLVSPALIIGKVTMSHIHLEEANILLADYSGQKMPKLKINLDKNISISFHETSLAHLGSEMLINGQLDSLIPGLANGHINISHHGKISNLSIDSDGEDSNFLVNLNTLDWLKFFPNDYL
JGI26249J51723_1022823	JGI26249J51723_10228234	F000615	PPPKRLIMCRLRLFYECSDGEMGFAEMVMSYEDDIASFIKHWKTGGRIVITEHIDLV*
JGI26249J51723_1022885	JGI26249J51723_10228852	F065134	MSSTYDCKYCKRNYKEKFNYDRHLLCCEFLFKSRREQNNEADLLAPIPTQHEMYQLIQHMSIRIDKLEKDNQRLQQVAKRKHNVLEYLNGEENLERMTMTFSEWIKKSILTEVHNSLQSVYDTDLLSGLKHLISNAINKLDTNEVPIRTFDSSNTFYIFNLDENKVKKWMKIQNNDLNKYLRRISNQFLYDFKTYWYDAHSELINKNEKYSEQYLDYHGKVLGGNMSEDTLFQKLRKDIFTQVKHNIKSIVEYV
JGI26249J51723_1030675	JGI26249J51723_10306751	F015265	ILPDFIIKSSTMXPDHMTKNPKLIERNAIVSLNNVGLPVFLNPIYDMTPIASPTKNPTKFSMFSNKNSNGV*
JGI26249J51723_1035118	JGI26249J51723_10351181	F066454	MSIRFDVLILINSGVTDRSEIMERLGINIRSVSNCVRFLIKEGWVEYSREPVSAVGSVGYRITQVGIDKIKASTVDDYRQSPKRKIPDYEVMRSHLGVGDNVSRSELINLWNELTDYYLPYEGDKEFTGRRGLSSL*
JGI26249J51723_1036302	JGI26249J51723_10363021	F096496	VNKKLVPTNIERNAILTKQQKIHLKSEKVDPKILNNIRRTLEKKLDGLTEDLDIIKNSKSLENWRLLQSEKFQELHKVLESTVMNFKPFYPFAVKTFSKKVGTKKFRMFWMDLSEESNFSTERIFEPSFALRKIKHYFNDDSFELLCWAVENNLIPCYKNNAKREEDFELAKNDELYFLKLQNTRTFTNEKKVQLKPEIEKERLENNM
JGI26249J51723_1040915	JGI26249J51723_10409153	F014191	MDLSFITADFLNNISWWDGIIYIIMALVVYALIRWINKKI*
JGI26249J51723_1042219	JGI26249J51723_10422191	F023956	MGRSAVAWRSITAHNLATYSQSELGFASNFNIYPGVQLPPPNGSLGYTRGQMNCAMARWKALINAVMPVYFAWNEKSHIPNGTAKSVESHSLSNSESGGVSVDDCAKTEILVCLFDAVPGPGTVP
JGI26249J51723_1043039	JGI26249J51723_10430391	F068917	NEKISKEEWAQYPAYARKLKPYMQKLLKVPLKVRVIKQANHNPWIEVRVAKFGKDIIPNDFRVKVAKSIGASAVRDWDDVTYGTIRSNSIDLRYEQWVKIIGDLK*
JGI26249J51723_1045749	JGI26249J51723_10457492	F033071	VCDNFFINLAVHTSLLKNLQFKKAKILNFKIYTPLATLKYNFVKVS
JGI26249J51723_1052608	JGI26249J51723_10526081	F094386	MEYTEYYELFKQYPEWEVEHENHKEGFNGKRNFELEKAITKLVAEDETLFLYQERTFNFSMLLLNKQYADLDFWVCTTHALHDISEHKQGLLDDGDYRLYFEGAEGPIEEEEEQ
JGI26249J51723_1056329	JGI26249J51723_10563291	F016995	NLKNLPFETSLEEFCSKYIEMISDLKESFILGSDKPGMQWCLSTIKKFKVFLLIFEANELGIEVYKESISSKLPEYSYKTIAQIIDEGLEKGFFIKMSARIQKKHDLKIRNIRPSEDLTVEFINSNIEIISSLMKFLRKHK*
JGI26249J51723_1057890	JGI26249J51723_10578901	F097485	ANKVHKEYLDKARKADIKWNNTPQNAIGPIESRLNEFGTVIPFVFGYLGEANKAVRTLLKEIATVGARNLWRQMGQTCQVNAYGVLLNSYRRTLGVAAVRANARMKLRVLGTLLGRSNDAQHSSATREEARFRKAEWDNYLRHGPRAQAEYHHGFEHCI*
JGI26249J51723_1062229	JGI26249J51723_10622291	F052383	VDITTPKRSADVTIIKGTDIILIKLTTAVKEMDNATSPLANLVNTFDVTPPGAAAIIIKPTAIGADKFSIKATPKATIGKIINCKKNPTKKLFGYLSTLVKSLTESPRPSPSIISAKQRGAILVTISMIYFYETVKL*
JGI26249J51723_1066750	JGI26249J51723_10667501	F005337	MQRISPYDLKNENMYYIEKFSEGVRTNKYRGTITSLNICTWDSHNVLCIGNMIEYINGQETTSSDCTSPTFPGNEYYVHVNTNATEVQYWLFYMCTGESLMIKQVLRQSLFLDKVTLLGLHKQHINLNANF*
JGI26249J51723_1070917	JGI26249J51723_10709171	F023956	MGRTAIAWGSAAAHNLAAYSQSELGFATHFNMYPEVQLPSPNGSLGHTRGLVNCAVARSKALINAVMPVYFVWNKKSHISNGTAKSVGSHSVSNTRSSVISVEDCDQTEILVXTFESSSGPGRLPR
JGI26249J51723_1071122	JGI26249J51723_10711221	F100949	LNLSEIEGWPRDEDWMNDEPHLNHGKMRRRGTVCPCVYEKYSEVTNRAIVNYISELLESEISIVLSIVDVEGVKSMIDGVHTALAYDKLGITEVPVYINSKSLPFGVCYKDYVIDKNGNKIKINPVSGYYESK*
JGI26249J51723_1072255	JGI26249J51723_10722551	F031925	NFVITDMTDQNTDKTTLQFVTAFLKSQKGKYEDTQKHLDKVLGSPDHQNNELVWFFKACMFQKMGKIEQSHDCLKMALMSFDYPPNITPPTTEFISSNSIQYCAPKLDYIV*