3300003408: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_plan

Overview

Basic Information

• IMG/M Taxon OID: 3300003408
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118793 | Gp0095076 | Ga0041897
• Sample Name: Wastewater bioreactor microbial communities from Cape Town, South Africa - Thiocy_inoc_plan
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 284901232
• Sequencing Scaffolds: 6
• Novel Protein Genes: 6
• Associated Families: 6

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Wastewater Bioreactor Microbial Communities From Cape Town, South Africa
• Type: Engineered
• Taxonomy: Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Wastewater Bioreactor → Wastewater Bioreactor Microbial Communities From Cape Town, South Africa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: South Africa: Cape Town
• Coordinates
  • Lat. (^o): -33.936637
  • Long. (^o): 18.478905
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006009	Metagenome / Metatranscriptome	384	Y
F021521	Metagenome / Metatranscriptome	218	Y
F025775	Metagenome	200	Y
F064866	Metagenome / Metatranscriptome	128	Y
F065495	Metagenome / Metatranscriptome	127	Y
F069722	Metagenome / Metatranscriptome	123	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
JGI26524J50256_1000001	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	652222
JGI26524J50256_1000146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	119024
JGI26524J50256_1002483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	10878
JGI26524J50256_1003382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → Dechloromonas aromatica	7692
JGI26524J50256_1025892	All Organisms → cellular organisms → Bacteria	1446
JGI26524J50256_1059722	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	830

Sequences

Scaffold ID	Protein ID	Family	Sequence
JGI26524J50256_1000001	JGI26524J50256_100000180	F064866	MKAPYLCWLVSISALLYPYISSAQWDENNSLGRYSYPIFAVTGKQQFTGTAFFYRSGDTTFLVSNYHAIKGMSPLKKTITFNSDTLYLKYSVKDSGGSKVLPIDVSDAAIGETEIFSMVDRIDLLKIPMELPGDADIHFINDLVDPAYFNAVPEEVVVFGFPTGPGNIPPFYSQQQILAGQVNQQGFADYDASLKVNFPGSSDSARAILSGTARYYYFIKPYAAQGYSGAPVFGKFRTAEGQVIYRFSGVIFAGQPMTRQTWAIKGSVALQYLKGEL*
JGI26524J50256_1000146	JGI26524J50256_100014647	F021521	MAGYSHRTATTIYLAAFRPWGGSTGAGRVRPAGAKIQAQGIFPQKKAL*
JGI26524J50256_1002483	JGI26524J50256_100248314	F069722	MRVRLSAELDPKAKRERPALKKGAAHEKALGHGSGAALQE*
JGI26524J50256_1003382	JGI26524J50256_10033821	F025775	NFNGARTMKQLLTFQGFPMVVVTGLIVWAWISIFSVLIGSFF*
JGI26524J50256_1025892	JGI26524J50256_10258922	F006009	MDTEPKMIWRGVAAGTVMGLGLGGILALFIALRPEMFAGLAG*
JGI26524J50256_1059722	JGI26524J50256_10597222	F065495	MLHRLTVGHLDVAAVERRQTVPVKALEMDVVHRLLGELGEKDDDGDVTLGGCKVKFENGAVSCLWMGGRANRVAEEFALRMHRETGCVIADVGGYRVIEPDELTGLTGQASGSKPGAVRTR*